Portfolio: Working with VCF files 3: Removing samples with many NAsusing for loops
2022-11-19
Learning objectives
- Review the problem of missing data in SNP datasets
- Introduce the concept of researcher degrees of freedom
- Review how to locate NAs in R using is.na() and which()
- Outline the use of for() loops in R to carry out repetitive tasks.
- Review the use of regular expressions to clean text data.
Introduction
The data we are using to practice working with SNPs in VCF files comes from a paper in Molecular Ecology by Jennifer Walsh called “Subspecies delineation amid phenotypic, geographic and genetic discordance in a songbird.” The goal of the paper is to compare traditional ways of classifying different populations and subspecies of Ammodramus sparrow with morphology and genetic data. In order to do this analysis, though, we need to prepare the data.
Missing data is common in SNP datasets, especially in samples from wild animals where the amount of DNA collected may be small. We can fill in (impute) missing data through methods such as mean imputation. However, if there’s lots of NAs we may want to consider removing samples (in this case birds) for which we’d have to impute many - if not most - of their SNPs. That is to say - if we have to impute a lot of the data for the sample, we’d be better off just removing the sample.
When to remove and when to impute?
There are no strict rules for many of the decisions you have to make when doing data analysis, especially when it comes to preparation and cleaning steps like removing or imputing NAs.
In this study, the authors state:
“we removed any individuals that were missing data at more than 50% of the SNPs.”
This is an arbitrary decision - they could have chosen 60% or 25%. It is therefore called a researcher degree of freedom because they are free to chose what to do, and someone else may have made a different choice.
This type of decision is very common in data analysis, and needs to be documented and justified. Posting the raw data, as the authors have, allows other researchers to explore the consequences of a different choice.
In this exercise we will show how you can remove rows of data if it
is necessary. We’ll use the handy functions which() and
is.na() and a common programming tool called a
for() loop.
Note we are removing individual samples, which are represented by rows in the data. Elsewhere in our protocol we remove columns, for example if all the columns have the same genotype.
Preliminaries
Load the vcfR package with library()`:
library(vcfR) ##
## ***** *** vcfR *** *****
## This is vcfR 1.13.0
## browseVignettes('vcfR') # Documentation
## citation('vcfR') # Citation
## ***** ***** ***** *****Make sure that your working directory is set to the location of the
file all_loci.vcf.
getwd() ## [1] "/Users/ishashah/Downloads"list.files("all_loci.vcf")## character(0)list.files(pattern = "vcf")## [1] "2.26150206-26390206.ALL.chr2_GRCh38.genotypes.20170504.vcf.gz"
## [2] "all_loci.vcf"
## [3] "ALL.chr2_GRCh38.genotypes.20170504.vcf.gz"
## [4] "code_checkpoint_vcfR.html"
## [5] "code_checkpoint_vcfR.Rmd"
## [6] "vcfR_test.vcf"
## [7] "vcfR_test.vcf.gz"Data preparation
Load data
Load the all_loci.vcf file into an R data object with
vcfR::read.vcfR().
bird_snps <- vcfR::read.vcfR("all_loci.vcf") ## Scanning file to determine attributes.
## File attributes:
## meta lines: 8
## header_line: 9
## variant count: 1929
## column count: 81
##
Meta line 8 read in.
## All meta lines processed.
## gt matrix initialized.
## Character matrix gt created.
## Character matrix gt rows: 1929
## Character matrix gt cols: 81
## skip: 0
## nrows: 1929
## row_num: 0
##
Processed variant 1000
Processed variant: 1929
## All variants processedcat("Note - if this didn't work you may not have your working directory set")## Note - if this didn't work you may not have your working directory setGet genotype scores (allele counts)
Use vcfR::extract.gt() to get the genotype scores.
bird_snps_num <- vcfR::extract.gt(bird_snps,
element = "GT",
IDtoRowNames = F,
as.numeric = T,
convertNA = T,
return.alleles = F)Transpose data
Transpose the data with t() so that it has the proper
orientation.
# add t()
bird_snps_num_t <- t(bird_snps_num) # TODOConvert the matrix to a dataframe.
# add data.frame()
bird_snps_num_df <- data.frame(bird_snps_num_t) # TODORemoving NAs
In order to deal with NAs you must first locate them.
Locating NAs in rows
In this paper, the author’s state that they removed from their analysis data an individual (row) that had missing values (NAs) for >50% of the SNPs. First we need to find them.
NAs can be detected in R using is.na().
Let’s take a look at how many NAs are in the first row of the data.
We’ll use bracket notation of [1, ] to
look at the row.
# Add is.na() and select the first row
## using [1, ]
NAs_row_01 <- is.na(bird_snps_num_t)
bird_snps_num_df[1,]## X1 X2 X3 X4 X5 X6 X7 X8 X9 X10 X11 X12 X13 X14 X15 X16 X17
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## X18 X19 X20 X21 X22 X23 X24 X25 X26 X27 X28 X29 X30 X31 X32
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
## X33 X34 X35 X36 X37 X38 X39 X40 X41 X42 X43 X44 X45 X46 X47
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## X48 X49 X50 X51 X52 X53 X54 X55 X56 X57 X58 X59 X60 X61 X62
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## X63 X64 X65 X66 X67 X68 X69 X70 X71 X72 X73 X74 X75 X76 X77
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 1 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0 1 0
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## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0 0 1
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 1 1 1 1 0 0 1 0 0 1
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## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 1 0 0 0 1 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 1
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 1 0 1 0 0 0 0 0 1 0 0 1
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 1 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 1 1 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 1 0
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## sample_ACAAA_Nel3 0 0 0 0 1 0 0 1 1 0 0 0
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## sample_ACAAA_Nel3 1 1 0 0 0 1 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 NA NA NA NA NA NA
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## sample_ACAAA_Nel3 1 0 1 1 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 1 0 NA
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 1 1 0 0 0 0 1 1 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 1 0 NA 0 0 0 1 0 1 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 1
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## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 1 1 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 1 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 1 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 1 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 1 0 1 0 0 1 0 0 0
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## sample_ACAAA_Nel3 1 NA NA NA NA NA NA NA NA 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 NA NA 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 1 1 0 0 0 1 0
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## sample_ACAAA_Nel3 1 1 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 1 0 0 1 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
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## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 1
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## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 1 0 0 0 1 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
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## sample_ACAAA_Nel3 1 0 1 0 0 0 0 1 0 1
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
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## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 1 0
## X1445 X1446 X1447 X1448 X1449 X1450 X1451 X1452 X1453 X1454
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
## X1455 X1456 X1457 X1458 X1459 X1460 X1461 X1462 X1463 X1464
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1465 X1466 X1467 X1468 X1469 X1470 X1471 X1472 X1473 X1474
## sample_ACAAA_Nel3 0 0 0 0 0 NA NA 0 0 0
## X1475 X1476 X1477 X1478 X1479 X1480 X1481 X1482 X1483 X1484
## sample_ACAAA_Nel3 0 0 0 1 1 0 0 0 0 0
## X1485 X1486 X1487 X1488 X1489 X1490 X1491 X1492 X1493 X1494
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1495 X1496 X1497 X1498 X1499 X1500 X1501 X1502 X1503 X1504
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 1 0 0
## X1505 X1506 X1507 X1508 X1509 X1510 X1511 X1512 X1513 X1514
## sample_ACAAA_Nel3 0 0 0 0 0 1 1 1 1 0
## X1515 X1516 X1517 X1518 X1519 X1520 X1521 X1522 X1523 X1524
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1525 X1526 X1527 X1528 X1529 X1530 X1531 X1532 X1533 X1534
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0
## X1535 X1536 X1537 X1538 X1539 X1540 X1541 X1542 X1543 X1544
## sample_ACAAA_Nel3 0 0 NA 0 0 0 0 0 0 0
## X1545 X1546 X1547 X1548 X1549 X1550 X1551 X1552 X1553 X1554
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1555 X1556 X1557 X1558 X1559 X1560 X1561 X1562 X1563 X1564
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1565 X1566 X1567 X1568 X1569 X1570 X1571 X1572 X1573 X1574
## sample_ACAAA_Nel3 0 1 0 0 0 0 1 0 0 0
## X1575 X1576 X1577 X1578 X1579 X1580 X1581 X1582 X1583 X1584
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1585 X1586 X1587 X1588 X1589 X1590 X1591 X1592 X1593 X1594
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
## X1595 X1596 X1597 X1598 X1599 X1600 X1601 X1602 X1603 X1604
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1605 X1606 X1607 X1608 X1609 X1610 X1611 X1612 X1613 X1614
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1615 X1616 X1617 X1618 X1619 X1620 X1621 X1622 X1623 X1624
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0
## X1625 X1626 X1627 X1628 X1629 X1630 X1631 X1632 X1633 X1634
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1635 X1636 X1637 X1638 X1639 X1640 X1641 X1642 X1643 X1644
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1645 X1646 X1647 X1648 X1649 X1650 X1651 X1652 X1653 X1654
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
## X1655 X1656 X1657 X1658 X1659 X1660 X1661 X1662 X1663 X1664
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0
## X1665 X1666 X1667 X1668 X1669 X1670 X1671 X1672 X1673 X1674
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1675 X1676 X1677 X1678 X1679 X1680 X1681 X1682 X1683 X1684
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 0
## X1685 X1686 X1687 X1688 X1689 X1690 X1691 X1692 X1693 X1694
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0
## X1695 X1696 X1697 X1698 X1699 X1700 X1701 X1702 X1703 X1704
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1705 X1706 X1707 X1708 X1709 X1710 X1711 X1712 X1713 X1714
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1715 X1716 X1717 X1718 X1719 X1720 X1721 X1722 X1723 X1724
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1725 X1726 X1727 X1728 X1729 X1730 X1731 X1732 X1733 X1734
## sample_ACAAA_Nel3 0 1 1 0 0 0 0 0 0 0
## X1735 X1736 X1737 X1738 X1739 X1740 X1741 X1742 X1743 X1744
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1745 X1746 X1747 X1748 X1749 X1750 X1751 X1752 X1753 X1754
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1755 X1756 X1757 X1758 X1759 X1760 X1761 X1762 X1763 X1764
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1765 X1766 X1767 X1768 X1769 X1770 X1771 X1772 X1773 X1774
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1775 X1776 X1777 X1778 X1779 X1780 X1781 X1782 X1783 X1784
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0 0 0
## X1785 X1786 X1787 X1788 X1789 X1790 X1791 X1792 X1793 X1794
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1795 X1796 X1797 X1798 X1799 X1800 X1801 X1802 X1803 X1804
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
## X1805 X1806 X1807 X1808 X1809 X1810 X1811 X1812 X1813 X1814
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1815 X1816 X1817 X1818 X1819 X1820 X1821 X1822 X1823 X1824
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0
## X1825 X1826 X1827 X1828 X1829 X1830 X1831 X1832 X1833 X1834
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1835 X1836 X1837 X1838 X1839 X1840 X1841 X1842 X1843 X1844
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1845 X1846 X1847 X1848 X1849 X1850 X1851 X1852 X1853 X1854
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 1
## X1855 X1856 X1857 X1858 X1859 X1860 X1861 X1862 X1863 X1864
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0
## X1865 X1866 X1867 X1868 X1869 X1870 X1871 X1872 X1873 X1874
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1875 X1876 X1877 X1878 X1879 X1880 X1881 X1882 X1883 X1884
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1885 X1886 X1887 X1888 X1889 X1890 X1891 X1892 X1893 X1894
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 1 0
## X1895 X1896 X1897 X1898 X1899 X1900 X1901 X1902 X1903 X1904
## sample_ACAAA_Nel3 0 0 0 0 0 0 NA NA 1 0
## X1905 X1906 X1907 X1908 X1909 X1910 X1911 X1912 X1913 X1914
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 1 1
## X1915 X1916 X1917 X1918 X1919 X1920 X1921 X1922 X1923 X1924
## sample_ACAAA_Nel3 0 0 0 1 1 0 1 0 1 0
## X1925 X1926 X1927 X1928 X1929
## sample_ACAAA_Nel3 NA NA NA NA NA#TODOis.na() returns a logical vector of
TRUE and FALSE values.
Look at the output of is.na() with
head().
# call head() on the vector NAs_row_01
head(NAs_row_01) # TODO## [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,10] [,11] [,12] [,13] [,14] [,15] [,16] [,17] [,18]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE TRUE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,19] [,20] [,21] [,22] [,23] [,24] [,25] [,26] [,27]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,28] [,29] [,30] [,31] [,32] [,33] [,34] [,35] [,36]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,37] [,38] [,39] [,40] [,41] [,42] [,43] [,44] [,45]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,46] [,47] [,48] [,49] [,50] [,51] [,52] [,53] [,54]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE FALSE
## [,55] [,56] [,57] [,58] [,59] [,60] [,61] [,62] [,63]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,64] [,65] [,66] [,67] [,68] [,69] [,70] [,71] [,72]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE TRUE FALSE FALSE
## [,73] [,74] [,75] [,76] [,77] [,78] [,79] [,80] [,81]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,82] [,83] [,84] [,85] [,86] [,87] [,88] [,89] [,90]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,91] [,92] [,93] [,94] [,95] [,96] [,97] [,98] [,99]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,100] [,101] [,102] [,103] [,104] [,105] [,106] [,107]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,108] [,109] [,110] [,111] [,112] [,113] [,114] [,115]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,116] [,117] [,118] [,119] [,120] [,121] [,122] [,123]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,124] [,125] [,126] [,127] [,128] [,129] [,130] [,131]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,132] [,133] [,134] [,135] [,136] [,137] [,138] [,139]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 TRUE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,140] [,141] [,142] [,143] [,144] [,145] [,146] [,147]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,148] [,149] [,150] [,151] [,152] [,153] [,154] [,155]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,156] [,157] [,158] [,159] [,160] [,161] [,162] [,163]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,164] [,165] [,166] [,167] [,168] [,169] [,170] [,171]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,172] [,173] [,174] [,175] [,176] [,177] [,178] [,179]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,180] [,181] [,182] [,183] [,184] [,185] [,186] [,187]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 TRUE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,188] [,189] [,190] [,191] [,192] [,193] [,194] [,195]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,196] [,197] [,198] [,199] [,200] [,201] [,202] [,203]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,204] [,205] [,206] [,207] [,208] [,209] [,210] [,211]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE TRUE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE TRUE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,212] [,213] [,214] [,215] [,216] [,217] [,218] [,219]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,220] [,221] [,222] [,223] [,224] [,225] [,226] [,227]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,228] [,229] [,230] [,231] [,232] [,233] [,234] [,235]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,236] [,237] [,238] [,239] [,240] [,241] [,242] [,243]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,244] [,245] [,246] [,247] [,248] [,249] [,250] [,251]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,252] [,253] [,254] [,255] [,256] [,257] [,258] [,259]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,260] [,261] [,262] [,263] [,264] [,265] [,266] [,267]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE TRUE TRUE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,268] [,269] [,270] [,271] [,272] [,273] [,274] [,275]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,276] [,277] [,278] [,279] [,280] [,281] [,282] [,283]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,284] [,285] [,286] [,287] [,288] [,289] [,290] [,291]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE TRUE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,292] [,293] [,294] [,295] [,296] [,297] [,298] [,299]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,300] [,301] [,302] [,303] [,304] [,305] [,306] [,307]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,308] [,309] [,310] [,311] [,312] [,313] [,314] [,315]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,316] [,317] [,318] [,319] [,320] [,321] [,322] [,323]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,324] [,325] [,326] [,327] [,328] [,329] [,330] [,331]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,332] [,333] [,334] [,335] [,336] [,337] [,338] [,339]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,340] [,341] [,342] [,343] [,344] [,345] [,346] [,347]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,348] [,349] [,350] [,351] [,352] [,353] [,354] [,355]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,356] [,357] [,358] [,359] [,360] [,361] [,362] [,363]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,364] [,365] [,366] [,367] [,368] [,369] [,370] [,371]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE TRUE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE TRUE FALSE FALSE FALSE FALSE FALSE FALSE
## [,372] [,373] [,374] [,375] [,376] [,377] [,378] [,379]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,380] [,381] [,382] [,383] [,384] [,385] [,386] [,387]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,388] [,389] [,390] [,391] [,392] [,393] [,394] [,395]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,396] [,397] [,398] [,399] [,400] [,401] [,402] [,403]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,404] [,405] [,406] [,407] [,408] [,409] [,410] [,411]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,412] [,413] [,414] [,415] [,416] [,417] [,418] [,419]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,420] [,421] [,422] [,423] [,424] [,425] [,426] [,427]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,428] [,429] [,430] [,431] [,432] [,433] [,434] [,435]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,436] [,437] [,438] [,439] [,440] [,441] [,442] [,443]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,444] [,445] [,446] [,447] [,448] [,449] [,450] [,451]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,452] [,453] [,454] [,455] [,456] [,457] [,458] [,459]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,460] [,461] [,462] [,463] [,464] [,465] [,466] [,467]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,468] [,469] [,470] [,471] [,472] [,473] [,474] [,475]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,476] [,477] [,478] [,479] [,480] [,481] [,482] [,483]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,484] [,485] [,486] [,487] [,488] [,489] [,490] [,491]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,492] [,493] [,494] [,495] [,496] [,497] [,498] [,499]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,500] [,501] [,502] [,503] [,504] [,505] [,506] [,507]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,508] [,509] [,510] [,511] [,512] [,513] [,514] [,515]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,516] [,517] [,518] [,519] [,520] [,521] [,522] [,523]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,524] [,525] [,526] [,527] [,528] [,529] [,530] [,531]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,532] [,533] [,534] [,535] [,536] [,537] [,538] [,539]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,540] [,541] [,542] [,543] [,544] [,545] [,546] [,547]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,548] [,549] [,550] [,551] [,552] [,553] [,554] [,555]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,556] [,557] [,558] [,559] [,560] [,561] [,562] [,563]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,564] [,565] [,566] [,567] [,568] [,569] [,570] [,571]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,572] [,573] [,574] [,575] [,576] [,577] [,578] [,579]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,580] [,581] [,582] [,583] [,584] [,585] [,586] [,587]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE TRUE TRUE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,588] [,589] [,590] [,591] [,592] [,593] [,594] [,595]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,596] [,597] [,598] [,599] [,600] [,601] [,602] [,603]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,604] [,605] [,606] [,607] [,608] [,609] [,610] [,611]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,612] [,613] [,614] [,615] [,616] [,617] [,618] [,619]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,620] [,621] [,622] [,623] [,624] [,625] [,626] [,627]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,628] [,629] [,630] [,631] [,632] [,633] [,634] [,635]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,636] [,637] [,638] [,639] [,640] [,641] [,642] [,643]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,644] [,645] [,646] [,647] [,648] [,649] [,650] [,651]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,652] [,653] [,654] [,655] [,656] [,657] [,658] [,659]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,660] [,661] [,662] [,663] [,664] [,665] [,666] [,667]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE TRUE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,668] [,669] [,670] [,671] [,672] [,673] [,674] [,675]
## sample_ACAAA_Nel3 TRUE TRUE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE
## [,676] [,677] [,678] [,679] [,680] [,681] [,682] [,683]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 TRUE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,684] [,685] [,686] [,687] [,688] [,689] [,690] [,691]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,692] [,693] [,694] [,695] [,696] [,697] [,698] [,699]
## sample_ACAAA_Nel3 FALSE TRUE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE TRUE TRUE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,700] [,701] [,702] [,703] [,704] [,705] [,706] [,707]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,708] [,709] [,710] [,711] [,712] [,713] [,714] [,715]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,716] [,717] [,718] [,719] [,720] [,721] [,722] [,723]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,724] [,725] [,726] [,727] [,728] [,729] [,730] [,731]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,732] [,733] [,734] [,735] [,736] [,737] [,738] [,739]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,740] [,741] [,742] [,743] [,744] [,745] [,746] [,747]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE TRUE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE TRUE FALSE FALSE FALSE
## [,748] [,749] [,750] [,751] [,752] [,753] [,754] [,755]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,756] [,757] [,758] [,759] [,760] [,761] [,762] [,763]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,764] [,765] [,766] [,767] [,768] [,769] [,770] [,771]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,772] [,773] [,774] [,775] [,776] [,777] [,778] [,779]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,780] [,781] [,782] [,783] [,784] [,785] [,786] [,787]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,788] [,789] [,790] [,791] [,792] [,793] [,794] [,795]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 TRUE TRUE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,796] [,797] [,798] [,799] [,800] [,801] [,802] [,803]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,804] [,805] [,806] [,807] [,808] [,809] [,810] [,811]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,812] [,813] [,814] [,815] [,816] [,817] [,818] [,819]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE TRUE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE TRUE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,820] [,821] [,822] [,823] [,824] [,825] [,826] [,827]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,828] [,829] [,830] [,831] [,832] [,833] [,834] [,835]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,836] [,837] [,838] [,839] [,840] [,841] [,842] [,843]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,844] [,845] [,846] [,847] [,848] [,849] [,850] [,851]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,852] [,853] [,854] [,855] [,856] [,857] [,858] [,859]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,860] [,861] [,862] [,863] [,864] [,865] [,866] [,867]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,868] [,869] [,870] [,871] [,872] [,873] [,874] [,875]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,876] [,877] [,878] [,879] [,880] [,881] [,882] [,883]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE
## [,884] [,885] [,886] [,887] [,888] [,889] [,890] [,891]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 TRUE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,892] [,893] [,894] [,895] [,896] [,897] [,898] [,899]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,900] [,901] [,902] [,903] [,904] [,905] [,906] [,907]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,908] [,909] [,910] [,911] [,912] [,913] [,914] [,915]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,916] [,917] [,918] [,919] [,920] [,921] [,922] [,923]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,924] [,925] [,926] [,927] [,928] [,929] [,930] [,931]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,932] [,933] [,934] [,935] [,936] [,937] [,938] [,939]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,940] [,941] [,942] [,943] [,944] [,945] [,946] [,947]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,948] [,949] [,950] [,951] [,952] [,953] [,954] [,955]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,956] [,957] [,958] [,959] [,960] [,961] [,962] [,963]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,964] [,965] [,966] [,967] [,968] [,969] [,970] [,971]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,972] [,973] [,974] [,975] [,976] [,977] [,978] [,979]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE TRUE TRUE TRUE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,980] [,981] [,982] [,983] [,984] [,985] [,986] [,987]
## sample_ACAAA_Nel3 FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,988] [,989] [,990] [,991] [,992] [,993] [,994] [,995]
## sample_ACAAA_Nel3 TRUE TRUE TRUE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 TRUE TRUE TRUE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,996] [,997] [,998] [,999] [,1000] [,1001] [,1002]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1003] [,1004] [,1005] [,1006] [,1007] [,1008] [,1009]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE TRUE TRUE TRUE
## [,1010] [,1011] [,1012] [,1013] [,1014] [,1015] [,1016]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 TRUE TRUE TRUE TRUE FALSE FALSE FALSE
## [,1017] [,1018] [,1019] [,1020] [,1021] [,1022] [,1023]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1024] [,1025] [,1026] [,1027] [,1028] [,1029] [,1030]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1031] [,1032] [,1033] [,1034] [,1035] [,1036] [,1037]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1038] [,1039] [,1040] [,1041] [,1042] [,1043] [,1044]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1045] [,1046] [,1047] [,1048] [,1049] [,1050] [,1051]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1052] [,1053] [,1054] [,1055] [,1056] [,1057] [,1058]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 TRUE TRUE TRUE TRUE TRUE TRUE TRUE
## [,1059] [,1060] [,1061] [,1062] [,1063] [,1064] [,1065]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 TRUE TRUE TRUE TRUE TRUE TRUE TRUE
## [,1066] [,1067] [,1068] [,1069] [,1070] [,1071] [,1072]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 TRUE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1073] [,1074] [,1075] [,1076] [,1077] [,1078] [,1079]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1080] [,1081] [,1082] [,1083] [,1084] [,1085] [,1086]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1087] [,1088] [,1089] [,1090] [,1091] [,1092] [,1093]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1094] [,1095] [,1096] [,1097] [,1098] [,1099] [,1100]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1101] [,1102] [,1103] [,1104] [,1105] [,1106] [,1107]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1108] [,1109] [,1110] [,1111] [,1112] [,1113] [,1114]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1115] [,1116] [,1117] [,1118] [,1119] [,1120] [,1121]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1122] [,1123] [,1124] [,1125] [,1126] [,1127] [,1128]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1129] [,1130] [,1131] [,1132] [,1133] [,1134] [,1135]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1136] [,1137] [,1138] [,1139] [,1140] [,1141] [,1142]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1143] [,1144] [,1145] [,1146] [,1147] [,1148] [,1149]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1150] [,1151] [,1152] [,1153] [,1154] [,1155] [,1156]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1157] [,1158] [,1159] [,1160] [,1161] [,1162] [,1163]
## sample_ACAAA_Nel3 FALSE TRUE TRUE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE TRUE TRUE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1164] [,1165] [,1166] [,1167] [,1168] [,1169] [,1170]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1171] [,1172] [,1173] [,1174] [,1175] [,1176] [,1177]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE TRUE TRUE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1178] [,1179] [,1180] [,1181] [,1182] [,1183] [,1184]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1185] [,1186] [,1187] [,1188] [,1189] [,1190] [,1191]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1192] [,1193] [,1194] [,1195] [,1196] [,1197] [,1198]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1199] [,1200] [,1201] [,1202] [,1203] [,1204] [,1205]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1206] [,1207] [,1208] [,1209] [,1210] [,1211] [,1212]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1213] [,1214] [,1215] [,1216] [,1217] [,1218] [,1219]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1220] [,1221] [,1222] [,1223] [,1224] [,1225] [,1226]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1227] [,1228] [,1229] [,1230] [,1231] [,1232] [,1233]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1234] [,1235] [,1236] [,1237] [,1238] [,1239] [,1240]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1241] [,1242] [,1243] [,1244] [,1245] [,1246] [,1247]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1248] [,1249] [,1250] [,1251] [,1252] [,1253] [,1254]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1255] [,1256] [,1257] [,1258] [,1259] [,1260] [,1261]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1262] [,1263] [,1264] [,1265] [,1266] [,1267] [,1268]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1269] [,1270] [,1271] [,1272] [,1273] [,1274] [,1275]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1276] [,1277] [,1278] [,1279] [,1280] [,1281] [,1282]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1283] [,1284] [,1285] [,1286] [,1287] [,1288] [,1289]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1290] [,1291] [,1292] [,1293] [,1294] [,1295] [,1296]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1297] [,1298] [,1299] [,1300] [,1301] [,1302] [,1303]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1304] [,1305] [,1306] [,1307] [,1308] [,1309] [,1310]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1311] [,1312] [,1313] [,1314] [,1315] [,1316] [,1317]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1318] [,1319] [,1320] [,1321] [,1322] [,1323] [,1324]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1325] [,1326] [,1327] [,1328] [,1329] [,1330] [,1331]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1332] [,1333] [,1334] [,1335] [,1336] [,1337] [,1338]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE