2026-04-20

RESTORATION THEME OVERVIEW

Week
no.
Date Hour Section in charge Sub-themes under Restoration Teachers
17 Apr-20 13-16 Ecoinf & Biodiv Restoration #1: Conservation and restoration planning Derek Corcoran
& Pil Pedersen
Apr-22 9-12 Ecoinf & Biodiv Restoration #2: Climate adaptation, local NbS and restoration examples from Aarhus Municipality and intro to excursion Pil Pedersen & AAK guest
Lars Hoppe
18 Apr-27 13-16 Ecoinf & Biodiv Restoration #3: Rewilding & NbS, climate change mitigation and adaptation Jens-Christian Svenning,
Jeppe Kristensen & Pil Pedersen
Apr-29 9-12 Ecoinf & Biodiv Restoration #4: Excursion to Vilhelmsborg – farmland conversion to nature + assignment Pil Pedersen & AAK hosts:
Peter Søgaard & Frederik Stoklund
19 May-04 13-16 Ecoinf & Biodiv Restoration #5: Protected areas and wrap-up of restoration theme and integration of tools Pil Pedersen & Calum

Class

A landmark conservation study

Myers et al. (2000, Nature)
Biodiversity hotspots for conservation priorities

What they did:

  • Identified regions with:
    • 🌿 High biodiversity (endemism)
    • ⚠️ High threat (habitat loss)
  • Found:
    • 44% of plant species
    • in just 1.4% of Earth’s land

Proposed idea:

👉 Focus conservation on these hotspots

  • What do we conserve?

What is missing?

  • ❌ No constraints (area, cost)
  • ❌ No decision rule
  • ❌ No complementarity
  • ❌ No selection of specific areas

👉 It identifies important places
👉 But does not make a decision

Systematic conservation planning

What IS SCP?

  • Define an objective
  • Define decision variables
  • Define constraints
  • Use spatial data
  • Compare efficient alternatives
  • Evaluate and interpret solutions

👉 SCP is about choosing where to act

Example 1

Let’s actually try to make a decision

Now you are the planner.

You must: - choose areas - justify your choice - revise it as new information arrives

Chilean patagonia

  • 52.44% of area protected (Half earth)
  • 71,461.48 square kilometers

Landscapes of the Chilean Patagonia

  • Grasslands

Forests

We’ll use Menti to explore your decisions

Stage 1: Biodiversity only

Choose 2 areas using only:

  • richness, the map

Which areas would you protect?

🧭 Based only on biodiversity information:

  • Choose 2 areas to protect
  • Use the Menti code 8306 9647 to vote
Area ID Richness nature_typ
78.22 5 3 Deciduous forest
78.22 12 3 Deciduous forest
77.67 25 10 Evergreen forest
78.22 26 10 Evergreen forest
78.22 36 9 Steppes and grasslands
78.22 62 8 Steppes and grasslands
74.75 101 2 Deciduous shrubland
78.03 105 5 Deciduous shrubland
70.24 113 2 No vegetation

Stage 2: Representation

Nature

Representativity 1

nature_type area_protected Percentage_protected
Evergreen forest 29487.7559 39.84
Peatland 22948.0666 31.00
No vegetation 15137.7522 20.45
High-altitude grassland 4394.5407 5.94
Deciduous shrubland 1039.1316 1.40
Deciduous forest 737.5141 1.00
Low highland shrubland 218.9199 0.30
Steppes and grasslands 53.8861 0.07

New info

  • with this new information select 2 areas

Select 2 areas

Area ID Richness nature_typ
78.22 5 3 Deciduous forest
78.22 12 3 Deciduous forest
77.67 25 10 Evergreen forest
78.22 26 10 Evergreen forest
78.22 36 9 Steppes and grasslands
78.22 62 8 Steppes and grasslands
74.75 101 2 Deciduous shrubland
78.03 105 5 Deciduous shrubland
70.24 113 2 No vegetation

“Now that you know that some habitats are already protected, would you change your decision?”

More representativity information

Nature

Representativity 2

nature_type area_protected Percentage_protected Percentage difference
Evergreen forest 29487.76 39.84 31.23 8.61
Peatland 22948.07 31.00 20.88 10.12
No vegetation 15137.75 20.45 13.49 6.96
High-altitude grassland 4394.54 5.94 5.45 0.49
Deciduous shrubland 1039.13 1.40 5.22 -3.82
Deciduous forest 737.51 1.00 7.09 -6.09
Low highland shrubland 218.92 0.30 1.41 -1.11
Steppes and grasslands 53.89 0.07 15.22 -15.15

With this new information select 2 sites

Select 2 areas

Area ID Richness nature_typ
78.22 5 3 Deciduous forest
78.22 12 3 Deciduous forest
77.67 25 10 Evergreen forest
78.22 26 10 Evergreen forest
78.22 36 9 Steppes and grasslands
78.22 62 8 Steppes and grasslands
74.75 101 2 Deciduous shrubland
78.03 105 5 Deciduous shrubland
70.24 113 2 No vegetation

“Now that you have seen the percentages, would you change your decision?”

