An Introduction to Reproducible Research in R

Biostatistics group Meeting, March 17th

Alessio Crippa
Department of Nutritional Epidemiology and Biostatistics
IMM - Institute of Environmental Medicine
Karolinska Institutet

Reproducible Research

… the ultimate product of academic research is the paper along with the full computational environment used to produce the results in the paper such as the code, data, etc. that can be used to reproduce the results and create new work based on the research.

General Guidelines

Dynamic documents

Tools in R and RStudio

  • Productivity tools for Sweave / Latex

  • knitr

  • R Markdown

  • Presentations

References