TRUE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE TRUE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1339] [,1340] [,1341] [,1342] [,1343] [,1344] [,1345]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1346] [,1347] [,1348] [,1349] [,1350] [,1351] [,1352]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1353] [,1354] [,1355] [,1356] [,1357] [,1358] [,1359]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1360] [,1361] [,1362] [,1363] [,1364] [,1365] [,1366]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1367] [,1368] [,1369] [,1370] [,1371] [,1372] [,1373]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1374] [,1375] [,1376] [,1377] [,1378] [,1379] [,1380]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1381] [,1382] [,1383] [,1384] [,1385] [,1386] [,1387]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE TRUE
## [,1388] [,1389] [,1390] [,1391] [,1392] [,1393] [,1394]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1395] [,1396] [,1397] [,1398] [,1399] [,1400] [,1401]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1402] [,1403] [,1404] [,1405] [,1406] [,1407] [,1408]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1409] [,1410] [,1411] [,1412] [,1413] [,1414] [,1415]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1416] [,1417] [,1418] [,1419] [,1420] [,1421] [,1422]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1423] [,1424] [,1425] [,1426] [,1427] [,1428] [,1429]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1430] [,1431] [,1432] [,1433] [,1434] [,1435] [,1436]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1437] [,1438] [,1439] [,1440] [,1441] [,1442] [,1443]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1444] [,1445] [,1446] [,1447] [,1448] [,1449] [,1450]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE TRUE TRUE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE TRUE TRUE FALSE FALSE FALSE
## [,1451] [,1452] [,1453] [,1454] [,1455] [,1456] [,1457]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1458] [,1459] [,1460] [,1461] [,1462] [,1463] [,1464]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1465] [,1466] [,1467] [,1468] [,1469] [,1470] [,1471]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE TRUE TRUE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE TRUE TRUE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1472] [,1473] [,1474] [,1475] [,1476] [,1477] [,1478]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1479] [,1480] [,1481] [,1482] [,1483] [,1484] [,1485]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1486] [,1487] [,1488] [,1489] [,1490] [,1491] [,1492]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1493] [,1494] [,1495] [,1496] [,1497] [,1498] [,1499]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1500] [,1501] [,1502] [,1503] [,1504] [,1505] [,1506]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1507] [,1508] [,1509] [,1510] [,1511] [,1512] [,1513]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 TRUE TRUE TRUE TRUE TRUE TRUE TRUE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1514] [,1515] [,1516] [,1517] [,1518] [,1519] [,1520]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 TRUE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1521] [,1522] [,1523] [,1524] [,1525] [,1526] [,1527]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE TRUE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE TRUE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE TRUE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1528] [,1529] [,1530] [,1531] [,1532] [,1533] [,1534]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1535] [,1536] [,1537] [,1538] [,1539] [,1540] [,1541]
## sample_ACAAA_Nel3 FALSE FALSE TRUE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE TRUE TRUE TRUE TRUE TRUE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE TRUE TRUE TRUE TRUE TRUE
## [,1542] [,1543] [,1544] [,1545] [,1546] [,1547] [,1548]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 TRUE TRUE TRUE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 TRUE TRUE TRUE FALSE FALSE FALSE FALSE
## [,1549] [,1550] [,1551] [,1552] [,1553] [,1554] [,1555]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1556] [,1557] [,1558] [,1559] [,1560] [,1561] [,1562]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1563] [,1564] [,1565] [,1566] [,1567] [,1568] [,1569]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1570] [,1571] [,1572] [,1573] [,1574] [,1575] [,1576]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE TRUE
## [,1577] [,1578] [,1579] [,1580] [,1581] [,1582] [,1583]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 TRUE TRUE TRUE TRUE TRUE FALSE FALSE
## [,1584] [,1585] [,1586] [,1587] [,1588] [,1589] [,1590]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 TRUE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1591] [,1592] [,1593] [,1594] [,1595] [,1596] [,1597]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE TRUE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1598] [,1599] [,1600] [,1601] [,1602] [,1603] [,1604]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1605] [,1606] [,1607] [,1608] [,1609] [,1610] [,1611]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1612] [,1613] [,1614] [,1615] [,1616] [,1617] [,1618]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1619] [,1620] [,1621] [,1622] [,1623] [,1624] [,1625]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1626] [,1627] [,1628] [,1629] [,1630] [,1631] [,1632]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1633] [,1634] [,1635] [,1636] [,1637] [,1638] [,1639]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1640] [,1641] [,1642] [,1643] [,1644] [,1645] [,1646]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1647] [,1648] [,1649] [,1650] [,1651] [,1652] [,1653]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1654] [,1655] [,1656] [,1657] [,1658] [,1659] [,1660]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1661] [,1662] [,1663] [,1664] [,1665] [,1666] [,1667]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1668] [,1669] [,1670] [,1671] [,1672] [,1673] [,1674]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1675] [,1676] [,1677] [,1678] [,1679] [,1680] [,1681]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 TRUE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1682] [,1683] [,1684] [,1685] [,1686] [,1687] [,1688]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1689] [,1690] [,1691] [,1692] [,1693] [,1694] [,1695]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1696] [,1697] [,1698] [,1699] [,1700] [,1701] [,1702]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1703] [,1704] [,1705] [,1706] [,1707] [,1708] [,1709]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1710] [,1711] [,1712] [,1713] [,1714] [,1715] [,1716]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1717] [,1718] [,1719] [,1720] [,1721] [,1722] [,1723]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1724] [,1725] [,1726] [,1727] [,1728] [,1729] [,1730]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1731] [,1732] [,1733] [,1734] [,1735] [,1736] [,1737]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1738] [,1739] [,1740] [,1741] [,1742] [,1743] [,1744]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1745] [,1746] [,1747] [,1748] [,1749] [,1750] [,1751]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1752] [,1753] [,1754] [,1755] [,1756] [,1757] [,1758]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE TRUE TRUE TRUE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE TRUE TRUE TRUE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1759] [,1760] [,1761] [,1762] [,1763] [,1764] [,1765]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1766] [,1767] [,1768] [,1769] [,1770] [,1771] [,1772]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE TRUE TRUE FALSE FALSE FALSE FALSE
## [,1773] [,1774] [,1775] [,1776] [,1777] [,1778] [,1779]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 TRUE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 TRUE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1780] [,1781] [,1782] [,1783] [,1784] [,1785] [,1786]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1787] [,1788] [,1789] [,1790] [,1791] [,1792] [,1793]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1794] [,1795] [,1796] [,1797] [,1798] [,1799] [,1800]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1801] [,1802] [,1803] [,1804] [,1805] [,1806] [,1807]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1808] [,1809] [,1810] [,1811] [,1812] [,1813] [,1814]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1815] [,1816] [,1817] [,1818] [,1819] [,1820] [,1821]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1822] [,1823] [,1824] [,1825] [,1826] [,1827] [,1828]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1829] [,1830] [,1831] [,1832] [,1833] [,1834] [,1835]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1836] [,1837] [,1838] [,1839] [,1840] [,1841] [,1842]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1843] [,1844] [,1845] [,1846] [,1847] [,1848] [,1849]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1850] [,1851] [,1852] [,1853] [,1854] [,1855] [,1856]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1857] [,1858] [,1859] [,1860] [,1861] [,1862] [,1863]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1864] [,1865] [,1866] [,1867] [,1868] [,1869] [,1870]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1871] [,1872] [,1873] [,1874] [,1875] [,1876] [,1877]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1878] [,1879] [,1880] [,1881] [,1882] [,1883] [,1884]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1885] [,1886] [,1887] [,1888] [,1889] [,1890] [,1891]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1892] [,1893] [,1894] [,1895] [,1896] [,1897] [,1898]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1899] [,1900] [,1901] [,1902] [,1903] [,1904] [,1905]
## sample_ACAAA_Nel3 FALSE FALSE TRUE TRUE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE TRUE TRUE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1906] [,1907] [,1908] [,1909] [,1910] [,1911] [,1912]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE FALSE TRUE TRUE TRUE TRUE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE FALSE TRUE TRUE TRUE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1913] [,1914] [,1915] [,1916] [,1917] [,1918] [,1919]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE FALSE FALSE FALSE TRUE
## sample_AGCAT_Nel8 TRUE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 TRUE FALSE FALSE FALSE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE
## [,1920] [,1921] [,1922] [,1923] [,1924] [,1925] [,1926]
## sample_ACAAA_Nel3 FALSE FALSE FALSE FALSE FALSE TRUE TRUE
## sample_ACAGTG_Nel5 TRUE TRUE FALSE FALSE TRUE FALSE FALSE
## sample_AGCAT_Nel8 FALSE FALSE TRUE TRUE TRUE TRUE TRUE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE FALSE TRUE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE TRUE TRUE FALSE FALSE FALSE
## sample_CGATGT_Nel4 FALSE FALSE TRUE TRUE FALSE TRUE TRUE
## [,1927] [,1928] [,1929]
## sample_ACAAA_Nel3 TRUE TRUE TRUE
## sample_ACAGTG_Nel5 FALSE FALSE FALSE
## sample_AGCAT_Nel8 TRUE TRUE TRUE
## sample_ATGAAAC_Nel10 FALSE FALSE FALSE
## sample_ATGAAAC_Nel15 FALSE FALSE FALSE
## sample_CGATGT_Nel4 TRUE TRUE TRUEIn this vector, TRUE means “yes, there was an NA in this position”, and FALSE means “No, no NA there.”
The length of the vector is the length of the entire row we put into
is.na(), meaning we have a TRUE or FALSE answer for every
single value in the row.
We can check this with length() and logical
comparisons.
First, the length of our vector of TRUE/FALSE responses.
# Call length() on NAs_row_01
N_NAs <- length(NAs_row_01) # TODO
N_NAs## [1] 138888Now, the length of our original row
# Call length() on the first row of bird_snps_num_t
## use bracket notation of [1, ] to get the
## first row
length_row <- length(bird_snps_num_t) #TODO
bird_snps_num_df[1,]## X1 X2 X3 X4 X5 X6 X7 X8 X9 X10 X11 X12 X13 X14 X15 X16 X17
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## X18 X19 X20 X21 X22 X23 X24 X25 X26 X27 X28 X29 X30 X31 X32
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
## X33 X34 X35 X36 X37 X38 X39 X40 X41 X42 X43 X44 X45 X46 X47
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## X48 X49 X50 X51 X52 X53 X54 X55 X56 X57 X58 X59 X60 X61 X62
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## X63 X64 X65 X66 X67 X68 X69 X70 X71 X72 X73 X74 X75 X76 X77
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0
## X78 X79 X80 X81 X82 X83 X84 X85 X86 X87 X88 X89 X90 X91 X92
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## X93 X94 X95 X96 X97 X98 X99 X100 X101 X102 X103 X104 X105
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0 0
## X106 X107 X108 X109 X110 X111 X112 X113 X114 X115 X116 X117
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X118 X119 X120 X121 X122 X123 X124 X125 X126 X127 X128 X129
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X130 X131 X132 X133 X134 X135 X136 X137 X138 X139 X140 X141
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X142 X143 X144 X145 X146 X147 X148 X149 X150 X151 X152 X153
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X154 X155 X156 X157 X158 X159 X160 X161 X162 X163 X164 X165
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0 0 0
## X166 X167 X168 X169 X170 X171 X172 X173 X174 X175 X176 X177
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0 0 0
## X178 X179 X180 X181 X182 X183 X184 X185 X186 X187 X188 X189
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 1 0
## X190 X191 X192 X193 X194 X195 X196 X197 X198 X199 X200 X201
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X202 X203 X204 X205 X206 X207 X208 X209 X210 X211 X212 X213
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0 1 0
## X214 X215 X216 X217 X218 X219 X220 X221 X222 X223 X224 X225
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0 0 1
## X226 X227 X228 X229 X230 X231 X232 X233 X234 X235 X236 X237
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X238 X239 X240 X241 X242 X243 X244 X245 X246 X247 X248 X249
## sample_ACAAA_Nel3 0 0 1 1 1 1 0 0 1 0 0 1
## X250 X251 X252 X253 X254 X255 X256 X257 X258 X259 X260 X261
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 0 0 0
## X262 X263 X264 X265 X266 X267 X268 X269 X270 X271 X272 X273
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X274 X275 X276 X277 X278 X279 X280 X281 X282 X283 X284 X285
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0 0 0
## X286 X287 X288 X289 X290 X291 X292 X293 X294 X295 X296 X297
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0 0 0 0 0
## X298 X299 X300 X301 X302 X303 X304 X305 X306 X307 X308 X309
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X310 X311 X312 X313 X314 X315 X316 X317 X318 X319 X320 X321
## sample_ACAAA_Nel3 0 0 1 0 0 0 1 0 0 0 0 0
## X322 X323 X324 X325 X326 X327 X328 X329 X330 X331 X332 X333
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X334 X335 X336 X337 X338 X339 X340 X341 X342 X343 X344 X345
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 1
## X346 X347 X348 X349 X350 X351 X352 X353 X354 X355 X356 X357
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X358 X359 X360 X361 X362 X363 X364 X365 X366 X367 X368 X369
## sample_ACAAA_Nel3 1 0 1 0 0 0 0 0 1 0 0 1
## X370 X371 X372 X373 X374 X375 X376 X377 X378 X379 X380 X381
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 1 0 0 0 0
## X382 X383 X384 X385 X386 X387 X388 X389 X390 X391 X392 X393
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 1 1 0
## X394 X395 X396 X397 X398 X399 X400 X401 X402 X403 X404 X405
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X406 X407 X408 X409 X410 X411 X412 X413 X414 X415 X416 X417
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X418 X419 X420 X421 X422 X423 X424 X425 X426 X427 X428 X429
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0 0 0
## X430 X431 X432 X433 X434 X435 X436 X437 X438 X439 X440 X441
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0 0 0
## X442 X443 X444 X445 X446 X447 X448 X449 X450 X451 X452 X453
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0 0 0
## X454 X455 X456 X457 X458 X459 X460 X461 X462 X463 X464 X465
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X466 X467 X468 X469 X470 X471 X472 X473 X474 X475 X476 X477
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0 0 0
## X478 X479 X480 X481 X482 X483 X484 X485 X486 X487 X488 X489
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X490 X491 X492 X493 X494 X495 X496 X497 X498 X499 X500 X501
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X502 X503 X504 X505 X506 X507 X508 X509 X510 X511 X512 X513
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X514 X515 X516 X517 X518 X519 X520 X521 X522 X523 X524 X525
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X526 X527 X528 X529 X530 X531 X532 X533 X534 X535 X536 X537
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0 0 0
## X538 X539 X540 X541 X542 X543 X544 X545 X546 X547 X548 X549
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 1 0 0 0
## X550 X551 X552 X553 X554 X555 X556 X557 X558 X559 X560 X561
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X562 X563 X564 X565 X566 X567 X568 X569 X570 X571 X572 X573
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X574 X575 X576 X577 X578 X579 X580 X581 X582 X583 X584 X585
## sample_ACAAA_Nel3 0 0 1 1 0 0 0 0 0 0 0 0
## X586 X587 X588 X589 X590 X591 X592 X593 X594 X595 X596 X597
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0 1 1 0 0
## X598 X599 X600 X601 X602 X603 X604 X605 X606 X607 X608 X609
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0 0 0
## X610 X611 X612 X613 X614 X615 X616 X617 X618 X619 X620 X621
## sample_ACAAA_Nel3 0 0 0 0 1 0 1 0 0 0 0 0
## X622 X623 X624 X625 X626 X627 X628 X629 X630 X631 X632 X633
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 1 0
## X634 X635 X636 X637 X638 X639 X640 X641 X642 X643 X644 X645
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 1 1 0 0 0
## X646 X647 X648 X649 X650 X651 X652 X653 X654 X655 X656 X657
## sample_ACAAA_Nel3 1 1 0 0 0 1 0 0 0 0 0 0
## X658 X659 X660 X661 X662 X663 X664 X665 X666 X667 X668 X669
## sample_ACAAA_Nel3 0 0 0 0 0 0 NA NA NA NA NA NA
## X670 X671 X672 X673 X674 X675 X676 X677 X678 X679 X680 X681
## sample_ACAAA_Nel3 1 0 1 1 0 0 0 0 0 0 0 0
## X682 X683 X684 X685 X686 X687 X688 X689 X690 X691 X692 X693
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 1 0 NA
## X694 X695 X696 X697 X698 X699 X700 X701 X702 X703 X704 X705
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X706 X707 X708 X709 X710 X711 X712 X713 X714 X715 X716 X717
## sample_ACAAA_Nel3 1 1 0 0 0 0 1 1 0 0 0 0
## X718 X719 X720 X721 X722 X723 X724 X725 X726 X727 X728 X729
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X730 X731 X732 X733 X734 X735 X736 X737 X738 X739 X740 X741
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X742 X743 X744 X745 X746 X747 X748 X749 X750 X751 X752 X753
## sample_ACAAA_Nel3 1 0 NA 0 0 0 1 0 1 0 0 0
## X754 X755 X756 X757 X758 X759 X760 X761 X762 X763 X764 X765
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X766 X767 X768 X769 X770 X771 X772 X773 X774 X775 X776 X777
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 1
## X778 X779 X780 X781 X782 X783 X784 X785 X786 X787 X788 X789
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 0 0 0
## X790 X791 X792 X793 X794 X795 X796 X797 X798 X799 X800 X801
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X802 X803 X804 X805 X806 X807 X808 X809 X810 X811 X812 X813
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X814 X815 X816 X817 X818 X819 X820 X821 X822 X823 X824 X825
## sample_ACAAA_Nel3 0 0 1 1 0 0 0 0 0 0 0 0
## X826 X827 X828 X829 X830 X831 X832 X833 X834 X835 X836 X837
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 1 0 0 0
## X838 X839 X840 X841 X842 X843 X844 X845 X846 X847 X848 X849
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0 0 0
## X850 X851 X852 X853 X854 X855 X856 X857 X858 X859 X860 X861
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X862 X863 X864 X865 X866 X867 X868 X869 X870 X871 X872 X873
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X874 X875 X876 X877 X878 X879 X880 X881 X882 X883 X884 X885
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 1 0 0
## X886 X887 X888 X889 X890 X891 X892 X893 X894 X895 X896 X897
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X898 X899 X900 X901 X902 X903 X904 X905 X906 X907 X908 X909
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0 0 0 0 0
## X910 X911 X912 X913 X914 X915 X916 X917 X918 X919 X920 X921
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 1 0 0 0
## X922 X923 X924 X925 X926 X927 X928 X929 X930 X931 X932 X933
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0 0 0
## X934 X935 X936 X937 X938 X939 X940 X941 X942 X943 X944 X945
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X946 X947 X948 X949 X950 X951 X952 X953 X954 X955 X956 X957
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X958 X959 X960 X961 X962 X963 X964 X965 X966 X967 X968 X969
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X970 X971 X972 X973 X974 X975 X976 X977 X978 X979 X980 X981
## sample_ACAAA_Nel3 0 0 0 1 0 1 0 0 1 0 0 0
## X982 X983 X984 X985 X986 X987 X988 X989 X990 X991 X992 X993
## sample_ACAAA_Nel3 1 NA NA NA NA NA NA NA NA 0 0 0
## X994 X995 X996 X997 X998 X999 X1000 X1001 X1002 X1003 X1004
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0
## X1005 X1006 X1007 X1008 X1009 X1010 X1011 X1012 X1013 X1014
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 0
## X1015 X1016 X1017 X1018 X1019 X1020 X1021 X1022 X1023 X1024
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1025 X1026 X1027 X1028 X1029 X1030 X1031 X1032 X1033 X1034
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1035 X1036 X1037 X1038 X1039 X1040 X1041 X1042 X1043 X1044
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0
## X1045 X1046 X1047 X1048 X1049 X1050 X1051 X1052 X1053 X1054
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 1 0
## X1055 X1056 X1057 X1058 X1059 X1060 X1061 X1062 X1063 X1064
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 1
## X1065 X1066 X1067 X1068 X1069 X1070 X1071 X1072 X1073 X1074
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1075 X1076 X1077 X1078 X1079 X1080 X1081 X1082 X1083 X1084
## sample_ACAAA_Nel3 0 0 0 0 1 1 0 0 0 0
## X1085 X1086 X1087 X1088 X1089 X1090 X1091 X1092 X1093 X1094
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0
## X1095 X1096 X1097 X1098 X1099 X1100 X1101 X1102 X1103 X1104
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0
## X1105 X1106 X1107 X1108 X1109 X1110 X1111 X1112 X1113 X1114
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1115 X1116 X1117 X1118 X1119 X1120 X1121 X1122 X1123 X1124
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1125 X1126 X1127 X1128 X1129 X1130 X1131 X1132 X1133 X1134
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0 1 1
## X1135 X1136 X1137 X1138 X1139 X1140 X1141 X1142 X1143 X1144
## sample_ACAAA_Nel3 1 1 1 0 0 0 0 0 1 0
## X1145 X1146 X1147 X1148 X1149 X1150 X1151 X1152 X1153 X1154
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0
## X1155 X1156 X1157 X1158 X1159 X1160 X1161 X1162 X1163 X1164
## sample_ACAAA_Nel3 0 0 0 NA NA 0 0 0 0 0
## X1165 X1166 X1167 X1168 X1169 X1170 X1171 X1172 X1173 X1174
## sample_ACAAA_Nel3 0 0 0 1 1 0 0 0 1 0
## X1175 X1176 X1177 X1178 X1179 X1180 X1181 X1182 X1183 X1184
## sample_ACAAA_Nel3 1 1 0 0 0 0 0 0 0 0
## X1185 X1186 X1187 X1188 X1189 X1190 X1191 X1192 X1193 X1194
## sample_ACAAA_Nel3 0 0 1 0 0 1 0 0 0 0
## X1195 X1196 X1197 X1198 X1199 X1200 X1201 X1202 X1203 X1204
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1205 X1206 X1207 X1208 X1209 X1210 X1211 X1212 X1213 X1214
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0
## X1215 X1216 X1217 X1218 X1219 X1220 X1221 X1222 X1223 X1224
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1225 X1226 X1227 X1228 X1229 X1230 X1231 X1232 X1233 X1234
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1235 X1236 X1237 X1238 X1239 X1240 X1241 X1242 X1243 X1244
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1245 X1246 X1247 X1248 X1249 X1250 X1251 X1252 X1253 X1254
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1255 X1256 X1257 X1258 X1259 X1260 X1261 X1262 X1263 X1264
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0
## X1265 X1266 X1267 X1268 X1269 X1270 X1271 X1272 X1273 X1274
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0
## X1275 X1276 X1277 X1278 X1279 X1280 X1281 X1282 X1283 X1284
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1285 X1286 X1287 X1288 X1289 X1290 X1291 X1292 X1293 X1294
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1295 X1296 X1297 X1298 X1299 X1300 X1301 X1302 X1303 X1304
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0
## X1305 X1306 X1307 X1308 X1309 X1310 X1311 X1312 X1313 X1314
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1315 X1316 X1317 X1318 X1319 X1320 X1321 X1322 X1323 X1324
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0
## X1325 X1326 X1327 X1328 X1329 X1330 X1331 X1332 X1333 X1334
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 1
## X1335 X1336 X1337 X1338 X1339 X1340 X1341 X1342 X1343 X1344
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0
## X1345 X1346 X1347 X1348 X1349 X1350 X1351 X1352 X1353 X1354
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1355 X1356 X1357 X1358 X1359 X1360 X1361 X1362 X1363 X1364
## sample_ACAAA_Nel3 1 0 0 0 1 0 0 0 0 0
## X1365 X1366 X1367 X1368 X1369 X1370 X1371 X1372 X1373 X1374
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0
## X1375 X1376 X1377 X1378 X1379 X1380 X1381 X1382 X1383 X1384
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1385 X1386 X1387 X1388 X1389 X1390 X1391 X1392 X1393 X1394
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1395 X1396 X1397 X1398 X1399 X1400 X1401 X1402 X1403 X1404
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1405 X1406 X1407 X1408 X1409 X1410 X1411 X1412 X1413 X1414
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
## X1415 X1416 X1417 X1418 X1419 X1420 X1421 X1422 X1423 X1424
## sample_ACAAA_Nel3 1 0 1 0 0 0 0 1 0 1
## X1425 X1426 X1427 X1428 X1429 X1430 X1431 X1432 X1433 X1434
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1435 X1436 X1437 X1438 X1439 X1440 X1441 X1442 X1443 X1444
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 1 0
## X1445 X1446 X1447 X1448 X1449 X1450 X1451 X1452 X1453 X1454
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
## X1455 X1456 X1457 X1458 X1459 X1460 X1461 X1462 X1463 X1464
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1465 X1466 X1467 X1468 X1469 X1470 X1471 X1472 X1473 X1474
## sample_ACAAA_Nel3 0 0 0 0 0 NA NA 0 0 0
## X1475 X1476 X1477 X1478 X1479 X1480 X1481 X1482 X1483 X1484
## sample_ACAAA_Nel3 0 0 0 1 1 0 0 0 0 0
## X1485 X1486 X1487 X1488 X1489 X1490 X1491 X1492 X1493 X1494
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1495 X1496 X1497 X1498 X1499 X1500 X1501 X1502 X1503 X1504
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 1 0 0
## X1505 X1506 X1507 X1508 X1509 X1510 X1511 X1512 X1513 X1514
## sample_ACAAA_Nel3 0 0 0 0 0 1 1 1 1 0
## X1515 X1516 X1517 X1518 X1519 X1520 X1521 X1522 X1523 X1524
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1525 X1526 X1527 X1528 X1529 X1530 X1531 X1532 X1533 X1534
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0
## X1535 X1536 X1537 X1538 X1539 X1540 X1541 X1542 X1543 X1544
## sample_ACAAA_Nel3 0 0 NA 0 0 0 0 0 0 0
## X1545 X1546 X1547 X1548 X1549 X1550 X1551 X1552 X1553 X1554
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1555 X1556 X1557 X1558 X1559 X1560 X1561 X1562 X1563 X1564
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1565 X1566 X1567 X1568 X1569 X1570 X1571 X1572 X1573 X1574
## sample_ACAAA_Nel3 0 1 0 0 0 0 1 0 0 0
## X1575 X1576 X1577 X1578 X1579 X1580 X1581 X1582 X1583 X1584
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1585 X1586 X1587 X1588 X1589 X1590 X1591 X1592 X1593 X1594
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
## X1595 X1596 X1597 X1598 X1599 X1600 X1601 X1602 X1603 X1604
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1605 X1606 X1607 X1608 X1609 X1610 X1611 X1612 X1613 X1614
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1615 X1616 X1617 X1618 X1619 X1620 X1621 X1622 X1623 X1624
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0
## X1625 X1626 X1627 X1628 X1629 X1630 X1631 X1632 X1633 X1634
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1635 X1636 X1637 X1638 X1639 X1640 X1641 X1642 X1643 X1644
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1645 X1646 X1647 X1648 X1649 X1650 X1651 X1652 X1653 X1654
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
## X1655 X1656 X1657 X1658 X1659 X1660 X1661 X1662 X1663 X1664
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0
## X1665 X1666 X1667 X1668 X1669 X1670 X1671 X1672 X1673 X1674
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1675 X1676 X1677 X1678 X1679 X1680 X1681 X1682 X1683 X1684
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 0
## X1685 X1686 X1687 X1688 X1689 X1690 X1691 X1692 X1693 X1694
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0
## X1695 X1696 X1697 X1698 X1699 X1700 X1701 X1702 X1703 X1704
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1705 X1706 X1707 X1708 X1709 X1710 X1711 X1712 X1713 X1714
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1715 X1716 X1717 X1718 X1719 X1720 X1721 X1722 X1723 X1724
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1725 X1726 X1727 X1728 X1729 X1730 X1731 X1732 X1733 X1734
## sample_ACAAA_Nel3 0 1 1 0 0 0 0 0 0 0
## X1735 X1736 X1737 X1738 X1739 X1740 X1741 X1742 X1743 X1744
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1745 X1746 X1747 X1748 X1749 X1750 X1751 X1752 X1753 X1754
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1755 X1756 X1757 X1758 X1759 X1760 X1761 X1762 X1763 X1764
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1765 X1766 X1767 X1768 X1769 X1770 X1771 X1772 X1773 X1774
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1775 X1776 X1777 X1778 X1779 X1780 X1781 X1782 X1783 X1784
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0 0 0
## X1785 X1786 X1787 X1788 X1789 X1790 X1791 X1792 X1793 X1794
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1795 X1796 X1797 X1798 X1799 X1800 X1801 X1802 X1803 X1804
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
## X1805 X1806 X1807 X1808 X1809 X1810 X1811 X1812 X1813 X1814
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1815 X1816 X1817 X1818 X1819 X1820 X1821 X1822 X1823 X1824
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0
## X1825 X1826 X1827 X1828 X1829 X1830 X1831 X1832 X1833 X1834
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1835 X1836 X1837 X1838 X1839 X1840 X1841 X1842 X1843 X1844
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1845 X1846 X1847 X1848 X1849 X1850 X1851 X1852 X1853 X1854
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 1
## X1855 X1856 X1857 X1858 X1859 X1860 X1861 X1862 X1863 X1864
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0
## X1865 X1866 X1867 X1868 X1869 X1870 X1871 X1872 X1873 X1874
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1875 X1876 X1877 X1878 X1879 X1880 X1881 X1882 X1883 X1884
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1885 X1886 X1887 X1888 X1889 X1890 X1891 X1892 X1893 X1894
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 1 0
## X1895 X1896 X1897 X1898 X1899 X1900 X1901 X1902 X1903 X1904
## sample_ACAAA_Nel3 0 0 0 0 0 0 NA NA 1 0
## X1905 X1906 X1907 X1908 X1909 X1910 X1911 X1912 X1913 X1914
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 1 1
## X1915 X1916 X1917 X1918 X1919 X1920 X1921 X1922 X1923 X1924
## sample_ACAAA_Nel3 0 0 0 1 1 0 1 0 1 0
## X1925 X1926 X1927 X1928 X1929
## sample_ACAAA_Nel3 NA NA NA NA NANow check that they are identical using ==
# Use a logical comparison with ==
## to confirm they are the same length
N_NAs == length_row # TODO## [1] TRUEWe can work directly with a vector of TRUE and
FALSE value, but I find its easiest to first convert this
logical vector into a vector of index
values (indices) that tell us exactly where
the NAs are in the dataframe.