Now let’s add carbon storage

strata Area ID Richness nature_typ Carbon
Bosque caducifolio 78.22 5 3 Deciduous forest 230.42
Bosque caducifolio 78.22 12 3 Deciduous forest 138.20
Bosque siempreverde 77.67 25 10 Evergreen forest 276.21
Bosque siempreverde 78.22 26 10 Evergreen forest 248.81
Estepas y Pastizales 78.22 36 9 Steppes and grasslands 74.01
Estepas y Pastizales 78.22 62 8 Steppes and grasslands 103.93
Matorral caducifolio 78.03 105 5 Deciduous shrubland 166.50
Matorral caducifolio 74.75 101 2 Deciduous shrubland 103.54
Sin vegetacion 70.24 113 2 No vegetation 147.96

🌍 Considering carbon stocks, would you change your decision?

🧭 What did we learn?

  • Conservation priorities change as we add new layers of information
  • We may have biases (e.g., forests vs. grasslands, charismatic species)
  • Decisions involve trade-offs between:
    • Biodiversity
    • Ecosystem representation
    • Feasibility and constraints

🤔 Would your original choices still be your final ones? Why or why not?

Break

Example 2

A real SCP problem in Denmark

How do we convert agricultural land into new nature so that we jointly improve:

  • biodiversity, carbon, spatial cohesion while still meeting real planning constraints?`

Step 1: Define the objective (Function)

We want to maximize:

  • biodiversity
  • carbon benefits
  • contiguity

👉 In SCP, the first question is: What are we trying to optimize?

How to plan future landscapes

\[ \text{maximize CI} = \color{#d7191c}{W_B \times \text{Biodiversity}} + \color{#7b3294}{W_C \times \text{Carbon}} + \color{#2c7bb6}{W_Q \times \text{Contiguity}} \]

  • Biodiversity
    • Species richness
    • Phylogenetic diversity
    • Rarity
  • Carbon
    • Aboveground carbon sequestration
    • Belowground carbon sequestration
    • Avoided emissions through rewetting of carbon-rich soils
  • Contiguity
    • Rewards adjacent restored cells of the same nature type
    • Promotes larger and more cohesive habitat patches
  • pareto edge design
    • Biodiversity weight fixed at 1
    • Carbon weight varies from 0 to 1.4

Objective function

\[ CI = \sum_{l}^{L} \sum_{c}^{C} \left( X_{l,c} \cdot \left( \frac{Richness_{l,c} + PD_{l,c} + Rarity_{l,c}}{3} \right) \cdot CanChange_{c} \right) \]

+

\[ \sum_{l}^{L} \sum_{c}^{C} \left( X_{l,c} \cdot PC_{l,c} \cdot CanChange_{c} \right) \]

+

\[ CB \cdot \sum_{i,j}^{E} \sum_{l}^{L} \left( C_{l,i,j} \cdot CanChange_{i} \cdot CanChange_{j} + EN_{l,i} \cdot X_{l,i} \cdot CanChange_{j} \right) \]

CI is the Conservation Index, which is being optimized in this case.

L and l represents different land uses (in this case nature types).

C and c represents the cells of the study area.

Xl,c is the decision variable, which the model can vary to get the optimal solution. There is a decision variable for each nature type in each cell, and it is either 0 (choosing to not restore to this nature type) or 1 (choosing to restore to this nature type).

Richnessl,c, PDl,c and Rarityl,c represent the three biodiversity metrics used here.

CanChange represents whether a cell is available for agriculture-to-nature conversion.

PCl,c is the potential carbon (made up of both aboveground and belowground carbon).

CB is the contiguity bonus.

Cl,i,j represents contiguity. If two cells (i and j) have the same nature type l, there is contiguity between these two cells.

ENl,i represents whether nature type l already exists in cell i.

Step 2: Define the decision variable (Where)

Step 2: Define the decision variable (what into)

Step 2: Define the decision

For each agricultural cell:

  • change or not?
  • if it changes, into what?