We can get these indices this with which(... == TRUE),
because in the vector TRUE is saying “Yes, its TRUE there
was an NA there.”
# Add which()
which(NAs_row_01 == TRUE) # TODO## [1] 31 36 37 39 41 43 45 50 52 53
## [11] 103 108 109 111 113 115 117 122 124 125
## [21] 181 183 185 197 251 253 255 257 269 323
## [31] 325 327 329 341 399 413 471 485 543 557
## [41] 607 614 615 617 629 685 687 689 699 701
## [51] 751 759 761 763 772 773 783 823 831 833
## [61] 835 844 845 855 895 903 905 907 916 917
## [71] 927 972 973 974 975 977 979 989 1011 1036
## [81] 1047 1049 1061 1115 1117 1118 1119 1121 1123 1125
## [91] 1133 1136 1139 1141 1149 1191 1204 1205 1261 1263
## [101] 1265 1267 1269 1277 1327 1328 1331 1333 1334 1335
## [111] 1337 1346 1348 1349 1360 1366 1407 1409 1418 1421
## [121] 1477 1479 1485 1493 1543 1548 1549 1551 1553 1555
## [131] 1558 1561 1562 1564 1565 1566 1594 1615 1616 1621
## [141] 1623 1625 1634 1636 1637 1652 1653 1666 1687 1688
## [151] 1693 1695 1697 1706 1708 1709 1724 1725 1738 1759
## [161] 1760 1765 1767 1769 1778 1780 1781 1796 1797 1810
## [171] 1831 1832 1837 1839 1841 1850 1852 1853 1868 1869
## [181] 1882 1903 1904 1909 1911 1913 1922 1924 1925 1940
## [191] 1941 1981 1983 1985 1989 1997 2055 2069 2119 2124
## [201] 2126 2127 2129 2131 2140 2141 2191 2192 2196 2199
## [211] 2201 2212 2213 2263 2264 2268 2271 2273 2284 2285
## [221] 2335 2336 2340 2343 2345 2356 2357 2407 2408 2413
## [231] 2415 2417 2419 2426 2428 2429 2479 2480 2485 2487
## [241] 2489 2491 2498 2500 2501 2557 2559 2573 2623 2629
## [251] 2631 2633 2645 2703 2705 2717 2775 2781 2785 2786
## [261] 2788 2789 2790 2797 2799 2800 2804 2806 2839 2843
## [271] 2845 2846 2847 2849 2851 2858 2861 2864 2911 2919
## [281] 2921 2933 2989 2990 2991 2993 2995 3005 3055 3063
## [291] 3065 3077 3135 3137 3139 3149 3207 3209 3211 3221
## [301] 3271 3276 3279 3283 3293 3347 3349 3350 3351 3361
## [311] 3365 3419 3421 3422 3423 3433 3437 3495 3499 3500
## [321] 3509 3559 3560 3565 3567 3569 3571 3581 3639 3641
## [331] 3645 3650 3652 3653 3711 3713 3717 3722 3724 3725
## [341] 3750 3754 3771 3775 3776 3781 3782 3783 3785 3788
## [351] 3794 3796 3797 3800 3805 3813 3853 3855 3869 3925
## [361] 3926 3927 3929 3931 3933 3934 3941 3944 3949 3958
## [371] 3997 3998 3999 4001 4003 4005 4012 4013 4021 4026
## [381] 4063 4071 4073 4085 4135 4141 4142 4143 4145 4149
## [391] 4150 4156 4157 4163 4164 4172 4174 4175 4215 4221
## [401] 4229 4279 4285 4287 4289 4291 4301 4359 4373 4429
## [411] 4431 4435 4445 4496 4501 4502 4503 4505 4507 4509
## [421] 4517 4525 4532 4575 4589 4639 4644 4645 4647 4649
## [431] 4651 4652 4660 4661 4711 4716 4717 4719 4721 4723
## [441] 4724 4732 4733 4789 4791 4793 4795 4797 4798 4804
## [451] 4805 4806 4808 4810 4813 4816 4821 4855 4860 4861
## [461] 4862 4863 4865 4867 4869 4877 4885 4893 4894 4927
## [471] 4933 4935 4937 4939 4949 4974 4999 5004 5005 5007
## [481] 5008 5009 5011 5020 5021 5071 5072 5076 5077 5079
## [491] 5081 5093 5143 5144 5148 5149 5151 5153 5165 5215
## [501] 5216 5221 5223 5225 5236 5237 5287 5291 5293 5295
## [511] 5297 5303 5306 5308 5309 5310 5324 5325 5359 5364
## [521] 5365 5367 5369 5371 5372 5373 5378 5380 5381 5382
## [531] 5384 5387 5391 5396 5398 5431 5436 5437 5439 5441
## [541] 5443 5444 5445 5450 5452 5453 5454 5456 5459 5463
## [551] 5468 5470 5503 5504 5509 5510 5511 5513 5515 5517
## [561] 5524 5525 5532 5533 5540 5541 5542 5575 5580 5581
## [571] 5583 5585 5597 5647 5653 5655 5669 5727 5741 5795
## [581] 5797 5798 5799 5801 5803 5804 5805 5810 5813 5816
## [591] 5818 5819 5821 5828 5829 5830 5852 5863 5867 5869
## [601] 5871 5873 5884 5885 5940 5942 5943 5954 5957 6012
## [611] 6014 6015 6026 6029 6087 6089 6101 6151 6157 6159
## [621] 6161 6173 6223 6229 6231 6233 6245 6301 6302 6303
## [631] 6317 6373 6374 6375 6389 6445 6446 6447 6461 6511
## [641] 6512 6517 6518 6519 6521 6523 6525 6530 6533 6539
## [651] 6541 6542 6549 6583 6589 6591 6593 6598 6602 6605
## [661] 6620 6655 6660 6663 6677 6735 6749 6807 6821 6839
## [671] 6877 6879 6893 6949 6951 6965 7021 7023 7025 7037
## [681] 7095 7109 7167 7181 7231 7236 7237 7239 7241 7246
## [691] 7253 7268 7269 7270 7309 7311 7313 7315 7316 7324
## [701] 7325 7342 7383 7385 7397 7447 7448 7455 7457 7459
## [711] 7465 7469 7472 7519 7520 7525 7527 7529 7531 7540
## [721] 7541 7556 7591 7592 7597 7599 7601 7603 7612 7613
## [731] 7628 7663 7667 7669 7670 7671 7673 7677 7682 7684
## [741] 7685 7688 7693 7696 7718 7723 7738 7739 7743 7750
## [751] 7753 7755 7759 7770 7790 7795 7810 7811 7815 7822
## [761] 7825 7827 7831 7862 7867 7882 7883 7887 7894 7897
## [771] 7899 7903 7934 7939 7954 7955 7959 7966 7969 7971
## [781] 7975 8006 8011 8026 8027 8031 8038 8041 8043 8047
## [791] 8078 8083 8098 8099 8103 8110 8113 8115 8119 8143
## [801] 8153 8159 8175 8189 8215 8225 8231 8247 8261 8287
## [811] 8297 8303 8319 8333 8359 8369 8375 8391 8405 8431
## [821] 8441 8447 8463 8477 8527 8528 8532 8533 8535 8537
## [831] 8539 8541 8546 8548 8549 8552 8554 8555 8557 8561
## [841] 8564 8565 8566 8599 8600 8604 8605 8607 8609 8611
## [851] 8613 8618 8620 8621 8624 8626 8627 8629 8633 8636
## [861] 8637 8638 8671 8672 8676 8677 8679 8681 8683 8685
## [871] 8690 8692 8693 8696 8698 8699 8701 8705 8708 8709
## [881] 8710 8743 8744 8748 8749 8751 8753 8755 8757 8762
## [891] 8764 8765 8768 8770 8771 8773 8777 8780 8781 8782
## [901] 8815 8821 8822 8823 8825 8827 8828 8829 8834 8836
## [911] 8837 8845 8854 8887 8888 8891 8893 8895 8897 8899
## [921] 8905 8908 8909 8967 8977 8981 8982 9039 9049 9053
## [931] 9054 9111 9121 9125 9126 9175 9183 9196 9197 9247
## [941] 9255 9268 9269 9322 9325 9326 9327 9329 9331 9333
## [951] 9341 9363 9382 9392 9397 9399 9413 9421 9430 9438
## [961] 9440 9447 9455 9457 9463 9468 9469 9471 9475 9484
## [971] 9485 9543 9557 9615 9629 9687 9701 9751 9755 9757
## [981] 9758 9759 9761 9763 9773 9823 9828 9829 9831 9833
## [991] 9835 9837 9845 9846 9860 9899 9901 9902 9903 9905
## [1001] 9907 9909 9917 9920 9975 9989 10047 10061 10111 10117
## [1011] 10119 10121 10133 10183 10191 10193 10205 10261 10262 10263
## [1021] 10265 10267 10269 10274 10277 10283 10335 10349 10399 10400
## [1031] 10403 10407 10409 10410 10417 10420 10421 10422 10424 10431
## [1041] 10432 10479 10481 10485 10493 10549 10551 10565 10623 10637
## [1051] 10654 10695 10709 10726 10767 10781 10798 10839 10853 10870
## [1061] 10909 10911 10913 10915 10917 10922 10925 10928 10975 10976
## [1071] 10981 10983 10988 10994 10997 11000 11008 11010 11011 11012
## [1081] 11014 11047 11048 11053 11055 11060 11066 11069 11072 11080
## [1091] 11082 11083 11084 11086 11127 11129 11141 11144 11199 11201
## [1101] 11213 11216 11263 11268 11271 11273 11275 11278 11284 11285
## [1111] 11292 11298 11302 11335 11340 11343 11345 11347 11350 11356
## [1121] 11357 11364 11370 11374 11407 11412 11415 11417 11419 11422
## [1131] 11428 11429 11436 11442 11446 11479 11484 11487 11489 11491
## [1141] 11494 11500 11501 11508 11514 11518 11557 11559 11561 11573
## [1151] 11623 11624 11627 11629 11631 11633 11635 11637 11642 11644
## [1161] 11645 11646 11648 11653 11655 11656 11660 11695 11696 11699
## [1171] 11701 11703 11705 11707 11709 11714 11716 11717 11718 11720
## [1181] 11725 11727 11728 11732 11775 11777 11779 11789 11839 11840
## [1191] 11844 11845 11847 11849 11851 11854 11858 11860 11861 11869
## [1201] 11871 11876 11878 11911 11912 11916 11917 11919 11921 11923
## [1211] 11926 11930 11932 11933 11941 11943 11948 11950 11983 11987
## [1221] 11989 11990 11991 11993 11996 11997 12000 12001 12004 12005
## [1231] 12007 12011 12014 12015 12016 12018 12020 12022 12055 12059
## [1241] 12061 12062 12063 12065 12068 12069 12072 12073 12076 12077
## [1251] 12079 12083 12084 12086 12087 12088 12090 12092 12094 12127
## [1261] 12131 12133 12134 12135 12137 12140 12141 12144 12145 12148
## [1271] 12149 12151 12155 12158 12159 12160 12162 12164 12166 12199
## [1281] 12207 12209 12221 12267 12276 12277 12279 12281 12289 12292
## [1291] 12293 12295 12308 12310 12343 12347 12348 12349 12351 12353
## [1301] 12361 12365 12415 12419 12420 12421 12423 12425 12433 12437
## [1311] 12487 12488 12493 12495 12497 12499 12502 12504 12505 12507
## [1321] 12508 12509 12518 12520 12523 12524 12565 12566 12567 12569
## [1331] 12571 12572 12581 12584 12637 12639 12653 12709 12710 12711
## [1341] 12713 12725 12781 12782 12783 12785 12797 12821 12824 12828
## [1351] 12847 12848 12851 12853 12855 12865 12866 12869 12872 12884
## [1361] 12893 12896 12900 12919 12920 12923 12925 12927 12937 12938
## [1371] 12941 12944 12956 12999 13005 13013 13071 13073 13082 13084
## [1381] 13085 13100 13135 13136 13140 13141 13143 13147 13149 13154
## [1391] 13156 13157 13158 13165 13167 13168 13172 13174 13207 13208
## [1401] 13212 13213 13215 13219 13221 13226 13228 13229 13230 13237
## [1411] 13239 13240 13244 13246 13279 13280 13284 13285 13287 13291
## [1421] 13293 13298 13300 13301 13302 13309 13311 13312 13316 13318
## [1431] 13351 13352 13356 13357 13359 13363 13365 13370 13372 13373
## [1441] 13374 13381 13383 13384 13388 13390 13423 13424 13428 13429
## [1451] 13431 13435 13437 13442 13444 13445 13446 13453 13455 13456
## [1461] 13460 13462 13495 13503 13517 13573 13575 13577 13579 13581
## [1471] 13586 13589 13592 13597 13645 13647 13649 13651 13653 13658
## [1481] 13661 13664 13669 13711 13712 13717 13718 13719 13721 13723
## [1491] 13732 13733 13736 13783 13784 13789 13790 13791 13793 13795
## [1501] 13804 13805 13808 13837 13838 13841 13843 13851 13855 13860
## [1511] 13861 13863 13865 13867 13870 13876 13877 13879 13880 13887
## [1521] 13927 13928 13932 13933 13935 13937 13941 13949 13950 13999
## [1531] 14000 14004 14005 14007 14009 14013 14021 14022 14071 14076
## [1541] 14077 14079 14081 14083 14085 14089 14090 14092 14093 14108
## [1551] 14151 14165 14215 14216 14221 14223 14225 14237 14247 14253
## [1561] 14254 14293 14295 14309 14365 14367 14381 14439 14452 14453
## [1571] 14503 14509 14511 14513 14522 14525 14575 14581 14583 14585
## [1581] 14594 14597 14655 14669 14725 14727 14740 14741 14791 14797
## [1591] 14798 14799 14801 14803 14804 14810 14813 14814 14828 14834
## [1601] 14835 14851 14853 14855 14865 14872 14885 14943 14945 14957
## [1611] 15007 15008 15013 15014 15015 15017 15019 15029 15079 15087
## [1621] 15100 15101 15118 15159 15167 15178 15184 15190 15231 15239
## [1631] 15250 15256 15262 15303 15311 15322 15328 15334 15373 15375
## [1641] 15388 15389 15439 15447 15449 15461 15511 15519 15521 15533
## [1651] 15584 15587 15589 15590 15591 15605 15661 15663 15677 15733
## [1661] 15734 15735 15737 15741 15749 15799 15806 15807 15809 15813
## [1671] 15817 15821 15840 15879 15893 15951 15965 16023 16037 16095
## [1681] 16105 16106 16108 16109 16167 16177 16178 16180 16181 16231
## [1691] 16236 16237 16238 16239 16241 16243 16245 16252 16253 16258
## [1701] 16261 16265 16269 16270 16310 16311 16315 16316 16324 16325
## [1711] 16382 16383 16387 16388 16396 16397 16454 16455 16459 16460
## [1721] 16468 16469 16519 16523 16527 16541 16591 16595 16599 16613
## [1731] 16667 16669 16670 16671 16673 16675 16676 16677 16682 16685
## [1741] 16688 16690 16693 16701 16741 16743 16745 16747 16749 16753
## [1751] 16757 16760 16815 16825 16828 16829 16846 16887 16901 16956
## [1761] 16957 16958 16959 16961 16964 16965 16973 16980 17028 17029
## [1771] 17030 17031 17033 17036 17037 17045 17052 17100 17101 17102
## [1781] 17103 17105 17108 17109 17117 17124 17167 17168 17171 17172
## [1791] 17175 17177 17188 17189 17239 17240 17243 17244 17247 17249
## [1801] 17260 17261 17311 17312 17315 17316 17319 17321 17332 17333
## [1811] 17383 17384 17387 17388 17391 17393 17404 17405 17455 17456
## [1821] 17459 17460 17463 17465 17476 17477 17535 17549 17607 17621
## [1831] 17671 17676 17677 17679 17681 17693 17743 17748 17749 17751
## [1841] 17753 17765 17820 17821 17823 17837 17892 17893 17895 17909
## [1851] 17967 17981 18031 18032 18038 18039 18041 18043 18049 18052
## [1861] 18053 18055 18068 18103 18104 18110 18111 18113 18115 18121
## [1871] 18124 18125 18127 18140 18175 18180 18181 18182 18183 18185
## [1881] 18194 18196 18197 18202 18212 18213 18247 18252 18253 18254
## [1891] 18255 18257 18266 18268 18269 18274 18284 18285 18319 18327
## [1901] 18329 18341 18391 18399 18401 18413 18463 18471 18473 18485
## [1911] 18535 18543 18545 18557 18607 18615 18617 18629 18679 18687
## [1921] 18689 18701 18751 18759 18767 18769 18770 18772 18773 18776
## [1931] 18823 18828 18829 18830 18831 18833 18835 18837 18838 18840
## [1941] 18844 18845 18848 18852 18853 18856 18860 18862 18863 18867
## [1951] 18896 18900 18901 18902 18903 18905 18907 18939 18968 18972
## [1961] 18973 18974 18975 18977 18979 19039 19044 19045 19046 19047
## [1971] 19049 19051 19053 19054 19061 19064 19077 19111 19117 19118
## [1981] 19119 19121 19123 19124 19125 19130 19132 19133 19138 19139
## [1991] 19141 19148 19149 19150 19183 19189 19190 19191 19193 19195
## [2001] 19196 19197 19202 19204 19205 19210 19211 19213 19220 19221
## [2011] 19222 19263 19277 19328 19333 19335 19337 19339 19340 19341
## [2021] 19349 19350 19399 19403 19406 19407 19409 19418 19420 19421
## [2031] 19436 19471 19475 19478 19479 19481 19490 19492 19493 19508
## [2041] 19544 19548 19551 19553 19565 19616 19620 19623 19625 19637
## [2051] 19688 19692 19695 19697 19709 19767 19769 19781 19839 19841
## [2061] 19853 19911 19925 19979 19981 19982 19983 19985 19989 19996
## [2071] 19997 19998 20051 20053 20054 20055 20057 20061 20068 20069
## [2081] 20070 20123 20125 20126 20127 20129 20133 20140 20141 20142
## [2091] 20191 20199 20201 20213 20263 20269 20271 20273 20285 20335
## [2101] 20341 20343 20345 20357 20407 20408 20415 20429 20444 20479
## [2111] 20480 20487 20501 20516 20551 20552 20559 20573 20588 20623
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## [2681] 26321 26323 26324 26325 26332 26333 26334 26338 26341 26343
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## [9761] 85279 85285 85287 85289 85293 85297 85298 85300 85301 85304
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## [12881] 112351 112352 112357 112359 112361 112373 112429 112430 112431 112433
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## [12901] 112567 112575 112589 112639 112645 112646 112647 112649 112651 112660
## [12911] 112661 112672 112711 112715 112717 112718 112719 112721 112723 112730
## [12921] 112732 112733 112791 112805 112860 112861 112863 112865 112867 112868
## [12931] 112869 112877 112927 112933 112934 112935 112937 112941 112945 112949
## [12941] 112952 112955 112956 112957 112960 112964 112999 113005 113006 113007
## [12951] 113009 113013 113017 113021 113024 113027 113028 113029 113032 113036
## [12961] 113071 113077 113078 113079 113081 113083 113084 113085 113090 113092
## [12971] 113093 113098 113101 113108 113109 113110 113151 113153 113165 113223
## [12981] 113225 113237 113295 113297 113309 113359 113364 113367 113369 113377
## [12991] 113378 113381 113406 113439 113453 113472 113478 113511 113525 113544
## [13001] 113550 113583 113597 113616 113622 113655 113669 113688 113694 113727
## [13011] 113741 113760 113766 113799 113813 113832 113863 113868 113871 113885
## [13021] 113943 113957 113972 113973 113982 114015 114029 114044 114045 114087
## [13031] 114101 114151 114156 114157 114158 114159 114161 114163 114165 114166
## [13041] 114170 114172 114173 114223 114228 114229 114230 114231 114233 114235
## [13051] 114237 114238 114242 114244 114245 114295 114296 114301 114302 114303
## [13061] 114305 114307 114309 114314 114316 114317 114325 114327 114328 114330
## [13071] 114332 114334 114371 114373 114374 114375 114377 114379 114381 114389
## [13081] 114392 114397 114443 114445 114446 114447 114449 114451 114453 114461
## [13091] 114464 114469 114515 114517 114518 114519 114521 114523 114525 114533
## [13101] 114536 114541 114583 114591 114593 114604 114661 114663 114676 114677
## [13111] 114694 114733 114735 114748 114749 114766 114807 114821 114844 114850
## [13121] 114855 114871 114872 114873 114879 114881 114883 114893 114903 114948
## [13131] 114950 114951 114965 115020 115022 115023 115037 115092 115094 115095
## [13141] 115109 115159 115160 115165 115166 115167 115169 115171 115180 115181
## [13151] 115196 115231 115232 115237 115238 115239 115241 115243 115252 115253
## [13161] 115268 115303 115304 115309 115310 115311 115313 115315 115324 115325
## [13171] 115340 115375 115379 115380 115381 115383 115385 115387 115394 115396
## [13181] 115397 115398 115402 115405 115412 115447 115451 115452 115453 115455
## [13191] 115457 115459 115466 115468 115469 115470 115474 115477 115484 115519
## [13201] 115520 115525 115526 115527 115529 115532 115533 115540 115541 115549
## [13211] 115551 115552 115554 115556 115557 115558 115591 115596 115597 115599
## [13221] 115601 115603 115612 115613 115663 115664 115669 115670 115671 115673
## [13231] 115682 115684 115685 115735 115736 115741 115742 115743 115745 115754
## [13241] 115756 115757 115813 115814 115815 115817 115819 115820 115829 115885
## [13251] 115887 115901 115957 115959 115973 116023 116029 116031 116033 116035
## [13261] 116045 116095 116101 116103 116105 116107 116117 116167 116168 116171
## [13271] 116172 116173 116175 116177 116185 116188 116189 116245 116247 116249
## [13281] 116261 116311 116315 116317 116319 116329 116332 116333 116336 116342
## [13291] 116383 116387 116389 116391 116401 116404 116405 116408 116414 116455
## [13301] 116461 116462 116463 116465 116477 116527 116531 116532 116533 116535
## [13311] 116537 116539 116548 116549 116605 116607 116621 116677 116679 116693
## [13321] 116743 116748 116749 116750 116751 116753 116755 116765 116815 116820
## [13331] 116821 116822 116823 116825 116827 116837 116895 116909 116959 116964
## [13341] 116965 116966 116967 116969 116974 116978 116980 116981 116986 116988
## [13351] 116989 116996 116997 116998 116999 117031 117039 117041 117053 117109
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## [13371] 117213 117214 117247 117253 117255 117257 117265 117269 117323 117325
## [13381] 117326 117327 117329 117331 117333 117341 117344 117357 117399 117413
## [13391] 117471 117485 117543 117557 117607 117613 117614 117615 117617 117619
## [13401] 117621 117626 117629 117632 117634 117635 117637 117644 117645 117646
## [13411] 117687 117701 117751 117756 117757 117758 117759 117761 117763 117765
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## [13431] 117835 117837 117842 117845 117848 117853 117895 117901 117903 117905
## [13441] 117907 117910 117916 117917 117924 117934 117967 117968 117972 117973
## [13451] 117975 117977 117979 117988 117989 118047 118051 118061 118111 118116
## [13461] 118117 118119 118121 118123 118132 118133 118183 118184 118187 118189
## [13471] 118191 118205 118255 118256 118259 118261 118263 118277 118327 118328
## [13481] 118331 118333 118335 118349 118405 118407 118409 118411 118421 118437
## [13491] 118471 118479 118490 118493 118543 118551 118562 118565 118623 118637
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## [13511] 118789 118796 118837 118839 118841 118852 118853 118897 118902 118905
## [13521] 118913 118924 118925 118933 118969 118977 118985 118996 118997 119005
## [13531] 119047 119052 119053 119055 119059 119068 119069 119119 119124 119125
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## [13551] 119271 119277 119285 119288 119343 119349 119357 119360 119415 119421
## [13561] 119429 119432 119487 119493 119501 119504 119559 119565 119573 119576
## [13571] 119624 119628 119630 119631 119633 119635 119636 119644 119645 119701
## [13581] 119707 119717 119735 119767 119768 119771 119772 119775 119777 119779
## [13591] 119789 119847 119849 119860 119861 119911 119919 119921 119932 119933
## [13601] 119983 119991 119993 120004 120005 120059 120061 120062 120063 120065
## [13611] 120067 120077 120080 120135 120149 120204 120205 120207 120209 120211
## [13621] 120221 120276 120277 120279 120281 120283 120293 120343 120344 120349
## [13631] 120351 120353 120355 120364 120365 120415 120416 120421 120423 120425
## [13641] 120427 120436 120437 120476 120479 120487 120493 120494 120495 120532
## [13651] 120541 120542 120545 120555 120559 120565 120566 120567 120569 120571
## [13661] 120578 120581 120584 120631 120636 120637 120638 120639 120641 120643
## [13671] 120645 120650 120653 120709 120711 120725 120728 120781 120783 120797
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## [13751] 121575 121577 121581 121589 121604 121639 121644 121645 121647 121649
## [13761] 121653 121661 121676 121711 121716 121717 121719 121721 121723 121725
## [13771] 121733 121749 121791 121805 121855 121860 121861 121862 121863 121865
## [13781] 121867 121869 121877 121885 121892 121927 121932 121933 121934 121935
## [13791] 121937 121939 121941 121949 121957 121964 121999 122000 122005 122007
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## [13841] 122453 122503 122507 122509 122510 122511 122513 122517 122525 122583
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## [13861] 122797 122799 122801 122803 122813 122863 122871 122873 122875 122885
## [13871] 122935 122942 122943 122945 122947 122954 122956 122957 122958 122963
## [13881] 122964 122968 122970 122972 122974 123007 123012 123014 123015 123019
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## [14771] 131433 131435 131437 131438 131439 131443 131446 131452 131453 131456
## [14781] 131467 131468 131485 131491 131493 131495 131505 131507 131509 131510
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## [15481] 137412 137413 137415 137420 137421 137428 137429 137430 137451 137453
## [15491] 137455 137464 137474 137476 137477 137487 137489 137501 137513 137523
## [15501] 137525 137527 137536 137546 137548 137549 137559 137561 137573 137585
## [15511] 137595 137597 137599 137608 137618 137620 137621 137631 137633 137645
## [15521] 137657 137667 137669 137671 137680 137690 137692 137693 137703 137705
## [15531] 137717 137729 137744 137745 137751 137752 137756 137764 137766 137771
## [15541] 137772 137774 137775 137777 137779 137780 137789 137790 137824 137837
## [15551] 137839 137843 137846 137847 137849 137851 137852 137861 137863 137896
## [15561] 137909 137911 137915 137918 137919 137921 137923 137924 137933 137935
## [15571] 137968 137981 137983 137987 137990 137991 137993 137995 137996 138005
## [15581] 138007 138040 138053 138055 138059 138062 138063 138065 138067 138068
## [15591] 138077 138079 138098 138107 138110 138112 138115 138122 138133 138135
## [15601] 138137 138149 138158 138170 138179 138182 138184 138187 138194 138205
## [15611] 138207 138209 138221 138230 138242 138251 138254 138256 138259 138266
## [15621] 138277 138279 138281 138293 138302 138315 138317 138318 138320 138321
## [15631] 138322 138328 138331 138332 138334 138337 138341 138343 138346 138350
## [15641] 138351 138352 138353 138355 138359 138363 138372 138375 138378 138379
## [15651] 138381 138384 138387 138389 138390 138392 138393 138394 138400 138403
## [15661] 138404 138406 138409 138413 138415 138418 138422 138423 138424 138425
## [15671] 138427 138430 138431 138435 138444 138447 138450 138451 138453 138456
## [15681] 138458 138459 138460 138466 138470 138472 138481 138482 138487 138488
## [15691] 138492 138493 138495 138497 138499 138501 138509 138510 138529 138531
## [15701] 138534 138537 138543 138544 138546 138550 138551 138553 138554 138556
## [15711] 138560 138561 138565 138567 138568 138570 138577 138580 138581 138582
## [15721] 138583 138588 138591 138592 138594 138596 138598 138601 138603 138606
## [15731] 138609 138615 138616 138618 138622 138623 138625 138626 138628 138632
## [15741] 138633 138637 138639 138640 138642 138649 138652 138653 138654 138655
## [15751] 138660 138663 138664 138666 138668 138670 138673 138675 138678 138681
## [15761] 138687 138688 138690 138694 138695 138697 138698 138700 138704 138705
## [15771] 138709 138711 138712 138714 138721 138724 138725 138726 138727 138732
## [15781] 138735 138736 138738 138740 138742 138745 138747 138750 138753 138759
## [15791] 138760 138762 138766 138767 138769 138770 138772 138776 138777 138781
## [15801] 138783 138784 138786 138793 138796 138797 138798 138799 138804 138807
## [15811] 138808 138810 138812 138814 138817 138819 138822 138825 138831 138832
## [15821] 138834 138838 138839 138841 138842 138844 138848 138849 138853 138855
## [15831] 138856 138858 138865 138868 138869 138870 138871 138876 138879 138880
## [15841] 138882 138884 138886This gives us an vector of index values. We’ll save the vector for later use.
# Assign the output to an object called
## i_NA_row_01
i_NA_row_01 <- (NAs_row_01 == TRUE) # TODOWe can confirm that these parts of row 1 of our dataframe contain NAs
using the vector we made i_NA_row_01 and bracket notation.
Let’s look at the rows with NAs in column 1, and also see what’s in rows
2 and 3.
bird_snps_num_t[c(1:3)]## [1] 1 1 0bird_snps_num_t[i_NA_row_01]## [1] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [25] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [49] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [73] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [97] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [121] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [145] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [169] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [193] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [217] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [241] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [265] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [289] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [313] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [337] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [361] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [385] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [409] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [433] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [457] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [481] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [505] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [529] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [553] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [577] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [601] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [625] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [649] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [673] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [697] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [721] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [745] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [769] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [793] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [817] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [841] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [865] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [889] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [913] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [937] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [961] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [985] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1009] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1033] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1057] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1081] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1105] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1129] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1153] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1177] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1201] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1225] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1249] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1273] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1297] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1321] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1345] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1369] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1393] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1417] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1441] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1465] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1489] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1513] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1537] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1561] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1585] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1609] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1633] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1657] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1681] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1705] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1729] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1753] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1777] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1801] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1825] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1849] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1873] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1897] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1921] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1945] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1969] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [1993] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2017] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2041] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2065] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2089] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2113] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2137] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2161] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2185] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2209] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2233] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2257] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2281] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2305] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2329] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2353] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2377] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2401] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2425] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2449] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2473] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2497] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2521] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2545] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2569] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2593] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2617] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2641] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2665] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2689] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2713] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2737] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2761] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2785] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2809] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2833] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2857] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2881] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2905] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2929] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2953] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [2977] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3001] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3025] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3049] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3073] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3097] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3121] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3145] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3169] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3193] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3217] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3241] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3265] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3289] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3313] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3337] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3361] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3385] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3409] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3433] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3457] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3481] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3505] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3529] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3553] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3577] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3601] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3625] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3649] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3673] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3697] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3721] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3745] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3769] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3793] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3817] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3841] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3865] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3889] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3913] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3937] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3961] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [3985] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4009] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4033] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4057] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4081] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4105] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4129] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4153] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4177] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4201] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4225] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4249] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4273] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4297] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4321] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4345] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4369] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4393] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4417] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4441] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4465] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4489] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4513] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4537] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4561] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4585] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4609] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4633] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4657] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4681] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4705] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4729] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4753] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4777] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4801] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4825] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4849] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4873] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4897] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4921] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4945] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4969] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [4993] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5017] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5041] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5065] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5089] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5113] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5137] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5161] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5185] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5209] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5233] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5257] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5281] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5305] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5329] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [5353] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
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## [11713] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [11737] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [11761] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [11785] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [11809] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [11833] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [11857] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [11881] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [11905] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [11929] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [11953] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [11977] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12001] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12025] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12049] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12073] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12097] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12121] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12145] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12169] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12193] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12217] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12241] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12265] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12289] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12313] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12337] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12361] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12385] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12409] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12433] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12457] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12481] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12505] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12529] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12553] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12577] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12601] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12625] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12649] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12673] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12697] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12721] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12745] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12769] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12793] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12817] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12841] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12865] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12889] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12913] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12937] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12961] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [12985] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13009] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13033] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13057] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13081] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13105] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13129] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13153] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13177] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13201] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13225] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13249] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13273] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13297] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13321] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13345] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13369] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13393] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13417] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13441] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13465] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13489] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13513] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13537] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13561] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13585] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13609] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13633] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13657] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13681] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13705] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13729] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13753] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13777] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13801] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13825] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13849] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13873] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13897] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13921] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13945] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13969] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [13993] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14017] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14041] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14065] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14089] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14113] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14137] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14161] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14185] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14209] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14233] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14257] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14281] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14305] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14329] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14353] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14377] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14401] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14425] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14449] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14473] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14497] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14521] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14545] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14569] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14593] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14617] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14641] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14665] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14689] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14713] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14737] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14761] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14785] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14809] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14833] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14857] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14881] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14905] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14929] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14953] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [14977] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15001] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15025] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15049] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15073] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15097] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15121] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15145] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15169] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15193] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15217] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15241] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15265] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15289] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15313] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15337] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15361] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15385] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15409] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15433] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15457] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15481] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15505] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15529] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15553] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15577] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15601] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15625] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15649] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15673] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15697] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15721] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15745] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15769] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15793] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15817] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