Options: - wet / dry - open / forest - poor / rich

👉 SCP needs explicit decisions, not just priority maps

Step 3: Assemble the data

Biodiversity

  • species richness
  • phylogenetic diversity
  • rarity

Carbon

  • future sequestration
  • avoided emissions

👉 Good SCP depends on how objectives are measured

Step 3: Assemble the data

Biodiversity

Step 3: Assemble the data

Carbon

Step 4: Add constraints

Optimization constraints
The same national targets are imposed across all weights and planning contexts
Component Requirement
Eligible land Only agricultural cells can be converted
Decision rule Each selected cell can be assigned at most one of 8 nature types
Area target Total converted area constrained to meet the national 30% protected area target
Representation At least 5% of selected area in each of the 8 nature types
Rewetting At least 70,000 ha rewetted
High-carbon soils At least 80% of rewetted area must occur on soils with >6% carbon
Forest expansion At least 100,000 ha of new forest
Locked land Cultivated protected land must be converted; permanent grasslands may only become open nature

Step 5: Solve the problem repeatedly

We do not ask for one answer.

We vary the carbon weight and generate:

👉 a Pareto frontier of optimal trade-offs

Step 6: Find compromise solutions

The Pareto frontier gives many optimal solutions.

We then identify elbows:

  • strong biodiversity retained
  • carbon improves
  • diminishing returns after that

👉 SCP does not always produce one “best” answer 👉 It can define the best possible choices

Step 7: Evaluate independently

Optimization used a scalable biodiversity proxy.

Afterward we evaluated solutions with:

  • species persistence
  • β-diversity
  • alternative biodiversity dimensions

👉 Optimization and evaluation are not always the same thing

Step 7: Evaluate independently

Step 7: Evaluate independently

Step 7: Evaluate independently

Step 7: Evaluate independently

What did the SCP framework reveal?

  • Most biodiversity gains occur near biodiversity-focused solutions
  • Constraints compress the solution space
  • Hydrology matters more than forest/open shifts
  • Some areas are stable across solutions, others are flexible

👉 The result is not just a map 👉 It is an interpretable decision space

Finally a map

Finally a map

Break

Exercise 3: Write the planning problem

Using the Patagonia example, define an SCP problem.

You have:

  • species richness
  • carbon storage
  • habitat representation
  • existing protected areas

Your task

In small groups, define:

  1. Decision variable
    What are we choosing?

  2. Objective function
    What are we maximizing?

  3. Constraint(s)
    What limits the decision?

  4. Trade-off
    What could conflict with what?

Data

strata Area ID Richness nature_typ Carbon
Bosque caducifolio 78.22 5 3 Deciduous forest 230.42
Bosque caducifolio 78.22 12 3 Deciduous forest 138.20
Bosque siempreverde 77.67 25 10 Evergreen forest 276.21
Bosque siempreverde 78.22 26 10 Evergreen forest 248.81
Estepas y Pastizales 78.22 36 9 Steppes and grasslands 74.01
Estepas y Pastizales 78.22 62 8 Steppes and grasslands 103.93
Matorral caducifolio 78.03 105 5 Deciduous shrubland 166.50
Matorral caducifolio 74.75 101 2 Deciduous shrubland 103.54
Sin vegetacion 70.24 113 2 No vegetation 147.96

Extra

Resilience

Resilience

  • Resilience
    • Contiguity (Area)
    • Stochastic components and Global Change Vulnerability
    • Network stability (Trophic and/or mutualistic)*
    • Ecosystem Functioning*

\[\max_{\text{ObjectiveFunction}} \sum_{i, j} \text{DecisionVariable}_{l, i} \cdot \text{DecisionVariable}_{l, j} \cdot \text{Bonus}\]

Species area relationship

  • More area can keep more species
  • Example for animals in Danish forest

Example Landuse (Global contribution)

\(\begin{align*} \text{Maximize} & = \text{Biodiversity} + \text{Resilience} \cdot \text{bonus}\end{align*}\)

  • Trade-off

Individual cell values (Local contribution)

\(\begin{align*} \text{Maximize} & = \text{Biodiversity}_c + \text{Resilience}_c\cdot \text{bonus}\end{align*}\)

Can we measure culture

Can we measure culture

Can we measure culture

How to deal with expert knowledge

Bossmaps

  • How we deaæ with expert knowledge in sdm?

Expert maps

How do we measure beauty

Intangible services?

Intangible services?

Exercises

Use survey

  • Here is the link for the following exercises

Landuse

  • There are 5 Species

Exercise 1

Which landuse would you pick for each cell

Exercise 2

  • Constraint you can only change 3 landuse cells

Exercise 3

  • Constraint 1: you can only change 3 landuse cells
  • Constraint 2: No species can go extinct

A simple formulation

Let \(x_i = 1\) if we protect area \(i\), otherwise \(0\).

\[ \max \sum_i x_i \left( w_1 \cdot \text{Richness}_i + w_2 \cdot \text{Carbon}_i + w_3 \cdot \text{RepresentationBonus}_i \right) \]

subject to

\[ \sum_i x_i = 2 \]

where:

  • \(\text{Richness}_i\) = biodiversity value
  • \(\text{Carbon}_i\) = carbon storage
  • \(\text{RepresentationBonus}_i\) = bonus for underrepresented habitats