## [15841] NA NA NAA NA-seeking function
Here’s a function that will look for NAs in single column or vector, and tell us the index values.
find_NAs <- function(x){
NAs_TF <- is.na(x)
i_NA <- which(NAs_TF == TRUE)
N_NA <- length(i_NA)
cat("Results:",N_NA, "NAs present\n.")
return(i_NA)
}Let’s test it on the first row of our data.
# run find_NAs() on the first row of
## bird_snps_num_t, using bracket notation [1,]
find_NAs(bird_snps_num_t) ## Results: 15843 NAs present
## .## [1] 31 36 37 39 41 43 45 50 52 53
## [11] 103 108 109 111 113 115 117 122 124 125
## [21] 181 183 185 197 251 253 255 257 269 323
## [31] 325 327 329 341 399 413 471 485 543 557
## [41] 607 614 615 617 629 685 687 689 699 701
## [51] 751 759 761 763 772 773 783 823 831 833
## [61] 835 844 845 855 895 903 905 907 916 917
## [71] 927 972 973 974 975 977 979 989 1011 1036
## [81] 1047 1049 1061 1115 1117 1118 1119 1121 1123 1125
## [91] 1133 1136 1139 1141 1149 1191 1204 1205 1261 1263
## [101] 1265 1267 1269 1277 1327 1328 1331 1333 1334 1335
## [111] 1337 1346 1348 1349 1360 1366 1407 1409 1418 1421
## [121] 1477 1479 1485 1493 1543 1548 1549 1551 1553 1555
## [131] 1558 1561 1562 1564 1565 1566 1594 1615 1616 1621
## [141] 1623 1625 1634 1636 1637 1652 1653 1666 1687 1688
## [151] 1693 1695 1697 1706 1708 1709 1724 1725 1738 1759
## [161] 1760 1765 1767 1769 1778 1780 1781 1796 1797 1810
## [171] 1831 1832 1837 1839 1841 1850 1852 1853 1868 1869
## [181] 1882 1903 1904 1909 1911 1913 1922 1924 1925 1940
## [191] 1941 1981 1983 1985 1989 1997 2055 2069 2119 2124
## [201] 2126 2127 2129 2131 2140 2141 2191 2192 2196 2199
## [211] 2201 2212 2213 2263 2264 2268 2271 2273 2284 2285
## [221] 2335 2336 2340 2343 2345 2356 2357 2407 2408 2413
## [231] 2415 2417 2419 2426 2428 2429 2479 2480 2485 2487
## [241] 2489 2491 2498 2500 2501 2557 2559 2573 2623 2629
## [251] 2631 2633 2645 2703 2705 2717 2775 2781 2785 2786
## [261] 2788 2789 2790 2797 2799 2800 2804 2806 2839 2843
## [271] 2845 2846 2847 2849 2851 2858 2861 2864 2911 2919
## [281] 2921 2933 2989 2990 2991 2993 2995 3005 3055 3063
## [291] 3065 3077 3135 3137 3139 3149 3207 3209 3211 3221
## [301] 3271 3276 3279 3283 3293 3347 3349 3350 3351 3361
## [311] 3365 3419 3421 3422 3423 3433 3437 3495 3499 3500
## [321] 3509 3559 3560 3565 3567 3569 3571 3581 3639 3641
## [331] 3645 3650 3652 3653 3711 3713 3717 3722 3724 3725
## [341] 3750 3754 3771 3775 3776 3781 3782 3783 3785 3788
## [351] 3794 3796 3797 3800 3805 3813 3853 3855 3869 3925
## [361] 3926 3927 3929 3931 3933 3934 3941 3944 3949 3958
## [371] 3997 3998 3999 4001 4003 4005 4012 4013 4021 4026
## [381] 4063 4071 4073 4085 4135 4141 4142 4143 4145 4149
## [391] 4150 4156 4157 4163 4164 4172 4174 4175 4215 4221
## [401] 4229 4279 4285 4287 4289 4291 4301 4359 4373 4429
## [411] 4431 4435 4445 4496 4501 4502 4503 4505 4507 4509
## [421] 4517 4525 4532 4575 4589 4639 4644 4645 4647 4649
## [431] 4651 4652 4660 4661 4711 4716 4717 4719 4721 4723
## [441] 4724 4732 4733 4789 4791 4793 4795 4797 4798 4804
## [451] 4805 4806 4808 4810 4813 4816 4821 4855 4860 4861
## [461] 4862 4863 4865 4867 4869 4877 4885 4893 4894 4927
## [471] 4933 4935 4937 4939 4949 4974 4999 5004 5005 5007
## [481] 5008 5009 5011 5020 5021 5071 5072 5076 5077 5079
## [491] 5081 5093 5143 5144 5148 5149 5151 5153 5165 5215
## [501] 5216 5221 5223 5225 5236 5237 5287 5291 5293 5295
## [511] 5297 5303 5306 5308 5309 5310 5324 5325 5359 5364
## [521] 5365 5367 5369 5371 5372 5373 5378 5380 5381 5382
## [531] 5384 5387 5391 5396 5398 5431 5436 5437 5439 5441
## [541] 5443 5444 5445 5450 5452 5453 5454 5456 5459 5463
## [551] 5468 5470 5503 5504 5509 5510 5511 5513 5515 5517
## [561] 5524 5525 5532 5533 5540 5541 5542 5575 5580 5581
## [571] 5583 5585 5597 5647 5653 5655 5669 5727 5741 5795
## [581] 5797 5798 5799 5801 5803 5804 5805 5810 5813 5816
## [591] 5818 5819 5821 5828 5829 5830 5852 5863 5867 5869
## [601] 5871 5873 5884 5885 5940 5942 5943 5954 5957 6012
## [611] 6014 6015 6026 6029 6087 6089 6101 6151 6157 6159
## [621] 6161 6173 6223 6229 6231 6233 6245 6301 6302 6303
## [631] 6317 6373 6374 6375 6389 6445 6446 6447 6461 6511
## [641] 6512 6517 6518 6519 6521 6523 6525 6530 6533 6539
## [651] 6541 6542 6549 6583 6589 6591 6593 6598 6602 6605
## [661] 6620 6655 6660 6663 6677 6735 6749 6807 6821 6839
## [671] 6877 6879 6893 6949 6951 6965 7021 7023 7025 7037
## [681] 7095 7109 7167 7181 7231 7236 7237 7239 7241 7246
## [691] 7253 7268 7269 7270 7309 7311 7313 7315 7316 7324
## [701] 7325 7342 7383 7385 7397 7447 7448 7455 7457 7459
## [711] 7465 7469 7472 7519 7520 7525 7527 7529 7531 7540
## [721] 7541 7556 7591 7592 7597 7599 7601 7603 7612 7613
## [731] 7628 7663 7667 7669 7670 7671 7673 7677 7682 7684
## [741] 7685 7688 7693 7696 7718 7723 7738 7739 7743 7750
## [751] 7753 7755 7759 7770 7790 7795 7810 7811 7815 7822
## [761] 7825 7827 7831 7862 7867 7882 7883 7887 7894 7897
## [771] 7899 7903 7934 7939 7954 7955 7959 7966 7969 7971
## [781] 7975 8006 8011 8026 8027 8031 8038 8041 8043 8047
## [791] 8078 8083 8098 8099 8103 8110 8113 8115 8119 8143
## [801] 8153 8159 8175 8189 8215 8225 8231 8247 8261 8287
## [811] 8297 8303 8319 8333 8359 8369 8375 8391 8405 8431
## [821] 8441 8447 8463 8477 8527 8528 8532 8533 8535 8537
## [831] 8539 8541 8546 8548 8549 8552 8554 8555 8557 8561
## [841] 8564 8565 8566 8599 8600 8604 8605 8607 8609 8611
## [851] 8613 8618 8620 8621 8624 8626 8627 8629 8633 8636
## [861] 8637 8638 8671 8672 8676 8677 8679 8681 8683 8685
## [871] 8690 8692 8693 8696 8698 8699 8701 8705 8708 8709
## [881] 8710 8743 8744 8748 8749 8751 8753 8755 8757 8762
## [891] 8764 8765 8768 8770 8771 8773 8777 8780 8781 8782
## [901] 8815 8821 8822 8823 8825 8827 8828 8829 8834 8836
## [911] 8837 8845 8854 8887 8888 8891 8893 8895 8897 8899
## [921] 8905 8908 8909 8967 8977 8981 8982 9039 9049 9053
## [931] 9054 9111 9121 9125 9126 9175 9183 9196 9197 9247
## [941] 9255 9268 9269 9322 9325 9326 9327 9329 9331 9333
## [951] 9341 9363 9382 9392 9397 9399 9413 9421 9430 9438
## [961] 9440 9447 9455 9457 9463 9468 9469 9471 9475 9484
## [971] 9485 9543 9557 9615 9629 9687 9701 9751 9755 9757
## [981] 9758 9759 9761 9763 9773 9823 9828 9829 9831 9833
## [991] 9835 9837 9845 9846 9860 9899 9901 9902 9903 9905
## [1001] 9907 9909 9917 9920 9975 9989 10047 10061 10111 10117
## [1011] 10119 10121 10133 10183 10191 10193 10205 10261 10262 10263
## [1021] 10265 10267 10269 10274 10277 10283 10335 10349 10399 10400
## [1031] 10403 10407 10409 10410 10417 10420 10421 10422 10424 10431
## [1041] 10432 10479 10481 10485 10493 10549 10551 10565 10623 10637
## [1051] 10654 10695 10709 10726 10767 10781 10798 10839 10853 10870
## [1061] 10909 10911 10913 10915 10917 10922 10925 10928 10975 10976
## [1071] 10981 10983 10988 10994 10997 11000 11008 11010 11011 11012
## [1081] 11014 11047 11048 11053 11055 11060 11066 11069 11072 11080
## [1091] 11082 11083 11084 11086 11127 11129 11141 11144 11199 11201
## [1101] 11213 11216 11263 11268 11271 11273 11275 11278 11284 11285
## [1111] 11292 11298 11302 11335 11340 11343 11345 11347 11350 11356
## [1121] 11357 11364 11370 11374 11407 11412 11415 11417 11419 11422
## [1131] 11428 11429 11436 11442 11446 11479 11484 11487 11489 11491
## [1141] 11494 11500 11501 11508 11514 11518 11557 11559 11561 11573
## [1151] 11623 11624 11627 11629 11631 11633 11635 11637 11642 11644
## [1161] 11645 11646 11648 11653 11655 11656 11660 11695 11696 11699
## [1171] 11701 11703 11705 11707 11709 11714 11716 11717 11718 11720
## [1181] 11725 11727 11728 11732 11775 11777 11779 11789 11839 11840
## [1191] 11844 11845 11847 11849 11851 11854 11858 11860 11861 11869
## [1201] 11871 11876 11878 11911 11912 11916 11917 11919 11921 11923
## [1211] 11926 11930 11932 11933 11941 11943 11948 11950 11983 11987
## [1221] 11989 11990 11991 11993 11996 11997 12000 12001 12004 12005
## [1231] 12007 12011 12014 12015 12016 12018 12020 12022 12055 12059
## [1241] 12061 12062 12063 12065 12068 12069 12072 12073 12076 12077
## [1251] 12079 12083 12084 12086 12087 12088 12090 12092 12094 12127
## [1261] 12131 12133 12134 12135 12137 12140 12141 12144 12145 12148
## [1271] 12149 12151 12155 12158 12159 12160 12162 12164 12166 12199
## [1281] 12207 12209 12221 12267 12276 12277 12279 12281 12289 12292
## [1291] 12293 12295 12308 12310 12343 12347 12348 12349 12351 12353
## [1301] 12361 12365 12415 12419 12420 12421 12423 12425 12433 12437
## [1311] 12487 12488 12493 12495 12497 12499 12502 12504 12505 12507
## [1321] 12508 12509 12518 12520 12523 12524 12565 12566 12567 12569
## [1331] 12571 12572 12581 12584 12637 12639 12653 12709 12710 12711
## [1341] 12713 12725 12781 12782 12783 12785 12797 12821 12824 12828
## [1351] 12847 12848 12851 12853 12855 12865 12866 12869 12872 12884
## [1361] 12893 12896 12900 12919 12920 12923 12925 12927 12937 12938
## [1371] 12941 12944 12956 12999 13005 13013 13071 13073 13082 13084
## [1381] 13085 13100 13135 13136 13140 13141 13143 13147 13149 13154
## [1391] 13156 13157 13158 13165 13167 13168 13172 13174 13207 13208
## [1401] 13212 13213 13215 13219 13221 13226 13228 13229 13230 13237
## [1411] 13239 13240 13244 13246 13279 13280 13284 13285 13287 13291
## [1421] 13293 13298 13300 13301 13302 13309 13311 13312 13316 13318
## [1431] 13351 13352 13356 13357 13359 13363 13365 13370 13372 13373
## [1441] 13374 13381 13383 13384 13388 13390 13423 13424 13428 13429
## [1451] 13431 13435 13437 13442 13444 13445 13446 13453 13455 13456
## [1461] 13460 13462 13495 13503 13517 13573 13575 13577 13579 13581
## [1471] 13586 13589 13592 13597 13645 13647 13649 13651 13653 13658
## [1481] 13661 13664 13669 13711 13712 13717 13718 13719 13721 13723
## [1491] 13732 13733 13736 13783 13784 13789 13790 13791 13793 13795
## [1501] 13804 13805 13808 13837 13838 13841 13843 13851 13855 13860
## [1511] 13861 13863 13865 13867 13870 13876 13877 13879 13880 13887
## [1521] 13927 13928 13932 13933 13935 13937 13941 13949 13950 13999
## [1531] 14000 14004 14005 14007 14009 14013 14021 14022 14071 14076
## [1541] 14077 14079 14081 14083 14085 14089 14090 14092 14093 14108
## [1551] 14151 14165 14215 14216 14221 14223 14225 14237 14247 14253
## [1561] 14254 14293 14295 14309 14365 14367 14381 14439 14452 14453
## [1571] 14503 14509 14511 14513 14522 14525 14575 14581 14583 14585
## [1581] 14594 14597 14655 14669 14725 14727 14740 14741 14791 14797
## [1591] 14798 14799 14801 14803 14804 14810 14813 14814 14828 14834
## [1601] 14835 14851 14853 14855 14865 14872 14885 14943 14945 14957
## [1611] 15007 15008 15013 15014 15015 15017 15019 15029 15079 15087
## [1621] 15100 15101 15118 15159 15167 15178 15184 15190 15231 15239
## [1631] 15250 15256 15262 15303 15311 15322 15328 15334 15373 15375
## [1641] 15388 15389 15439 15447 15449 15461 15511 15519 15521 15533
## [1651] 15584 15587 15589 15590 15591 15605 15661 15663 15677 15733
## [1661] 15734 15735 15737 15741 15749 15799 15806 15807 15809 15813
## [1671] 15817 15821 15840 15879 15893 15951 15965 16023 16037 16095
## [1681] 16105 16106 16108 16109 16167 16177 16178 16180 16181 16231
## [1691] 16236 16237 16238 16239 16241 16243 16245 16252 16253 16258
## [1701] 16261 16265 16269 16270 16310 16311 16315 16316 16324 16325
## [1711] 16382 16383 16387 16388 16396 16397 16454 16455 16459 16460
## [1721] 16468 16469 16519 16523 16527 16541 16591 16595 16599 16613
## [1731] 16667 16669 16670 16671 16673 16675 16676 16677 16682 16685
## [1741] 16688 16690 16693 16701 16741 16743 16745 16747 16749 16753
## [1751] 16757 16760 16815 16825 16828 16829 16846 16887 16901 16956
## [1761] 16957 16958 16959 16961 16964 16965 16973 16980 17028 17029
## [1771] 17030 17031 17033 17036 17037 17045 17052 17100 17101 17102
## [1781] 17103 17105 17108 17109 17117 17124 17167 17168 17171 17172
## [1791] 17175 17177 17188 17189 17239 17240 17243 17244 17247 17249
## [1801] 17260 17261 17311 17312 17315 17316 17319 17321 17332 17333
## [1811] 17383 17384 17387 17388 17391 17393 17404 17405 17455 17456
## [1821] 17459 17460 17463 17465 17476 17477 17535 17549 17607 17621
## [1831] 17671 17676 17677 17679 17681 17693 17743 17748 17749 17751
## [1841] 17753 17765 17820 17821 17823 17837 17892 17893 17895 17909
## [1851] 17967 17981 18031 18032 18038 18039 18041 18043 18049 18052
## [1861] 18053 18055 18068 18103 18104 18110 18111 18113 18115 18121
## [1871] 18124 18125 18127 18140 18175 18180 18181 18182 18183 18185
## [1881] 18194 18196 18197 18202 18212 18213 18247 18252 18253 18254
## [1891] 18255 18257 18266 18268 18269 18274 18284 18285 18319 18327
## [1901] 18329 18341 18391 18399 18401 18413 18463 18471 18473 18485
## [1911] 18535 18543 18545 18557 18607 18615 18617 18629 18679 18687
## [1921] 18689 18701 18751 18759 18767 18769 18770 18772 18773 18776
## [1931] 18823 18828 18829 18830 18831 18833 18835 18837 18838 18840
## [1941] 18844 18845 18848 18852 18853 18856 18860 18862 18863 18867
## [1951] 18896 18900 18901 18902 18903 18905 18907 18939 18968 18972
## [1961] 18973 18974 18975 18977 18979 19039 19044 19045 19046 19047
## [1971] 19049 19051 19053 19054 19061 19064 19077 19111 19117 19118
## [1981] 19119 19121 19123 19124 19125 19130 19132 19133 19138 19139
## [1991] 19141 19148 19149 19150 19183 19189 19190 19191 19193 19195
## [2001] 19196 19197 19202 19204 19205 19210 19211 19213 19220 19221
## [2011] 19222 19263 19277 19328 19333 19335 19337 19339 19340 19341
## [2021] 19349 19350 19399 19403 19406 19407 19409 19418 19420 19421
## [2031] 19436 19471 19475 19478 19479 19481 19490 19492 19493 19508
## [2041] 19544 19548 19551 19553 19565 19616 19620 19623 19625 19637
## [2051] 19688 19692 19695 19697 19709 19767 19769 19781 19839 19841
## [2061] 19853 19911 19925 19979 19981 19982 19983 19985 19989 19996
## [2071] 19997 19998 20051 20053 20054 20055 20057 20061 20068 20069
## [2081] 20070 20123 20125 20126 20127 20129 20133 20140 20141 20142
## [2091] 20191 20199 20201 20213 20263 20269 20271 20273 20285 20335
## [2101] 20341 20343 20345 20357 20407 20408 20415 20429 20444 20479
## [2111] 20480 20487 20501 20516 20551 20552 20559 20573 20588 20623
## [2121] 20630 20631 20633 20645 20695 20702 20703 20705 20717 20740
## [2131] 20747 20748 20750 20759 20767 20771 20773 20775 20777 20779
## [2141] 20780 20781 20786 20789 20797 20800 20804 20805 20806 20839
## [2151] 20840 20845 20846 20847 20849 20851 20861 20876 20917 20918
## [2161] 20919 20923 20933 20991 21005 21055 21060 21061 21063 21065
## [2171] 21069 21076 21077 21078 21087 21092 21127 21132 21133 21135
## [2181] 21137 21141 21148 21149 21150 21159 21164 21199 21204 21205
## [2191] 21206 21207 21209 21211 21213 21214 21218 21220 21221 21222
## [2201] 21236 21271 21276 21277 21278 21279 21281 21283 21285 21286
## [2211] 21290 21292 21293 21294 21308 21343 21348 21349 21350 21351
## [2221] 21353 21355 21357 21358 21362 21364 21365 21366 21380 21415
## [2231] 21421 21423 21425 21427 21436 21437 21495 21497 21509 21855
## [2241] 21857 21861 21869 21919 21920 21925 21926 21927 21929 21931
## [2251] 21940 21941 21942 21944 21951 21953 21954 21956 21991 21992
## [2261] 21997 21999 22001 22003 22004 22005 22012 22013 22018 22021
## [2271] 22024 22028 22029 22030 22050 22067 22071 22073 22075 22085
## [2281] 22122 22139 22143 22145 22147 22157 22207 22215 22219 22229
## [2291] 22279 22287 22291 22301 22351 22359 22361 22363 22373 22431
## [2301] 22433 22435 22444 22445 22503 22505 22507 22516 22517 22575
## [2311] 22577 22579 22588 22589 22647 22649 22651 22660 22661 22719
## [2321] 22730 22733 22784 22789 22791 22796 22805 22844 22862 22863
## [2331] 22877 22916 22934 22935 22949 22988 23006 23007 23021 23060
## [2341] 23078 23079 23093 23165 23237 23243 23293 23295 23297 23301
## [2351] 23305 23309 23312 23348 23359 23365 23366 23367 23369 23371
## [2361] 23380 23381 23382 23389 23396 23420 23431 23437 23438 23439
## [2371] 23441 23443 23452 23453 23454 23461 23468 23503 23508 23509
## [2381] 23511 23513 23525 23542 23575 23580 23581 23583 23585 23597
## [2391] 23614 23647 23653 23655 23657 23669 23680 23686 23719 23725
## [2401] 23727 23729 23741 23752 23758 23791 23797 23799 23801 23813
## [2411] 23824 23830 23871 23873 23882 23885 23888 23902 23941 23943
## [2421] 23957 24007 24008 24012 24013 24015 24017 24019 24021 24023
## [2431] 24026 24029 24032 24037 24040 24044 24045 24046 24079 24080
## [2441] 24084 24085 24087 24089 24091 24093 24095 24098 24101 24104
## [2451] 24109 24112 24114 24116 24117 24118 24151 24152 24156 24157
## [2461] 24159 24161 24163 24165 24167 24170 24173 24176 24181 24184
## [2471] 24188 24189 24190 24223 24229 24230 24231 24233 24235 24244
## [2481] 24245 24246 24295 24301 24302 24303 24305 24307 24316 24317
## [2491] 24318 24367 24375 24381 24382 24385 24386 24388 24389 24392
## [2501] 24404 24439 24447 24453 24454 24458 24460 24461 24464 24476
## [2511] 24511 24516 24519 24521 24530 24532 24533 24548 24583 24591
## [2521] 24593 24605 24655 24663 24665 24677 24735 24749 24799 24807
## [2531] 24821 24871 24877 24879 24881 24883 24892 24893 24943 24949
## [2541] 24951 24953 24955 24964 24965 25023 25037 25093 25095 25109
## [2551] 25159 25166 25167 25181 25182 25231 25238 25239 25253 25254
## [2561] 25311 25325 25375 25376 25381 25382 25383 25385 25387 25397
## [2571] 25414 25447 25448 25453 25454 25455 25457 25459 25461 25462
## [2581] 25466 25469 25470 25474 25475 25477 25478 25484 25487 25519
## [2591] 25520 25525 25526 25527 25529 25531 25533 25534 25538 25541
## [2601] 25542 25546 25547 25549 25550 25556 25559 25591 25592 25599
## [2611] 25609 25610 25613 25663 25664 25671 25681 25682 25685 25741
## [2621] 25743 25745 25747 25749 25757 25807 25815 25817 25829 25885
## [2631] 25886 25887 25889 25891 25893 25898 25901 25951 25959 25963
## [2641] 25973 26023 26031 26035 26045 26095 26103 26107 26117 26167
## [2651] 26168 26172 26173 26174 26175 26177 26181 26189 26213 26214
## [2661] 26221 26222 26227 26228 26232 26239 26243 26244 26246 26249
## [2671] 26251 26258 26261 26264 26265 26298 26312 26316 26317 26319
## [2681] 26321 26323 26324 26325 26332 26333 26334 26338 26341 26343
## [2691] 26348 26350 26370 26384 26388 26389 26391 26393 26395 26396
## [2701] 26397 26404 26405 26406 26410 26413 26415 26420 26422 26455
## [2711] 26456 26459 26460 26462 26463 26465 26476 26477 26527 26528
## [2721] 26531 26532 26534 26535 26537 26548 26549 26599 26607 26621
## [2731] 26675 26678 26679 26681 26683 26692 26693 26743 26747 26749
## [2741] 26751 26753 26755 26765 26815 26823 26837 26887 26895 26909
## [2751] 26964 26965 26966 26967 26969 26971 26973 26981 26989 26997
## [2761] 27039 27053 27079 27104 27110 27111 27122 27125 27128 27151
## [2771] 27176 27182 27183 27194 27197 27200 27251 27253 27255 27257
## [2781] 27259 27260 27261 27266 27268 27269 27272 27275 27277 27282
## [2791] 27284 27285 27286 27319 27320 27325 27326 27327 27329 27340
## [2801] 27341 27342 27344 27396 27397 27399 27401 27413 27421 27468
## [2811] 27469 27471 27473 27485 27493 27535 27539 27543 27545 27556
## [2821] 27557 27607 27608 27613 27615 27617 27619 27626 27628 27629
## [2831] 27679 27687 27701 27756 27759 27773 27823 27829 27831 27833
## [2841] 27835 27842 27843 27845 27848 27860 27903 27905 27907 27909
## [2851] 27917 27971 27973 27974 27975 27977 27979 27986 27988 27989
## [2861] 27996 27997 28004 28039 28040 28045 28046 28047 28049 28052
## [2871] 28058 28061 28062 28069 28076 28112 28115 28116 28119 28121
## [2881] 28123 28133 28184 28187 28188 28191 28193 28195 28205 28255
## [2891] 28256 28261 28262 28263 28265 28276 28277 28292 28306 28311
## [2901] 28327 28328 28333 28334 28335 28337 28339 28342 28346 28348
## [2911] 28349 28350 28355 28357 28362 28405 28407 28409 28421 28471
## [2921] 28475 28477 28479 28481 28493 28496 28543 28547 28549 28551
## [2931] 28553 28565 28568 28615 28620 28621 28623 28625 28627 28628
## [2941] 28637 28687 28692 28693 28695 28697 28699 28700 28709 28765
## [2951] 28767 28769 28781 28782 28796 28837 28839 28841 28853 28854
## [2961] 28868 28909 28911 28913 28925 28926 28940 28976 28979 28981
## [2971] 28983 28985 28987 28989 28993 28994 28996 28997 29008 29048
## [2981] 29051 29053 29055 29057 29059 29061 29065 29066 29068 29069
## [2991] 29080 29124 29126 29127 29129 29140 29141 29199 29201 29213
## [3001] 29216 29271 29273 29285 29288 29335 29336 29341 29342 29343
## [3011] 29345 29347 29357 29358 29374 29407 29412 29413 29414 29415
## [3021] 29417 29429 29485 29487 29501 29557 29559 29561 29573 29629
## [3031] 29631 29633 29645 29695 29702 29703 29705 29716 29717 29767
## [3041] 29773 29775 29777 29781 29789 29795 29796 29797 29804 29805
## [3051] 29839 29845 29847 29849 29851 29858 29861 29917 29919 29933
## [3061] 29988 29989 29991 30005 30060 30061 30063 30077 30132 30133
## [3071] 30135 30149 30199 30205 30206 30207 30209 30211 30221 30229
## [3081] 30236 30237 30238 30271 30277 30278 30279 30281 30283 30293
## [3091] 30301 30308 30309 30310 30343 30349 30350 30351 30353 30355
## [3101] 30365 30373 30380 30381 30382 30423 30427 30428 30437 30495
## [3111] 30499 30500 30509 30567 30571 30572 30581 30631 30632 30636
## [3121] 30639 30643 30653 30703 30704 30708 30711 30715 30725 30775
## [3131] 30776 30780 30783 30787 30797 30847 30848 30852 30855 30859
## [3141] 30869 30925 30927 30929 30940 30941 30991 30992 30996 30998
## [3151] 30999 31001 31003 31012 31013 31063 31064 31071 31073 31085
## [3161] 31135 31136 31143 31145 31157 31207 31208 31215 31217 31229
## [3171] 31279 31280 31287 31289 31301 31351 31356 31357 31359 31361
## [3181] 31373 31423 31428 31429 31431 31433 31435 31437 31444 31445
## [3191] 31456 31460 31462 31495 31496 31501 31503 31505 31516 31517
## [3201] 31528 31532 31533 31534 31554 31567 31575 31577 31579 31582
## [3211] 31588 31589 31644 31646 31647 31648 31649 31650 31661 31716
## [3221] 31718 31719 31720 31721 31722 31733 31788 31790 31791 31792
## [3231] 31793 31794 31805 31863 31877 31933 31935 31949 31999 32007
## [3241] 32009 32021 32076 32079 32081 32083 32093 32149 32150 32151
## [3251] 32153 32155 32157 32165 32183 32222 32223 32229 32237 32243
## [3261] 32245 32252 32294 32295 32301 32309 32315 32317 32324 32366
## [3271] 32367 32373 32381 32387 32389 32396 32439 32445 32453 32492
## [3281] 32503 32505 32506 32511 32513 32522 32524 32525 32528 32536
## [3291] 32540 32564 32575 32577 32578 32579 32583 32585 32594 32596
## [3301] 32597 32600 32608 32612 32636 32647 32649 32650 32655 32657
## [3311] 32666 32668 32669 32672 32680 32684 32708 32719 32721 32722
## [3321] 32727 32729 32738 32740 32741 32744 32752 32756 32780 32791
## [3331] 32793 32794 32799 32801 32810 32812 32813 32816 32824 32828
## [3341] 32852 32863 32865 32866 32871 32873 32882 32884 32885 32888
## [3351] 32896 32900 32924 32935 32937 32938 32943 32945 32954 32956
## [3361] 32957 32960 32968 32972 32996 33007 33009 33010 33015 33017
## [3371] 33026 33028 33029 33032 33040 33044 33087 33089 33101 33159
## [3381] 33163 33173 33223 33229 33230 33231 33233 33235 33237 33242
## [3391] 33245 33251 33253 33262 33295 33301 33302 33303 33305 33307
## [3401] 33309 33314 33317 33323 33325 33334 33367 33373 33374 33375
## [3411] 33377 33379 33381 33386 33389 33395 33397 33406 33439 33447
## [3421] 33461 33511 33512 33515 33516 33517 33519 33521 33533 33534
## [3431] 33583 33584 33587 33588 33589 33591 33593 33605 33606 33655
## [3441] 33661 33663 33665 33675 33677 33692 33694 33727 33733 33734
## [3451] 33735 33737 33739 33741 33749 33754 33764 33765 33799 33805
## [3461] 33806 33807 33809 33811 33813 33821 33826 33836 33837 33871
## [3471] 33875 33876 33877 33879 33881 33885 33893 33943 33947 33948
## [3481] 33949 33951 33953 33965 34023 34037 34095 34109 34167 34181
## [3491] 34231 34237 34238 34239 34241 34249 34250 34252 34253 34254
## [3501] 34303 34309 34311 34325 34383 34385 34397 34453 34455 34457
## [3511] 34469 34525 34527 34529 34541 34597 34599 34601 34613 34664
## [3521] 34667 34669 34670 34671 34673 34676 34685 34741 34743 34745
## [3531] 34747 34749 34750 34756 34757 34763 34764 34765 34772 34774
## [3541] 34775 34807 34815 34817 34829 34879 34885 34886 34887 34889
## [3551] 34891 34893 34899 34901 34904 34907 34909 34917 34918 34951
## [3561] 34957 34958 34959 34961 34963 34965 34971 34973 34976 34979
## [3571] 34981 34989 34990 35023 35024 35029 35031 35033 35041 35044
## [3581] 35045 35095 35101 35102 35103 35105 35107 35116 35117 35118
## [3591] 35156 35173 35175 35185 35188 35189 35191 35193 35197 35204
## [3601] 35207 35247 35249 35261 35319 35321 35333 35383 35388 35389
## [3611] 35390 35391 35393 35395 35397 35402 35404 35405 35406 35408
## [3621] 35410 35411 35413 35416 35420 35421 35422 35455 35456 35461
## [3631] 35463 35465 35467 35474 35476 35477 35535 35537 35549 35607
## [3641] 35609 35621 35672 35679 35681 35683 35685 35692 35693 35708
## [3651] 35751 35765 35766 35823 35837 35838 35895 35909 35910 35967
## [3661] 35981 35982 36039 36041 36053 36061 36109 36111 36113 36125
## [3671] 36181 36183 36185 36197 36253 36255 36257 36269 36319 36324
## [3681] 36325 36327 36329 36331 36341 36391 36392 36396 36398 36399
## [3691] 36401 36403 36410 36412 36413 36414 36428 36469 36471 36473
## [3701] 36485 36541 36543 36545 36557 36615 36629 36679 36687 36689
## [3711] 36691 36701 36759 36773 36824 36827 36828 36829 36831 36833
## [3721] 36835 36837 36845 36861 36896 36899 36900 36901 36903 36905
## [3731] 36907 36909 36917 36933 36968 36971 36972 36973 36975 36977
## [3741] 36979 36981 36989 37005 37047 37061 37119 37133 37191 37205
## [3751] 37263 37277 37327 37328 37334 37335 37337 37339 37348 37349
## [3761] 37352 37359 37360 37364 37366 37399 37405 37407 37409 37421
## [3771] 37471 37477 37479 37481 37483 37484 37485 37490 37493 37496
## [3781] 37501 37508 37551 37565 37623 37637 37695 37709 37767 37771
## [3791] 37773 37781 37784 37831 37835 37837 37838 37839 37841 37853
## [3801] 37856 37858 37861 37903 37907 37909 37910 37911 37913 37925
## [3811] 37928 37930 37933 37981 37982 37983 37985 37988 37997 37998
## [3821] 38005 38012 38013 38014 38053 38054 38055 38057 38060 38069
## [3831] 38070 38077 38084 38085 38086 38119 38120 38123 38125 38127
## [3841] 38129 38131 38137 38141 38199 38201 38213 38271 38273 38285
## [3851] 38343 38345 38357 38407 38408 38412 38413 38415 38417 38419
## [3861] 38421 38428 38429 38487 38501 38551 38558 38559 38573 38623
## [3871] 38630 38631 38645 38673 38695 38696 38700 38701 38703 38705
## [3881] 38707 38711 38713 38714 38716 38717 38720 38722 38725 38727
## [3891] 38731 38732 38734 38735 38773 38775 38777 38779 38789 38839
## [3901] 38840 38845 38846 38847 38849 38851 38853 38858 38861 38864
## [3911] 38869 38872 38876 38877 38878 38911 38915 38916 38919 38921
## [3921] 38923 38924 38926 38933 38934 38983 38987 38988 38991 38993
## [3931] 38995 38996 38998 39005 39006 39055 39061 39062 39063 39065
## [3941] 39067 39077 39085 39092 39093 39094 39134 39135 39149 39199
## [3951] 39203 39205 39206 39207 39209 39211 39213 39221 39224 39226
## [3961] 39227 39229 39236 39237 39238 39271 39275 39277 39278 39279
## [3971] 39281 39283 39285 39293 39296 39298 39299 39301 39308 39309
## [3981] 39310 39343 39351 39353 39362 39365 39415 39423 39425 39434
## [3991] 39437 39487 39495 39508 39509 39559 39565 39567 39569 39571
## [4001] 39573 39580 39581 39582 39584 39592 39598 39631 39637 39639
## [4011] 39641 39643 39645 39652 39653 39654 39656 39664 39670 39703
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## [9451] 82864 82909 82911 82913 82917 82922 82925 82928 82981 82983
## [9461] 82985 82989 82994 82997 83000 83053 83055 83057 83061 83066
## [9471] 83069 83072 83127 83140 83141 83147 83156 83157 83158 83199
## [9481] 83212 83213 83219 83228 83229 83230 83271 83284 83285 83291
## [9491] 83300 83301 83302 83305 83306 83311 83316 83318 83321 83328
## [9501] 83334 83341 83342 83343 83345 83347 83354 83356 83357 83377
## [9511] 83378 83383 83388 83390 83393 83400 83406 83413 83414 83415
## [9521] 83417 83419 83426 83428 83429 83485 83487 83488 83489 83491
## [9531] 83492 83501 83505 83507 83509 83511 83514 83516 83519 83551
## [9541] 83552 83557 83558 83559 83561 83572 83573 83623 83624 83629
## [9551] 83630 83631 83633 83644 83645 83695 83696 83701 83702 83703
## [9561] 83705 83716 83717 83767 83773 83774 83775 83777 83782 83788
## [9571] 83789 83806 83845 83847 83849 83861 83869 83911 83912 83916
## [9581] 83918 83919 83921 83932 83933 83983 83984 83987 83989 83991
## [9591] 83993 84005 84055 84056 84059 84061 84063 84065 84071 84074
## [9601] 84077 84127 84128 84131 84133 84135 84137 84143 84146 84149
## [9611] 84199 84200 84203 84205 84207 84209 84215 84218 84221 84276
## [9621] 84277 84278 84279 84284 84285 84293 84348 84349 84350 84351
## [9631] 84356 84357 84365 84415 84421 84423 84425 84427 84429 84437
## [9641] 84445 84452 84453 84454 84488 84492 84493 84494 84495 84497
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## [9661] 84571 84573 84581 84589 84602 84613 84620 84621 84622 84623
## [9671] 84626 84627 84631 84632 84637 84639 84641 84643 84645 84653
## [9681] 84674 84685 84692 84693 84694 84695 84698 84699 84703 84704
## [9691] 84709 84711 84713 84715 84717 84725 84783 84797 84847 84853
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## [9711] 84991 84996 84999 85001 85003 85005 85012 85013 85028 85030
## [9721] 85063 85064 85069 85070 85071 85073 85075 85084 85085 85090
## [9731] 85093 85094 85096 85135 85136 85141 85142 85143 85145 85147
## [9741] 85156 85157 85162 85165 85166 85168 85207 85208 85213 85214
## [9751] 85215 85217 85219 85221 85228 85229 85234 85237 85238 85240
## [9761] 85279 85285 85287 85289 85293 85297 85298 85300 85301 85304
## [9771] 85351 85352 85357 85359 85361 85363 85373 85423 85424 85428
## [9781] 85429 85430 85431 85433 85444 85445 85495 85496 85500 85502
## [9791] 85503 85505 85516 85517 85518 85567 85568 85572 85574 85575
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## [9811] 85660 85661 85662 85711 85719 85732 85733 85783 85789 85791
## [9821] 85793 85795 85805 85855 85856 85861 85862 85863 85865 85867
## [9831] 85877 85880 85885 85892 85893 85927 85932 85933 85935 85945
## [9841] 85946 85947 85949 85950 85952 85958 85966 85999 86004 86005
## [9851] 86007 86017 86018 86019 86021 86022 86024 86030 86038 86072
## [9861] 86075 86078 86079 86083 86084 86093 86144 86147 86150 86151
## [9871] 86155 86156 86165 86216 86219 86222 86223 86227 86228 86237
## [9881] 86288 86293 86295 86309 86360 86365 86367 86381 86431 86437
## [9891] 86438 86439 86441 86449 86450 86452 86453 86503 86509 86510
## [9901] 86511 86513 86521 86522 86524 86525 86581 86583 86585 86587
## [9911] 86597 86600 86653 86655 86657 86659 86669 86672 86725 86727
## [9921] 86729 86731 86741 86744 86797 86799 86801 86813 86871 86885
## [9931] 86943 86957 87015 87029 87087 87101 87151 87157 87158 87159
## [9941] 87161 87165 87170 87173 87178 87183 87184 87185 87186 87188
## [9951] 87189 87190 87223 87229 87231 87233 87235 87245 87295 87296
## [9961] 87300 87301 87303 87305 87307 87309 87316 87317 87367 87368
## [9971] 87372 87373 87375 87377 87379 87381 87388 87389 87447 87461
## [9981] 87519 87533 87591 87595 87605 87663 87667 87677 87727 87728
## [9991] 87731 87734 87735 87737 87748 87749 87807 87821 87879 87893
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## [10011] 88029 88037 88091 88095 88105 88109 88163 88167 88177 88181
## [10021] 88231 88239 88243 88253 88303 88311 88315 88325 88382 88383
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## [10041] 88520 88524 88526 88527 88529 88540 88541 88591 88592 88595
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## [10061] 88741 88742 88743 88745 88747 88749 88757 88760 88785 88790
## [10071] 88798 88799 88801 88806 88808 88813 88815 88817 88825 88827
## [10081] 88829 88839 88840 88857 88862 88870 88871 88873 88878 88880
## [10091] 88885 88887 88889 88897 88899 88901 88911 88912 88929 88934
## [10101] 88942 88943 88945 88950 88952 88957 88959 88961 88969 88973
## [10111] 88983 88984 89001 89006 89014 89015 89017 89022 89024 89029
## [10121] 89031 89033 89041 89045 89055 89056 89073 89078 89086 89087
## [10131] 89089 89094 89096 89101 89103 89105 89113 89117 89127 89128
## [10141] 89145 89150 89158 89159 89161 89166 89168 89173 89175 89177
## [10151] 89185 89189 89199 89200 89217 89222 89230 89231 89233 89238
## [10161] 89240 89245 89247 89249 89257 89259 89261 89271 89272 89289
## [10171] 89294 89302 89303 89305 89310 89312 89317 89319 89321 89329
## [10181] 89333 89343 89344 89361 89366 89374 89375 89377 89382 89384
## [10191] 89389 89391 89393 89401 89405 89415 89416 89432 89455 89463
## [10201] 89477 89528 89532 89533 89535 89537 89549 89600 89604 89605
## [10211] 89607 89609 89621 89672 89676 89677 89679 89681 89693 89743
## [10221] 89744 89747 89749 89751 89753 89765 89823 89837 89895 89909
## [10231] 89967 89981 90031 90035 90037 90038 90039 90041 90043 90045
## [10241] 90050 90052 90053 90056 90059 90069 90071 90103 90107 90109
## [10251] 90110 90111 90113 90115 90117 90122 90124 90125 90128 90131
## [10261] 90141 90143 90175 90179 90181 90182 90183 90185 90187 90189
## [10271] 90194 90196 90197 90200 90203 90213 90215 90248 90255 90257
## [10281] 90259 90269 90272 90285 90327 90329 90338 90341 90399 90401
## [10291] 90410 90413 90463 90471 90477 90482 90484 90485 90488 90496
## [10301] 90498 90502 90535 90543 90549 90554 90556 90557 90560 90568
## [10311] 90574 90615 90629 90687 90701 90759 90773 90831 90845 90903
## [10321] 90917 90974 90975 90977 90989 91039 91040 91045 91047 91049
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## [10341] 91121 91133 91191 91205 91263 91277 91335 91349 91407 91421
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## [10381] 91837 91839 91841 91843 91844 91845 91849 91852 91853 91856
## [10391] 91862 91868 91909 91911 91913 91915 91916 91917 91921 91924
## [10401] 91925 91928 91934 91940 91981 91983 91985 91987 91988 91989
## [10411] 91993 91996 91997 92000 92006 92012 92047 92048 92052 92053
## [10421] 92054 92055 92057 92065 92068 92069 92095 92096 92102 92106
## [10431] 92107 92108 92117 92125 92127 92135 92141 92148 92150 92155
## [10441] 92157 92159 92160 92167 92168 92174 92178 92179 92180 92189
## [10451] 92197 92199 92207 92213 92220 92222 92227 92229 92231 92232
## [10461] 92239 92240 92246 92250 92251 92252 92261 92269 92271 92279
## [10471] 92285 92292 92294 92299 92301 92303 92304 92311 92312 92318
## [10481] 92322 92323 92324 92333 92341 92343 92351 92357 92364 92366
## [10491] 92371 92373 92375 92376 92383 92384 92390 92394 92395 92396
## [10501] 92405 92413 92415 92423 92429 92436 92438 92443 92445 92447
## [10511] 92448 92455 92456 92462 92466 92467 92468 92477 92485 92487
## [10521] 92495 92501 92508 92510 92515 92517 92519 92520 92527 92528
## [10531] 92534 92538 92539 92540 92549 92557 92559 92567 92573 92580
## [10541] 92582 92587 92589 92591 92592 92599 92600 92606 92610 92611
## [10551] 92612 92621 92629 92631 92639 92645 92652 92654 92659 92661
## [10561] 92663 92664 92671 92672 92678 92682 92683 92684 92693 92701
## [10571] 92703 92711 92717 92724 92726 92731 92733 92735 92736 92771
## [10581] 92773 92774 92775 92777 92789 92839 92840 92845 92846 92847
## [10591] 92849 92851 92861 92911 92912 92915 92916 92919 92921 92923
## [10601] 92929 92930 92932 92933 92983 92988 92989 92991 92993 92995
## [10611] 93002 93005 93054 93055 93061 93063 93065 93069 93076 93077
## [10621] 93082 93087 93088 93092 93093 93094 93135 93149 93205 93206
## [10631] 93207 93209 93211 93218 93221 93224 93277 93278 93279 93281
## [10641] 93283 93290 93293 93296 93343 93344 93351 93353 93355 93362
## [10651] 93364 93365 93415 93420 93421 93423 93425 93427 93434 93436
## [10661] 93437 93448 93454 93487 93492 93493 93495 93497 93499 93506
## [10671] 93508 93509 93520 93526 93559 93564 93565 93567 93569 93571
## [10681] 93578 93580 93581 93592 93598 93631 93639 93641 93653 93711
## [10691] 93725 93775 93776 93780 93781 93783 93785 93797 93855 93861
## [10701] 93866 93868 93869 93871 93885 93925 93927 93929 93931 93933
## [10711] 93941 93949 93956 93957 93997 93999 94001 94013 94068 94069
## [10721] 94071 94085 94135 94136 94141 94142 94143 94145 94147 94150
## [10731] 94153 94156 94157 94158 94161 94207 94208 94213 94214 94215
## [10741] 94217 94219 94222 94225 94228 94229 94230 94233 94285 94287
## [10751] 94289 94291 94293 94300 94301 94303 94318 94351 94357 94359
## [10761] 94361 94363 94365 94373 94379 94389 94390 94423 94424 94429
## [10771] 94430 94431 94433 94434 94445 94499 94501 94502 94503 94505
## [10781] 94507 94509 94517 94518 94520 94523 94532 94534 94567 94568
## [10791] 94573 94574 94575 94577 94579 94589 94604 94639 94647 94649
## [10801] 94653 94660 94661 94663 94711 94716 94718 94719 94721 94733
## [10811] 94774 94791 94805 94846 94863 94877 94935 94949 94999 95000
## [10821] 95004 95005 95007 95009 95011 95020 95021 95024 95071 95072
## [10831] 95076 95077 95079 95081 95083 95092 95093 95096 95143 95151
## [10841] 95153 95165 95180 95215 95220 95222 95223 95225 95237 95252
## [10851] 95287 95292 95294 95295 95297 95309 95324 95359 95360 95364
## [10861] 95365 95367 95369 95381 95431 95432 95436 95437 95439 95441
## [10871] 95453 95503 95504 95509 95510 95511 95513 95515 95517 95525
## [10881] 95530 95531 95533 95536 95540 95541 95542 95579 95581 95582
## [10891] 95583 95585 95587 95594 95597 95598 95612 95651 95653 95654
## [10901] 95655 95657 95659 95666 95669 95670 95684 95727 95741 95799
## [10911] 95813 95863 95869 95871 95885 95906 95908 95915 95941 95943
## [10921] 95945 95957 95985 96013 96014 96015 96017 96019 96021 96022
## [10931] 96026 96028 96029 96037 96041 96045 96046 96047 96057 96085
## [10941] 96086 96087 96089 96091 96093 96094 96098 96100 96101 96109
## [10951] 96113 96117 96118 96119 96129 96157 96158 96159 96161 96163
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## [10971] 96201 96229 96230 96231 96233 96235 96237 96238 96242 96244
## [10981] 96245 96253 96257 96261 96262 96263 96301 96303 96317 96354
## [10991] 96379 96380 96381 96389 96392 96395 96396 96397 96398 96403
## [11001] 96407 96444 96447 96449 96457 96461 96519 96530 96532 96533
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## [11021] 96805 96807 96809 96818 96820 96821 96832 96836 96872 96876
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## [11051] 97021 97022 97023 97025 97027 97034 97036 97037 97052 97095
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## [11071] 97245 97250 97253 97270 97303 97304 97309 97311 97313 97321
## [11081] 97324 97325 97336 97340 97381 97383 97385 97387 97389 97397
## [11091] 97453 97455 97457 97466 97468 97469 97519 97520 97525 97526
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## [11201] 98245 98246 98247 98249 98251 98253 98254 98258 98260 98261
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## [11221] 98329 98332 98333 98336 98383 98384 98387 98389 98391 98393
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## [11241] 98463 98465 98467 98469 98473 98476 98477 98480 98527 98533
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## [11271] 98614 98618 98621 98624 98626 98627 98629 98636 98671 98677
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## [11841] 104254 104287 104293 104294 104295 104297 104302 104306 104308 104309
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## [11921] 105080 105084 105086 105087 105089 105091 105100 105101 105151 105152
## [11931] 105156 105158 105159 105161 105163 105172 105173 105229 105231 105233
## [11941] 105245 105295 105296 105301 105303 105305 105317 105374 105375 105380
## [11951] 105388 105389 105439 105447 105449 105451 105454 105460 105461 105464
## [11961] 105468 105478 105511 105519 105521 105523 105526 105532 105533 105536
## [11971] 105540 105550 105604 105612 105615 105616 105618 105622 105624 105661
## [11981] 105663 105677 105733 105735 105749 105769 105773 105775 105796 105805
## [11991] 105806 105807 105809 105821 105841 105845 105847 105868 105877 105878
## [12001] 105879 105881 105893 105951 105965 106015 106016 106020 106021 106022
## [12011] 106023 106025 106030 106033 106036 106037 106039 106046 106095 106109
## [12021] 106167 106181 106239 106253 106303 106304 106309 106310 106311 106313
## [12031] 106322 106324 106325 106383 106397 106448 106453 106454 106455 106457
## [12041] 106459 106460 106461 106466 106469 106472 106477 106485 106519 106520
## [12051] 106523 106525 106527 106529 106531 106538 106541 106544 106591 106592
## [12061] 106595 106597 106599 106601 106603 106610 106613 106616 106663 106664
## [12071] 106667 106669 106671 106673 106675 106682 106685 106688 106740 106741
## [12081] 106742 106743 106745 106753 106754 106756 106757 106760 106761 106763
## [12091] 106766 106767 106772 106774 106775 106776 106812 106813 106814 106815
## [12101] 106817 106825 106826 106828 106829 106832 106833 106835 106838 106839
## [12111] 106844 106846 106847 106848 106887 106889 106897 106901 106916 106957
## [12121] 106959 106961 106973 107011 107023 107031 107045 107101 107103 107105
## [12131] 107107 107117 107173 107175 107177 107179 107189 107245 107247 107249
## [12141] 107251 107261 107319 107333 107391 107405 107463 107467 107469 107477
## [12151] 107483 107484 107485 107493 107535 107539 107541 107549 107555 107556
## [12161] 107557 107565 107607 107621 107679 107693 107744 107747 107749 107751
## [12171] 107753 107755 107765 107815 107819 107821 107823 107825 107827 107828
## [12181] 107834 107837 107840 107887 107891 107893 107895 107897 107899 107900
## [12191] 107906 107909 107912 107959 107963 107965 107967 107969 107971 107972
## [12201] 107978 107981 107984 108032 108035 108037 108038 108039 108041 108043
## [12211] 108045 108053 108111 108115 108125 108175 108181 108182 108183 108193
## [12221] 108197 108247 108253 108254 108255 108269 108319 108327 108341 108391
## [12231] 108399 108413 108436 108443 108449 108451 108453 108454 108459 108461
## [12241] 108465 108471 108485 108508 108515 108521 108523 108525 108526 108531
## [12251] 108533 108537 108543 108557 108580 108587 108593 108595 108597 108598
## [12261] 108603 108605 108609 108615 108629 108652 108659 108665 108667 108669
## [12271] 108670 108675 108677 108681 108687 108701 108724 108731 108737 108739
## [12281] 108741 108742 108747 108749 108753 108759 108773 108796 108803 108809
## [12291] 108811 108813 108814 108819 108821 108825 108831 108845 108868 108875
## [12301] 108881 108883 108885 108886 108891 108893 108897 108903 108917 108940
## [12311] 108947 108953 108955 108957 108958 108963 108965 108969 108975 108989
## [12321] 109047 109049 109053 109061 109119 109133 109191 109205 109255 109256
## [12331] 109260 109261 109263 109265 109267 109269 109270 109276 109277 109278
## [12341] 109280 109284 109288 109296 109327 109328 109332 109333 109335 109337
## [12351] 109339 109341 109342 109348 109349 109350 109352 109356 109360 109368
## [12361] 109399 109400 109404 109405 109407 109409 109411 109413 109414 109420
## [12371] 109421 109422 109424 109428 109432 109440 109471 109472 109476 109477
## [12381] 109479 109481 109483 109485 109486 109492 109493 109494 109496 109500
## [12391] 109504 109512 109549 109551 109565 109621 109623 109629 109637 109659
## [12401] 109680 109687 109688 109691 109693 109695 109697 109699 109705 109708
## [12411] 109709 109712 109717 109724 109732 109733 109739 109742 109750 109751
## [12421] 109755 109759 109760 109763 109765 109767 109769 109781 109839 109850
## [12431] 109852 109853 109911 109925 109975 109976 109979 109981 109983 109985
## [12441] 109987 109994 109996 109997 110047 110048 110051 110053 110055 110057
## [12451] 110059 110066 110068 110069 110127 110136 110137 110144 110145 110148
## [12461] 110150 110154 110160 110199 110208 110209 110216 110217 110220 110222
## [12471] 110226 110232 110271 110280 110281 110288 110289 110292 110294 110298
## [12481] 110304 110343 110352 110353 110360 110361 110364 110366 110370 110376
## [12491] 110415 110424 110425 110432 110433 110436 110438 110442 110448 110485
## [12501] 110486 110487 110489 110491 110493 110497 110498 110499 110501 110504
## [12511] 110509 110516 110551 110552 110556 110557 110559 110561 110563 110570
## [12521] 110572 110573 110593 110594 110598 110599 110600 110601 110604 110606
## [12531] 110611 110612 110613 110616 110622 110623 110627 110629 110630 110631
## [12541] 110633 110636 110637 110642 110643 110645 110648 110649 110650 110651
## [12551] 110653 110656 110657 110660 110661 110666 110670 110671 110672 110673
## [12561] 110676 110678 110683 110684 110685 110688 110694 110695 110699 110701
## [12571] 110702 110703 110705 110708 110709 110714 110715 110717 110720 110721
## [12581] 110722 110723 110725 110728 110729 110732 110733 110738 110742 110743
## [12591] 110744 110745 110748 110750 110755 110756 110757 110760 110766 110767
## [12601] 110771 110773 110774 110775 110777 110780 110781 110786 110787 110789
## [12611] 110792 110793 110794 110795 110797 110800 110801 110804 110805 110810
## [12621] 110814 110815 110816 110817 110820 110822 110827 110828 110829 110832
## [12631] 110838 110839 110843 110845 110846 110847 110849 110852 110853 110858
## [12641] 110859 110861 110864 110865 110866 110867 110869 110872 110873 110876
## [12651] 110877 110882 110886 110887 110888 110889 110892 110894 110899 110900
## [12661] 110901 110904 110910 110911 110915 110917 110918 110919 110921 110924
## [12671] 110925 110930 110931 110933 110936 110937 110938 110939 110941 110944
## [12681] 110945 110948 110949 110954 110958 110959 110960 110961 110964 110966
## [12691] 110971 110972 110973 110976 110982 110983 110987 110989 110990 110991
## [12701] 110993 110996 110997 111002 111003 111005 111008 111009 111010 111011
## [12711] 111013 111016 111017 111020 111021 111026 111030 111031 111032 111033
## [12721] 111036 111038 111043 111044 111045 111048 111054 111055 111059 111061
## [12731] 111062 111063 111065 111068 111069 111074 111075 111077 111080 111081
## [12741] 111082 111083 111085 111088 111089 111092 111093 111098 111102 111103
## [12751] 111104 111105 111108 111110 111115 111116 111117 111120 111126 111127
## [12761] 111131 111133 111134 111135 111137 111140 111141 111146 111147 111149
## [12771] 111152 111153 111154 111155 111157 111160 111161 111164 111165 111176
## [12781] 111205 111206 111207 111209 111211 111213 111218 111221 111229 111248
## [12791] 111277 111278 111279 111281 111283 111285 111290 111293 111301 111339
## [12801] 111351 111365 111415 111416 111421 111422 111423 111425 111427 111433
## [12811] 111434 111436 111437 111454 111487 111488 111493 111494 111495 111497
## [12821] 111499 111505 111506 111508 111509 111526 111564 111565 111567 111580
## [12831] 111581 111636 111637 111639 111652 111653 111708 111709 111711 111724
## [12841] 111725 111781 111783 111785 111789 111796 111797 111803 111808 111812
## [12851] 111847 111853 111855 111869 111919 111925 111927 111941 111997 111999
## [12861] 112003 112013 112070 112071 112085 112142 112143 112157 112207 112208
## [12871] 112213 112215 112217 112229 112279 112280 112285 112287 112289 112301
## [12881] 112351 112352 112357 112359 112361 112373 112429 112430 112431 112433
## [12891] 112435 112437 112445 112501 112502 112503 112505 112507 112509 112517
## [12901] 112567 112575 112589 112639 112645 112646 112647 112649 112651 112660
## [12911] 112661 112672 112711 112715 112717 112718 112719 112721 112723 112730
## [12921] 112732 112733 112791 112805 112860 112861 112863 112865 112867 112868
## [12931] 112869 112877 112927 112933 112934 112935 112937 112941 112945 112949
## [12941] 112952 112955 112956 112957 112960 112964 112999 113005 113006 113007
## [12951] 113009 113013 113017 113021 113024 113027 113028 113029 113032 113036
## [12961] 113071 113077 113078 113079 113081 113083 113084 113085 113090 113092
## [12971] 113093 113098 113101 113108 113109 113110 113151 113153 113165 113223
## [12981] 113225 113237 113295 113297 113309 113359 113364 113367 113369 113377
## [12991] 113378 113381 113406 113439 113453 113472 113478 113511 113525 113544
## [13001] 113550 113583 113597 113616 113622 113655 113669 113688 113694 113727
## [13011] 113741 113760 113766 113799 113813 113832 113863 113868 113871 113885
## [13021] 113943 113957 113972 113973 113982 114015 114029 114044 114045 114087
## [13031] 114101 114151 114156 114157 114158 114159 114161 114163 114165 114166
## [13041] 114170 114172 114173 114223 114228 114229 114230 114231 114233 114235
## [13051] 114237 114238 114242 114244 114245 114295 114296 114301 114302 114303
## [13061] 114305 114307 114309 114314 114316 114317 114325 114327 114328 114330
## [13071] 114332 114334 114371 114373 114374 114375 114377 114379 114381 114389
## [13081] 114392 114397 114443 114445 114446 114447 114449 114451 114453 114461
## [13091] 114464 114469 114515 114517 114518 114519 114521 114523 114525 114533
## [13101] 114536 114541 114583 114591 114593 114604 114661 114663 114676 114677
## [13111] 114694 114733 114735 114748 114749 114766 114807 114821 114844 114850
## [13121] 114855 114871 114872 114873 114879 114881 114883 114893 114903 114948
## [13131] 114950 114951 114965 115020 115022 115023 115037 115092 115094 115095
## [13141] 115109 115159 115160 115165 115166 115167 115169 115171 115180 115181
## [13151] 115196 115231 115232 115237 115238 115239 115241 115243 115252 115253
## [13161] 115268 115303 115304 115309 115310 115311 115313 115315 115324 115325
## [13171] 115340 115375 115379 115380 115381 115383 115385 115387 115394 115396
## [13181] 115397 115398 115402 115405 115412 115447 115451 115452 115453 115455
## [13191] 115457 115459 115466 115468 115469 115470 115474 115477 115484 115519
## [13201] 115520 115525 115526 115527 115529 115532 115533 115540 115541 115549
## [13211] 115551 115552 115554 115556 115557 115558 115591 115596 115597 115599
## [13221] 115601 115603 115612 115613 115663 115664 115669 115670 115671 115673
## [13231] 115682 115684 115685 115735 115736 115741 115742 115743 115745 115754
## [13241] 115756 115757 115813 115814 115815 115817 115819 115820 115829 115885
## [13251] 115887 115901 115957 115959 115973 116023 116029 116031 116033 116035
## [13261] 116045 116095 116101 116103 116105 116107 116117 116167 116168 116171
## [13271] 116172 116173 116175 116177 116185 116188 116189 116245 116247 116249
## [13281] 116261 116311 116315 116317 116319 116329 116332 116333 116336 116342
## [13291] 116383 116387 116389 116391 116401 116404 116405 116408 116414 116455
## [13301] 116461 116462 116463 116465 116477 116527 116531 116532 116533 116535
## [13311] 116537 116539 116548 116549 116605 116607 116621 116677 116679 116693
## [13321] 116743 116748 116749 116750 116751 116753 116755 116765 116815 116820
## [13331] 116821 116822 116823 116825 116827 116837 116895 116909 116959 116964
## [13341] 116965 116966 116967 116969 116974 116978 116980 116981 116986 116988
## [13351] 116989 116996 116997 116998 116999 117031 117039 117041 117053 117109
## [13361] 117111 117125 117175 117181 117183 117185 117187 117196 117197 117212
## [13371] 117213 117214 117247 117253 117255 117257 117265 117269 117323 117325
## [13381] 117326 117327 117329 117331 117333 117341 117344 117357 117399 117413
## [13391] 117471 117485 117543 117557 117607 117613 117614 117615 117617 117619
## [13401] 117621 117626 117629 117632 117634 117635 117637 117644 117645 117646
## [13411] 117687 117701 117751 117756 117757 117758 117759 117761 117763 117765
## [13421] 117770 117773 117776 117781 117823 117828 117829 117830 117831 117833
## [13431] 117835 117837 117842 117845 117848 117853 117895 117901 117903 117905
## [13441] 117907 117910 117916 117917 117924 117934 117967 117968 117972 117973
## [13451] 117975 117977 117979 117988 117989 118047 118051 118061 118111 118116
## [13461] 118117 118119 118121 118123 118132 118133 118183 118184 118187 118189
## [13471] 118191 118205 118255 118256 118259 118261 118263 118277 118327 118328
## [13481] 118331 118333 118335 118349 118405 118407 118409 118411 118421 118437
## [13491] 118471 118479 118490 118493 118543 118551 118562 118565 118623 118637
## [13501] 118695 118709 118759 118764 118765 118767 118769 118771 118780 118781
## [13511] 118789 118796 118837 118839 118841 118852 118853 118897 118902 118905
## [13521] 118913 118924 118925 118933 118969 118977 118985 118996 118997 119005
## [13531] 119047 119052 119053 119055 119059 119068 119069 119119 119124 119125
## [13541] 119127 119131 119140 119141 119197 119199 119201 119203 119206 119213
## [13551] 119271 119277 119285 119288 119343 119349 119357 119360 119415 119421
## [13561] 119429 119432 119487 119493 119501 119504 119559 119565 119573 119576
## [13571] 119624 119628 119630 119631 119633 119635 119636 119644 119645 119701
## [13581] 119707 119717 119735 119767 119768 119771 119772 119775 119777 119779
## [13591] 119789 119847 119849 119860 119861 119911 119919 119921 119932 119933
## [13601] 119983 119991 119993 120004 120005 120059 120061 120062 120063 120065
## [13611] 120067 120077 120080 120135 120149 120204 120205 120207 120209 120211
## [13621] 120221 120276 120277 120279 120281 120283 120293 120343 120344 120349
## [13631] 120351 120353 120355 120364 120365 120415 120416 120421 120423 120425
## [13641] 120427 120436 120437 120476 120479 120487 120493 120494 120495 120532
## [13651] 120541 120542 120545 120555 120559 120565 120566 120567 120569 120571
## [13661] 120578 120581 120584 120631 120636 120637 120638 120639 120641 120643
## [13671] 120645 120650 120653 120709 120711 120725 120728 120781 120783 120797
## [13681] 120800 120855 120868 120869 120927 120940 120941 120968 120991 120997
## [13691] 120999 121013 121069 121070 121071 121073 121082 121084 121085 121141
## [13701] 121143 121157 121213 121215 121229 121278 121280 121285 121287 121289
## [13711] 121291 121292 121298 121300 121301 121312 121316 121350 121352 121357
## [13721] 121359 121361 121363 121364 121370 121372 121373 121384 121388 121428
## [13731] 121429 121431 121435 121445 121462 121495 121496 121500 121501 121503
## [13741] 121505 121507 121509 121516 121517 121532 121534 121567 121572 121573
## [13751] 121575 121577 121581 121589 121604 121639 121644 121645 121647 121649
## [13761] 121653 121661 121676 121711 121716 121717 121719 121721 121723 121725
## [13771] 121733 121749 121791 121805 121855 121860 121861 121862 121863 121865
## [13781] 121867 121869 121877 121885 121892 121927 121932 121933 121934 121935
## [13791] 121937 121939 121941 121949 121957 121964 121999 122000 122005 122007
## [13801] 122009 122011 122020 122021 122036 122077 122079 122083 122093 122149
## [13811] 122150 122151 122165 122221 122223 122225 122236 122237 122293 122295
## [13821] 122297 122308 122309 122335 122336 122347 122359 122363 122364 122365
## [13831] 122366 122367 122369 122380 122381 122382 122439 122441 122444 122449
## [13841] 122453 122503 122507 122509 122510 122511 122513 122517 122525 122583
## [13851] 122597 122655 122669 122720 122725 122727 122729 122731 122741 122792
## [13861] 122797 122799 122801 122803 122813 122863 122871 122873 122875 122885
## [13871] 122935 122942 122943 122945 122947 122954 122956 122957 122958 122963
## [13881] 122964 122968 122970 122972 122974 123007 123012 123014 123015 123019
## [13891] 123021 123024 123026 123028 123029 123033 123037 123040 123044 123045
## [13901] 123046 123087 123101 123159 123173 123231 123245 123295 123300 123302
## [13911] 123303 123305 123316 123317 123334 123367 123372 123374 123375 123377
## [13921] 123388 123389 123406 123447 123461 123511 123512 123517 123518 123519
## [13931] 123521 123523 123525 123526 123532 123533 123548 123583 123584 123589
## [13941] 123590 123591 123593 123595 123597 123598 123604 123605 123620 123645
## [13951] 123660 123663 123664 123665 123667 123669 123677 123686 123687 123691
## [13961] 123717 123732 123735 123736 123737 123739 123741 123749 123758 123759
## [13971] 123763 123807 123809 123821 123879 123881 123893 123951 123965 124015
## [13981] 124019 124021 124022 124023 124025 124027 124030 124033 124034 124036
## [13991] 124037 124054 124087 124091 124094 124095 124100 124109 124160 124165
## [14001] 124167 124169 124181 124231 124237 124239 124241 124252 124253 124303
## [14011] 124309 124311 124313 124324 124325 124375 124376 124379 124381 124383
## [14021] 124385 124396 124397 124447 124455 124457 124468 124469 124486 124520
## [14031] 124524 124525 124527 124530 124541 124542 124592 124596 124597 124599
## [14041] 124602 124613 124614 124664 124668 124669 124671 124674 124685 124686
## [14051] 124741 124743 124745 124757 124813 124815 124817 124829 124879 124885
## [14061] 124887 124889 124891 124901 124957 124958 124959 124961 124963 124965
## [14071] 124966 124972 124973 125031 125045 125103 125116 125117 125168 125171
## [14081] 125173 125175 125177 125179 125184 125189 125204 125240 125243 125245
## [14091] 125247 125249 125251 125256 125261 125276 125312 125318 125319 125321
## [14101] 125325 125333 125384 125390 125391 125393 125397 125405 125461 125463
## [14111] 125467 125477 125527 125528 125533 125535 125545 125546 125548 125549
## [14121] 125550 125564 125599 125604 125607 125609 125620 125621 125671 125676
## [14131] 125679 125681 125692 125693 125743 125747 125749 125750 125751 125753
## [14141] 125755 125757 125762 125764 125765 125771 125780 125815 125819 125821
## [14151] 125822 125823 125825 125827 125829 125834 125836 125837 125843 125852
## [14161] 125887 125893 125895 125897 125906 125908 125909 125910 125925 125965
## [14171] 125967 125981 126037 126039 126041 126043 126046 126050 126053 126056
## [14181] 126104 126111 126125 126180 126181 126182 126183 126185 126197 126247
## [14191] 126248 126253 126255 126257 126262 126266 126268 126269 126270 126280
## [14201] 126284 126286 126319 126320 126325 126327 126329 126334 126338 126340
## [14211] 126341 126342 126352 126356 126358 126364 126365 126391 126397 126399
## [14221] 126401 126413 126416 126436 126437 126463 126469 126471 126473 126485
## [14231] 126488 126508 126509 126535 126541 126543 126545 126557 126560 126607
## [14241] 126615 126617 126629 126679 126680 126685 126686 126687 126689 126691
## [14251] 126693 126698 126700 126701 126704 126709 126716 126717 126718 126751
## [14261] 126752 126755 126757 126759 126761 126765 126770 126772 126773 126774
## [14271] 126790 126824 126827 126828 126829 126831 126833 126845 126901 126903
## [14281] 126917 126967 126968 126971 126973 126974 126975 126979 126989 127039
## [14291] 127040 127043 127045 127046 127047 127051 127061 127111 127112 127115
## [14301] 127117 127118 127119 127123 127133 127158 127161 127163 127167 127177
## [14311] 127186 127188 127189 127191 127193 127197 127205 127230 127233 127235
## [14321] 127239 127249 127258 127260 127261 127263 127265 127269 127277 127327
## [14331] 127333 127335 127337 127342 127345 127348 127349 127364 127399 127405
## [14341] 127407 127409 127414 127417 127420 127421 127436 127479 127493 127543
## [14351] 127551 127565 127587 127590 127591 127596 127604 127605 127618 127619
## [14361] 127621 127622 127623 127624 127630 127636 127637 127652 127653 127654
## [14371] 127687 127692 127693 127694 127695 127697 127705 127706 127708 127709
## [14381] 127724 127759 127764 127765 127766 127767 127769 127777 127778 127780
## [14391] 127781 127796 127837 127838 127839 127841 127843 127845 127853 127856
## [14401] 127861 127911 127925 127983 127997 128052 128053 128054 128055 128057
## [14411] 128059 128060 128069 128124 128125 128126 128127 128129 128131 128132
## [14421] 128141 128196 128197 128198 128199 128201 128203 128204 128213 128263
## [14431] 128267 128269 128270 128271 128273 128282 128284 128285 128288 128335
## [14441] 128339 128341 128342 128343 128345 128354 128356 128357 128360 128407
## [14451] 128411 128413 128414 128415 128417 128426 128428 128429 128432 128487
## [14461] 128501 128551 128552 128555 128556 128559 128563 128573 128623 128624
## [14471] 128627 128628 128631 128635 128645 128695 128703 128705 128717 128767
## [14481] 128771 128774 128775 128777 128789 128839 128844 128845 128847 128849
## [14491] 128852 128861 128876 128877 128911 128912 128917 128919 128921 128923
## [14501] 128925 128932 128933 128948 128983 128989 128990 128991 128993 128995
## [14511] 128997 128998 129002 129005 129008 129020 129049 129063 129077 129121
## [14521] 129135 129149 129193 129207 129221 129265 129279 129293 129337 129351
## [14531] 129365 129409 129423 129437 129481 129495 129509 129559 129560 129565
## [14541] 129566 129567 129569 129571 129573 129578 129581 129596 129631 129632
## [14551] 129637 129638 129639 129641 129643 129645 129650 129653 129668 129703
## [14561] 129709 129711 129713 129715 129716 129717 129722 129725 129733 129740
## [14571] 129775 129781 129783 129785 129787 129788 129789 129794 129797 129805
## [14581] 129812 129847 129853 129855 129857 129859 129860 129861 129866 129869
## [14591] 129877 129884 129919 129925 129927 129929 129931 129932 129933 129938
## [14601] 129941 129949 129956 129997 129999 130001 130005 130013 130071 130085
## [14611] 130143 130157 130215 130229 130285 130287 130301 130351 130359 130361
## [14621] 130373 130423 130431 130433 130445 130495 130503 130505 130517 130571
## [14631] 130573 130575 130579 130589 130643 130645 130647 130651 130661 130711
## [14641] 130719 130721 130723 130733 130783 130788 130790 130791 130793 130805
## [14651] 130855 130860 130862 130863 130865 130877 130927 130933 130934 130935
## [14661] 130937 130939 130941 130945 130946 130948 130949 130955 130960 130964
## [14671] 130966 130999 131005 131006 131007 131009 131011 131013 131017 131018
## [14681] 131020 131021 131027 131032 131036 131038 131053 131059 131061 131063
## [14691] 131073 131075 131077 131078 131079 131083 131086 131092 131093 131096
## [14701] 131107 131108 131125 131131 131133 131135 131145 131147 131149 131150
## [14711] 131151 131155 131158 131164 131165 131168 131179 131180 131197 131203
## [14721] 131205 131207 131217 131219 131221 131222 131223 131227 131230 131236
## [14731] 131237 131240 131251 131252 131269 131275 131277 131279 131289 131291
## [14741] 131293 131294 131295 131299 131302 131308 131309 131312 131323 131324
## [14751] 131341 131347 131349 131351 131361 131363 131365 131366 131367 131371
## [14761] 131374 131380 131381 131384 131395 131396 131413 131419 131421 131423
## [14771] 131433 131435 131437 131438 131439 131443 131446 131452 131453 131456
## [14781] 131467 131468 131485 131491 131493 131495 131505 131507 131509 131510
## [14791] 131511 131515 131518 131524 131525 131528 131539 131540 131557 131563
## [14801] 131565 131567 131577 131579 131581 131582 131583 131587 131590 131596
## [14811] 131597 131600 131611 131612 131629 131635 131637 131639 131649 131651
## [14821] 131653 131654 131655 131659 131662 131668 131669 131672 131683 131684
## [14831] 131701 131707 131709 131711 131721 131723 131725 131726 131727 131731
## [14841] 131734 131740 131741 131744 131755 131756 131773 131779 131781 131783
## [14851] 131793 131795 131797 131798 131799 131803 131806 131812 131813 131816
## [14861] 131827 131828 131845 131851 131853 131855 131865 131867 131869 131870
## [14871] 131871 131875 131878 131879 131884 131885 131888 131899 131900 131935
## [14881] 131941 131943 131945 131957 132013 132014 132015 132029 132085 132087
## [14891] 132101 132157 132159 132173 132229 132231 132245 132303 132317 132375
## [14901] 132389 132439 132440 132444 132445 132446 132447 132449 132458 132461
## [14911] 132476 132478 132511 132512 132516 132517 132518 132519 132521 132530
## [14921] 132533 132548 132550 132583 132588 132589 132591 132593 132595 132596
## [14931] 132602 132604 132605 132606 132655 132656 132663 132669 132677 132692
## [14941] 132727 132728 132735 132741 132749 132764 132785 132807 132821 132857
## [14951] 132879 132893 132929 132951 132965 133023 133037 133095 133109 133110
## [14961] 133112 133113 133126 133165 133166 133167 133169 133171 133181 133231
## [14971] 133232 133237 133239 133241 133243 133250 133253 133303 133307 133309
## [14981] 133310 133311 133313 133315 133317 133322 133325 133383 133397 133447
## [14991] 133455 133459 133469 133525 133526 133527 133529 133531 133533 133534
## [15001] 133538 133540 133541 133548 133549 133555 133558 133559 133590 133595
## [15011] 133597 133599 133613 133662 133667 133669 133671 133685 133735 133736
## [15021] 133741 133742 133743 133745 133747 133753 133754 133756 133757 133758
## [15031] 133768 133807 133808 133813 133814 133815 133817 133819 133825 133826
## [15041] 133828 133829 133830 133840 133879 133880 133885 133886 133887 133889
## [15051] 133891 133897 133898 133900 133901 133902 133912 133951 133952 133957
## [15061] 133958 133959 133961 133963 133969 133970 133972 133973 133974 133984
## [15071] 134023 134024 134029 134030 134031 134033 134035 134041 134042 134044
## [15081] 134045 134046 134056 134095 134096 134101 134102 134103 134105 134107
## [15091] 134113 134114 134116 134117 134118 134128 134167 134168 134173 134174
## [15101] 134175 134177 134179 134185 134186 134188 134189 134190 134200 134228
## [15111] 134239 134245 134246 134247 134249 134251 134253 134260 134261 134266
## [15121] 134268 134278 134319 134325 134332 134333 134391 134405 134410 134412
## [15131] 134413 134420 134463 134477 134482 134485 134492 134535 134549 134554
## [15141] 134557 134564 134605 134606 134607 134609 134613 134618 134620 134621
## [15151] 134629 134677 134678 134679 134681 134685 134690 134692 134693 134701
## [15161] 134749 134750 134751 134753 134757 134762 134764 134765 134773 134821
## [15171] 134822 134823 134825 134829 134833 134834 134836 134837 134845 134869
## [15181] 134870 134873 134893 134894 134895 134897 134899 134909 134941 134942
## [15191] 134945 134965 134966 134967 134969 134971 134981 135039 135053 135103
## [15201] 135104 135109 135111 135113 135122 135124 135125 135133 135183 135197
## [15211] 135247 135248 135251 135253 135254 135255 135257 135266 135268 135269
## [15221] 135319 135320 135325 135327 135338 135341 135391 135392 135397 135399
## [15231] 135410 135413 135471 135485 135543 135557 135607 135608 135613 135614
## [15241] 135615 135617 135619 135621 135625 135626 135628 135629 135630 135685
## [15251] 135687 135691 135693 135697 135701 135709 135714 135716 135757 135759
## [15261] 135763 135765 135769 135773 135781 135786 135788 135829 135831 135835
## [15271] 135837 135841 135845 135853 135858 135860 135895 135896 135899 135901
## [15281] 135903 135905 135914 135916 135917 135918 135921 135923 135925 135932
## [15291] 135933 135967 135968 135971 135973 135975 135977 135986 135988 135989
## [15301] 135990 135993 135995 135997 136004 136005 136039 136045 136046 136047
## [15311] 136049 136051 136056 136060 136061 136062 136064 136071 136072 136074
## [15321] 136076 136117 136119 136121 136123 136126 136129 136132 136133 136183
## [15331] 136189 136191 136193 136202 136205 136255 136261 136263 136265 136274
## [15341] 136277 136327 136335 136339 136341 136349 136352 136399 136407 136411
## [15351] 136413 136421 136424 136471 136479 136483 136485 136493 136496 136547
## [15361] 136549 136550 136551 136553 136555 136557 136562 136565 136568 136573
## [15371] 136583 136596 136617 136623 136624 136625 136668 136689 136695 136697
## [15381] 136740 136761 136767 136769 136801 136804 136813 136820 136829 136830
## [15391] 136832 136837 136838 136839 136841 136843 136845 136849 136852 136853
## [15401] 136873 136876 136885 136892 136901 136902 136904 136909 136910 136911
## [15411] 136913 136915 136917 136921 136924 136925 136983 136985 136987 136994
## [15421] 136997 137000 137005 137006 137012 137055 137057 137069 137119 137125
## [15431] 137127 137129 137131 137141 137179 137181 137195 137197 137198 137199
## [15441] 137201 137203 137204 137205 137210 137213 137216 137221 137228 137263
## [15451] 137267 137269 137271 137275 137284 137285 137335 137336 137340 137341
## [15461] 137342 137343 137345 137350 137354 137356 137357 137379 137385 137388
## [15471] 137389 137390 137392 137394 137395 137396 137397 137406 137407 137411
## [15481] 137412 137413 137415 137420 137421 137428 137429 137430 137451 137453
## [15491] 137455 137464 137474 137476 137477 137487 137489 137501 137513 137523
## [15501] 137525 137527 137536 137546 137548 137549 137559 137561 137573 137585
## [15511] 137595 137597 137599 137608 137618 137620 137621 137631 137633 137645
## [15521] 137657 137667 137669 137671 137680 137690 137692 137693 137703 137705
## [15531] 137717 137729 137744 137745 137751 137752 137756 137764 137766 137771
## [15541] 137772 137774 137775 137777 137779 137780 137789 137790 137824 137837
## [15551] 137839 137843 137846 137847 137849 137851 137852 137861 137863 137896
## [15561] 137909 137911 137915 137918 137919 137921 137923 137924 137933 137935
## [15571] 137968 137981 137983 137987 137990 137991 137993 137995 137996 138005
## [15581] 138007 138040 138053 138055 138059 138062 138063 138065 138067 138068
## [15591] 138077 138079 138098 138107 138110 138112 138115 138122 138133 138135
## [15601] 138137 138149 138158 138170 138179 138182 138184 138187 138194 138205
## [15611] 138207 138209 138221 138230 138242 138251 138254 138256 138259 138266
## [15621] 138277 138279 138281 138293 138302 138315 138317 138318 138320 138321
## [15631] 138322 138328 138331 138332 138334 138337 138341 138343 138346 138350
## [15641] 138351 138352 138353 138355 138359 138363 138372 138375 138378 138379
## [15651] 138381 138384 138387 138389 138390 138392 138393 138394 138400 138403
## [15661] 138404 138406 138409 138413 138415 138418 138422 138423 138424 138425
## [15671] 138427 138430 138431 138435 138444 138447 138450 138451 138453 138456
## [15681] 138458 138459 138460 138466 138470 138472 138481 138482 138487 138488
## [15691] 138492 138493 138495 138497 138499 138501 138509 138510 138529 138531
## [15701] 138534 138537 138543 138544 138546 138550 138551 138553 138554 138556
## [15711] 138560 138561 138565 138567 138568 138570 138577 138580 138581 138582
## [15721] 138583 138588 138591 138592 138594 138596 138598 138601 138603 138606
## [15731] 138609 138615 138616 138618 138622 138623 138625 138626 138628 138632
## [15741] 138633 138637 138639 138640 138642 138649 138652 138653 138654 138655
## [15751] 138660 138663 138664 138666 138668 138670 138673 138675 138678 138681
## [15761] 138687 138688 138690 138694 138695 138697 138698 138700 138704 138705
## [15771] 138709 138711 138712 138714 138721 138724 138725 138726 138727 138732
## [15781] 138735 138736 138738 138740 138742 138745 138747 138750 138753 138759
## [15791] 138760 138762 138766 138767 138769 138770 138772 138776 138777 138781
## [15801] 138783 138784 138786 138793 138796 138797 138798 138799 138804 138807
## [15811] 138808 138810 138812 138814 138817 138819 138822 138825 138831 138832
## [15821] 138834 138838 138839 138841 138842 138844 138848 138849 138853 138855
## [15831] 138856 138858 138865 138868 138869 138870 138871 138876 138879 138880
## [15841] 138882 138884 138886bird_snps_num_df[1,] # TODO## X1 X2 X3 X4 X5 X6 X7 X8 X9 X10 X11 X12 X13 X14 X15 X16 X17
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## X18 X19 X20 X21 X22 X23 X24 X25 X26 X27 X28 X29 X30 X31 X32
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
## X33 X34 X35 X36 X37 X38 X39 X40 X41 X42 X43 X44 X45 X46 X47
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## X48 X49 X50 X51 X52 X53 X54 X55 X56 X57 X58 X59 X60 X61 X62
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## X63 X64 X65 X66 X67 X68 X69 X70 X71 X72 X73 X74 X75 X76 X77
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0
## X78 X79 X80 X81 X82 X83 X84 X85 X86 X87 X88 X89 X90 X91 X92
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## X93 X94 X95 X96 X97 X98 X99 X100 X101 X102 X103 X104 X105
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0 0
## X106 X107 X108 X109 X110 X111 X112 X113 X114 X115 X116 X117
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X118 X119 X120 X121 X122 X123 X124 X125 X126 X127 X128 X129
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X130 X131 X132 X133 X134 X135 X136 X137 X138 X139 X140 X141
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X142 X143 X144 X145 X146 X147 X148 X149 X150 X151 X152 X153
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X154 X155 X156 X157 X158 X159 X160 X161 X162 X163 X164 X165
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0 0 0
## X166 X167 X168 X169 X170 X171 X172 X173 X174 X175 X176 X177
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0 0 0
## X178 X179 X180 X181 X182 X183 X184 X185 X186 X187 X188 X189
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 1 0
## X190 X191 X192 X193 X194 X195 X196 X197 X198 X199 X200 X201
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X202 X203 X204 X205 X206 X207 X208 X209 X210 X211 X212 X213
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0 1 0
## X214 X215 X216 X217 X218 X219 X220 X221 X222 X223 X224 X225
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0 0 1
## X226 X227 X228 X229 X230 X231 X232 X233 X234 X235 X236 X237
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X238 X239 X240 X241 X242 X243 X244 X245 X246 X247 X248 X249
## sample_ACAAA_Nel3 0 0 1 1 1 1 0 0 1 0 0 1
## X250 X251 X252 X253 X254 X255 X256 X257 X258 X259 X260 X261
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 0 0 0
## X262 X263 X264 X265 X266 X267 X268 X269 X270 X271 X272 X273
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X274 X275 X276 X277 X278 X279 X280 X281 X282 X283 X284 X285
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0 0 0
## X286 X287 X288 X289 X290 X291 X292 X293 X294 X295 X296 X297
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0 0 0 0 0
## X298 X299 X300 X301 X302 X303 X304 X305 X306 X307 X308 X309
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X310 X311 X312 X313 X314 X315 X316 X317 X318 X319 X320 X321
## sample_ACAAA_Nel3 0 0 1 0 0 0 1 0 0 0 0 0
## X322 X323 X324 X325 X326 X327 X328 X329 X330 X331 X332 X333
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X334 X335 X336 X337 X338 X339 X340 X341 X342 X343 X344 X345
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 1
## X346 X347 X348 X349 X350 X351 X352 X353 X354 X355 X356 X357
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X358 X359 X360 X361 X362 X363 X364 X365 X366 X367 X368 X369
## sample_ACAAA_Nel3 1 0 1 0 0 0 0 0 1 0 0 1
## X370 X371 X372 X373 X374 X375 X376 X377 X378 X379 X380 X381
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 1 0 0 0 0
## X382 X383 X384 X385 X386 X387 X388 X389 X390 X391 X392 X393
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 1 1 0
## X394 X395 X396 X397 X398 X399 X400 X401 X402 X403 X404 X405
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X406 X407 X408 X409 X410 X411 X412 X413 X414 X415 X416 X417
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X418 X419 X420 X421 X422 X423 X424 X425 X426 X427 X428 X429
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0 0 0
## X430 X431 X432 X433 X434 X435 X436 X437 X438 X439 X440 X441
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0 0 0
## X442 X443 X444 X445 X446 X447 X448 X449 X450 X451 X452 X453
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0 0 0
## X454 X455 X456 X457 X458 X459 X460 X461 X462 X463 X464 X465
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X466 X467 X468 X469 X470 X471 X472 X473 X474 X475 X476 X477
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0 0 0
## X478 X479 X480 X481 X482 X483 X484 X485 X486 X487 X488 X489
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X490 X491 X492 X493 X494 X495 X496 X497 X498 X499 X500 X501
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X502 X503 X504 X505 X506 X507 X508 X509 X510 X511 X512 X513
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X514 X515 X516 X517 X518 X519 X520 X521 X522 X523 X524 X525
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X526 X527 X528 X529 X530 X531 X532 X533 X534 X535 X536 X537
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0 0 0
## X538 X539 X540 X541 X542 X543 X544 X545 X546 X547 X548 X549
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 1 0 0 0
## X550 X551 X552 X553 X554 X555 X556 X557 X558 X559 X560 X561
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X562 X563 X564 X565 X566 X567 X568 X569 X570 X571 X572 X573
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X574 X575 X576 X577 X578 X579 X580 X581 X582 X583 X584 X585
## sample_ACAAA_Nel3 0 0 1 1 0 0 0 0 0 0 0 0
## X586 X587 X588 X589 X590 X591 X592 X593 X594 X595 X596 X597
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0 1 1 0 0
## X598 X599 X600 X601 X602 X603 X604 X605 X606 X607 X608 X609
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0 0 0
## X610 X611 X612 X613 X614 X615 X616 X617 X618 X619 X620 X621
## sample_ACAAA_Nel3 0 0 0 0 1 0 1 0 0 0 0 0
## X622 X623 X624 X625 X626 X627 X628 X629 X630 X631 X632 X633
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 1 0
## X634 X635 X636 X637 X638 X639 X640 X641 X642 X643 X644 X645
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 1 1 0 0 0
## X646 X647 X648 X649 X650 X651 X652 X653 X654 X655 X656 X657
## sample_ACAAA_Nel3 1 1 0 0 0 1 0 0 0 0 0 0
## X658 X659 X660 X661 X662 X663 X664 X665 X666 X667 X668 X669
## sample_ACAAA_Nel3 0 0 0 0 0 0 NA NA NA NA NA NA
## X670 X671 X672 X673 X674 X675 X676 X677 X678 X679 X680 X681
## sample_ACAAA_Nel3 1 0 1 1 0 0 0 0 0 0 0 0
## X682 X683 X684 X685 X686 X687 X688 X689 X690 X691 X692 X693
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 1 0 NA
## X694 X695 X696 X697 X698 X699 X700 X701 X702 X703 X704 X705
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X706 X707 X708 X709 X710 X711 X712 X713 X714 X715 X716 X717
## sample_ACAAA_Nel3 1 1 0 0 0 0 1 1 0 0 0 0
## X718 X719 X720 X721 X722 X723 X724 X725 X726 X727 X728 X729
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X730 X731 X732 X733 X734 X735 X736 X737 X738 X739 X740 X741
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X742 X743 X744 X745 X746 X747 X748 X749 X750 X751 X752 X753
## sample_ACAAA_Nel3 1 0 NA 0 0 0 1 0 1 0 0 0
## X754 X755 X756 X757 X758 X759 X760 X761 X762 X763 X764 X765
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X766 X767 X768 X769 X770 X771 X772 X773 X774 X775 X776 X777
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 1
## X778 X779 X780 X781 X782 X783 X784 X785 X786 X787 X788 X789
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 0 0 0
## X790 X791 X792 X793 X794 X795 X796 X797 X798 X799 X800 X801
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X802 X803 X804 X805 X806 X807 X808 X809 X810 X811 X812 X813
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X814 X815 X816 X817 X818 X819 X820 X821 X822 X823 X824 X825
## sample_ACAAA_Nel3 0 0 1 1 0 0 0 0 0 0 0 0
## X826 X827 X828 X829 X830 X831 X832 X833 X834 X835 X836 X837
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 1 0 0 0
## X838 X839 X840 X841 X842 X843 X844 X845 X846 X847 X848 X849
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0 0 0
## X850 X851 X852 X853 X854 X855 X856 X857 X858 X859 X860 X861
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X862 X863 X864 X865 X866 X867 X868 X869 X870 X871 X872 X873
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X874 X875 X876 X877 X878 X879 X880 X881 X882 X883 X884 X885
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 1 0 0
## X886 X887 X888 X889 X890 X891 X892 X893 X894 X895 X896 X897
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X898 X899 X900 X901 X902 X903 X904 X905 X906 X907 X908 X909
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0 0 0 0 0
## X910 X911 X912 X913 X914 X915 X916 X917 X918 X919 X920 X921
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 1 0 0 0
## X922 X923 X924 X925 X926 X927 X928 X929 X930 X931 X932 X933
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0 0 0
## X934 X935 X936 X937 X938 X939 X940 X941 X942 X943 X944 X945
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X946 X947 X948 X949 X950 X951 X952 X953 X954 X955 X956 X957
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X958 X959 X960 X961 X962 X963 X964 X965 X966 X967 X968 X969
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0 0
## X970 X971 X972 X973 X974 X975 X976 X977 X978 X979 X980 X981
## sample_ACAAA_Nel3 0 0 0 1 0 1 0 0 1 0 0 0
## X982 X983 X984 X985 X986 X987 X988 X989 X990 X991 X992 X993
## sample_ACAAA_Nel3 1 NA NA NA NA NA NA NA NA 0 0 0
## X994 X995 X996 X997 X998 X999 X1000 X1001 X1002 X1003 X1004
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0 0
## X1005 X1006 X1007 X1008 X1009 X1010 X1011 X1012 X1013 X1014
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 0
## X1015 X1016 X1017 X1018 X1019 X1020 X1021 X1022 X1023 X1024
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1025 X1026 X1027 X1028 X1029 X1030 X1031 X1032 X1033 X1034
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1035 X1036 X1037 X1038 X1039 X1040 X1041 X1042 X1043 X1044
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0
## X1045 X1046 X1047 X1048 X1049 X1050 X1051 X1052 X1053 X1054
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 1 0
## X1055 X1056 X1057 X1058 X1059 X1060 X1061 X1062 X1063 X1064
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 1
## X1065 X1066 X1067 X1068 X1069 X1070 X1071 X1072 X1073 X1074
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1075 X1076 X1077 X1078 X1079 X1080 X1081 X1082 X1083 X1084
## sample_ACAAA_Nel3 0 0 0 0 1 1 0 0 0 0
## X1085 X1086 X1087 X1088 X1089 X1090 X1091 X1092 X1093 X1094
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0
## X1095 X1096 X1097 X1098 X1099 X1100 X1101 X1102 X1103 X1104
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0
## X1105 X1106 X1107 X1108 X1109 X1110 X1111 X1112 X1113 X1114
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1115 X1116 X1117 X1118 X1119 X1120 X1121 X1122 X1123 X1124
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1125 X1126 X1127 X1128 X1129 X1130 X1131 X1132 X1133 X1134
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0 1 1
## X1135 X1136 X1137 X1138 X1139 X1140 X1141 X1142 X1143 X1144
## sample_ACAAA_Nel3 1 1 1 0 0 0 0 0 1 0
## X1145 X1146 X1147 X1148 X1149 X1150 X1151 X1152 X1153 X1154
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0
## X1155 X1156 X1157 X1158 X1159 X1160 X1161 X1162 X1163 X1164
## sample_ACAAA_Nel3 0 0 0 NA NA 0 0 0 0 0
## X1165 X1166 X1167 X1168 X1169 X1170 X1171 X1172 X1173 X1174
## sample_ACAAA_Nel3 0 0 0 1 1 0 0 0 1 0
## X1175 X1176 X1177 X1178 X1179 X1180 X1181 X1182 X1183 X1184
## sample_ACAAA_Nel3 1 1 0 0 0 0 0 0 0 0
## X1185 X1186 X1187 X1188 X1189 X1190 X1191 X1192 X1193 X1194
## sample_ACAAA_Nel3 0 0 1 0 0 1 0 0 0 0
## X1195 X1196 X1197 X1198 X1199 X1200 X1201 X1202 X1203 X1204
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1205 X1206 X1207 X1208 X1209 X1210 X1211 X1212 X1213 X1214
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0
## X1215 X1216 X1217 X1218 X1219 X1220 X1221 X1222 X1223 X1224
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1225 X1226 X1227 X1228 X1229 X1230 X1231 X1232 X1233 X1234
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1235 X1236 X1237 X1238 X1239 X1240 X1241 X1242 X1243 X1244
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1245 X1246 X1247 X1248 X1249 X1250 X1251 X1252 X1253 X1254
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1255 X1256 X1257 X1258 X1259 X1260 X1261 X1262 X1263 X1264
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0
## X1265 X1266 X1267 X1268 X1269 X1270 X1271 X1272 X1273 X1274
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0
## X1275 X1276 X1277 X1278 X1279 X1280 X1281 X1282 X1283 X1284
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1285 X1286 X1287 X1288 X1289 X1290 X1291 X1292 X1293 X1294
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1295 X1296 X1297 X1298 X1299 X1300 X1301 X1302 X1303 X1304
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0 0 0
## X1305 X1306 X1307 X1308 X1309 X1310 X1311 X1312 X1313 X1314
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1315 X1316 X1317 X1318 X1319 X1320 X1321 X1322 X1323 X1324
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0 0 0
## X1325 X1326 X1327 X1328 X1329 X1330 X1331 X1332 X1333 X1334
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 1
## X1335 X1336 X1337 X1338 X1339 X1340 X1341 X1342 X1343 X1344
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0
## X1345 X1346 X1347 X1348 X1349 X1350 X1351 X1352 X1353 X1354
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1355 X1356 X1357 X1358 X1359 X1360 X1361 X1362 X1363 X1364
## sample_ACAAA_Nel3 1 0 0 0 1 0 0 0 0 0
## X1365 X1366 X1367 X1368 X1369 X1370 X1371 X1372 X1373 X1374
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0
## X1375 X1376 X1377 X1378 X1379 X1380 X1381 X1382 X1383 X1384
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1385 X1386 X1387 X1388 X1389 X1390 X1391 X1392 X1393 X1394
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1395 X1396 X1397 X1398 X1399 X1400 X1401 X1402 X1403 X1404
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1405 X1406 X1407 X1408 X1409 X1410 X1411 X1412 X1413 X1414
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
## X1415 X1416 X1417 X1418 X1419 X1420 X1421 X1422 X1423 X1424
## sample_ACAAA_Nel3 1 0 1 0 0 0 0 1 0 1
## X1425 X1426 X1427 X1428 X1429 X1430 X1431 X1432 X1433 X1434
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1435 X1436 X1437 X1438 X1439 X1440 X1441 X1442 X1443 X1444
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 1 0
## X1445 X1446 X1447 X1448 X1449 X1450 X1451 X1452 X1453 X1454
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
## X1455 X1456 X1457 X1458 X1459 X1460 X1461 X1462 X1463 X1464
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1465 X1466 X1467 X1468 X1469 X1470 X1471 X1472 X1473 X1474
## sample_ACAAA_Nel3 0 0 0 0 0 NA NA 0 0 0
## X1475 X1476 X1477 X1478 X1479 X1480 X1481 X1482 X1483 X1484
## sample_ACAAA_Nel3 0 0 0 1 1 0 0 0 0 0
## X1485 X1486 X1487 X1488 X1489 X1490 X1491 X1492 X1493 X1494
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1495 X1496 X1497 X1498 X1499 X1500 X1501 X1502 X1503 X1504
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 1 0 0
## X1505 X1506 X1507 X1508 X1509 X1510 X1511 X1512 X1513 X1514
## sample_ACAAA_Nel3 0 0 0 0 0 1 1 1 1 0
## X1515 X1516 X1517 X1518 X1519 X1520 X1521 X1522 X1523 X1524
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1525 X1526 X1527 X1528 X1529 X1530 X1531 X1532 X1533 X1534
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0
## X1535 X1536 X1537 X1538 X1539 X1540 X1541 X1542 X1543 X1544
## sample_ACAAA_Nel3 0 0 NA 0 0 0 0 0 0 0
## X1545 X1546 X1547 X1548 X1549 X1550 X1551 X1552 X1553 X1554
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1555 X1556 X1557 X1558 X1559 X1560 X1561 X1562 X1563 X1564
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1565 X1566 X1567 X1568 X1569 X1570 X1571 X1572 X1573 X1574
## sample_ACAAA_Nel3 0 1 0 0 0 0 1 0 0 0
## X1575 X1576 X1577 X1578 X1579 X1580 X1581 X1582 X1583 X1584
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1585 X1586 X1587 X1588 X1589 X1590 X1591 X1592 X1593 X1594
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
## X1595 X1596 X1597 X1598 X1599 X1600 X1601 X1602 X1603 X1604
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1605 X1606 X1607 X1608 X1609 X1610 X1611 X1612 X1613 X1614
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1615 X1616 X1617 X1618 X1619 X1620 X1621 X1622 X1623 X1624
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0
## X1625 X1626 X1627 X1628 X1629 X1630 X1631 X1632 X1633 X1634
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1635 X1636 X1637 X1638 X1639 X1640 X1641 X1642 X1643 X1644
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1645 X1646 X1647 X1648 X1649 X1650 X1651 X1652 X1653 X1654
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
## X1655 X1656 X1657 X1658 X1659 X1660 X1661 X1662 X1663 X1664
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0
## X1665 X1666 X1667 X1668 X1669 X1670 X1671 X1672 X1673 X1674
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1675 X1676 X1677 X1678 X1679 X1680 X1681 X1682 X1683 X1684
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 0
## X1685 X1686 X1687 X1688 X1689 X1690 X1691 X1692 X1693 X1694
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 0 0
## X1695 X1696 X1697 X1698 X1699 X1700 X1701 X1702 X1703 X1704
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1705 X1706 X1707 X1708 X1709 X1710 X1711 X1712 X1713 X1714
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1715 X1716 X1717 X1718 X1719 X1720 X1721 X1722 X1723 X1724
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1725 X1726 X1727 X1728 X1729 X1730 X1731 X1732 X1733 X1734
## sample_ACAAA_Nel3 0 1 1 0 0 0 0 0 0 0
## X1735 X1736 X1737 X1738 X1739 X1740 X1741 X1742 X1743 X1744
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1745 X1746 X1747 X1748 X1749 X1750 X1751 X1752 X1753 X1754
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1755 X1756 X1757 X1758 X1759 X1760 X1761 X1762 X1763 X1764
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1765 X1766 X1767 X1768 X1769 X1770 X1771 X1772 X1773 X1774
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1775 X1776 X1777 X1778 X1779 X1780 X1781 X1782 X1783 X1784
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0 0 0
## X1785 X1786 X1787 X1788 X1789 X1790 X1791 X1792 X1793 X1794
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1795 X1796 X1797 X1798 X1799 X1800 X1801 X1802 X1803 X1804
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1 0 0
## X1805 X1806 X1807 X1808 X1809 X1810 X1811 X1812 X1813 X1814
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1815 X1816 X1817 X1818 X1819 X1820 X1821 X1822 X1823 X1824
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0
## X1825 X1826 X1827 X1828 X1829 X1830 X1831 X1832 X1833 X1834
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1835 X1836 X1837 X1838 X1839 X1840 X1841 X1842 X1843 X1844
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0 0 0
## X1845 X1846 X1847 X1848 X1849 X1850 X1851 X1852 X1853 X1854
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0 0 1
## X1855 X1856 X1857 X1858 X1859 X1860 X1861 X1862 X1863 X1864
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0
## X1865 X1866 X1867 X1868 X1869 X1870 X1871 X1872 X1873 X1874
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1875 X1876 X1877 X1878 X1879 X1880 X1881 X1882 X1883 X1884
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0 0
## X1885 X1886 X1887 X1888 X1889 X1890 X1891 X1892 X1893 X1894
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 1 0
## X1895 X1896 X1897 X1898 X1899 X1900 X1901 X1902 X1903 X1904
## sample_ACAAA_Nel3 0 0 0 0 0 0 NA NA 1 0
## X1905 X1906 X1907 X1908 X1909 X1910 X1911 X1912 X1913 X1914
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0 1 1
## X1915 X1916 X1917 X1918 X1919 X1920 X1921 X1922 X1923 X1924
## sample_ACAAA_Nel3 0 0 0 1 1 0 1 0 1 0
## X1925 X1926 X1927 X1928 X1929
## sample_ACAAA_Nel3 NA NA NA NA NARemove individuals with >50% NAs
For our workflow, we’re going to want to find the NAs in each row of data, count them up, and if >50% of the SNPs are NA, then remove the entire row.
We could find the NAs in each row like this. First, find the NAs in row 1 and save it to a vector:
i_NAs01 <- find_NAs(bird_snps_num_t[1,])## Results: 28 NAs present
## .And figure how how many NAs there are with length()
length(i_NAs01)## [1] 28Then continue this many times:
i_NAs02 <- find_NAs(bird_snps_num_t[2,])## Results: 20 NAs present
## .i_NAs03 <- find_NAs(bird_snps_num_t[3,])## Results: 28 NAs present
## .i_NAs04 <- find_NAs(bird_snps_num_t[4,])## Results: 24 NAs present
## .by making a new vector for each row and updating the row number in the brackets. This would take a lot of time and be very prone to errors.
for() loops
This process of working on many rows is most easily done with a common programming approach called a for loop. The name at first doesn’t make sense; what it should be called is a “do something a bunch of times” loop.
It is called a “for” loop because you tell it something along the lines of: “FOR every row in this dataframe frame, do this …” In our case we’ll work on rows, but it can also work on columns, or anything else that can exist in R.
I’ll write a for() loop that will go through each row of
our SNP data and determine if >50% of the values are NA.
I’ll use our find_NA() function we just made.
To do this I’m going to want to have a few things:
N_rows: The total number of rows of data in our dataframeN_NA: A vector to hold how many NAs are in each rowN_SNPs: The total number of columns, so we can determine if >50% of the columns (SNPs) are NAs.
We can get the number of rows with nrow():
# call nrow() on bird_snps_num_t
N_rows <- nrow(bird_snps_num_t) # TODOWe can make a vector to store how many NAs are in each row like this,
where rep() repeats 0 for us as many times as we want.
N_NA <- rep(x = 0, times = N_rows)I can get the number of SNPs withncol()
# call ncol() on bird_snps_num_t
N_SNPs <- ncol(bird_snps_num_t) # TODOThe percentage of SNPs that are NA can be found as
length(i_NAs01)/N_SNPs*100## [1] 1.451529If we were doing this by hand we’d have to fill in the vector of the
number of NAs (N_NA) like this:
# Number of NAs in row 1
i_NAs01 <- find_NAs(bird_snps_num_t[1,])## Results: 28 NAs present
## .N_NA[1] <- length(i_NAs01)
# Number of NAs in row 2:
i_NAs02 <- find_NAs(bird_snps_num_t[2,])## Results: 20 NAs present
## .N_NA[2] <- length(i_NAs02)
# Number of NAs in row 3:.
# ... etcThat would not be fun. So we automate the process with a
for() loop. I won’t explain right now how whole thing work,
but take a look to get the general sense of what it is.
I’ll repeat the previous preparation code so its all in one place.
# N_rows
# number of rows (individuals)
N_rows <- nrow(bird_snps_num_t)
# N_NA
# vector to hold output (number of NAs)
N_NA <- rep(x = 0, times = N_rows)
# N_SNPs
# total number of columns (SNPs)
N_SNPs <- ncol(bird_snps_num_t)
# the for() loop
for(i in 1:N_rows){
# for each row, find the location of
## NAs with bird_snps_num_t()
i_NA <- find_NAs(bird_snps_num_t[i,])
# then determine how many NAs
## with length()
N_NA_i <- length(i_NA)
# then save the output to
## our storage vector
N_NA[i] <- N_NA_i
}## Results: 28 NAs present
## .Results: 20 NAs present
## .Results: 28 NAs present
## .Results: 24 NAs present
## .Results: 23 NAs present
## .Results: 63 NAs present
## .Results: 51 NAs present
## .Results: 38 NAs present
## .Results: 34 NAs present
## .Results: 24 NAs present
## .Results: 48 NAs present
## .Results: 21 NAs present
## .Results: 42 NAs present
## .Results: 78 NAs present
## .Results: 45 NAs present
## .Results: 21 NAs present
## .Results: 42 NAs present
## .Results: 34 NAs present
## .Results: 66 NAs present
## .Results: 54 NAs present
## .Results: 59 NAs present
## .Results: 52 NAs present
## .Results: 47 NAs present
## .Results: 31 NAs present
## .Results: 63 NAs present
## .Results: 40 NAs present
## .Results: 40 NAs present
## .Results: 22 NAs present
## .Results: 60 NAs present
## .Results: 48 NAs present
## .Results: 961 NAs present
## .Results: 478 NAs present
## .Results: 59 NAs present
## .Results: 26 NAs present
## .Results: 285 NAs present
## .Results: 409 NAs present
## .Results: 1140 NAs present
## .Results: 600 NAs present
## .Results: 1905 NAs present
## .Results: 25 NAs present
## .Results: 1247 NAs present
## .Results: 23 NAs present
## .Results: 750 NAs present
## .Results: 179 NAs present
## .Results: 433 NAs present
## .Results: 123 NAs present
## .Results: 65 NAs present
## .Results: 49 NAs present
## .Results: 192 NAs present
## .Results: 433 NAs present
## .Results: 66 NAs present
## .Results: 597 NAs present
## .Results: 1891 NAs present
## .Results: 207 NAs present
## .Results: 41 NAs present
## .Results: 268 NAs present
## .Results: 43 NAs present
## .Results: 110 NAs present
## .Results: 130 NAs present
## .Results: 90 NAs present
## .Results: 271 NAs present
## .Results: 92 NAs present
## .Results: 103 NAs present
## .Results: 175 NAs present
## .Results: 31 NAs present
## .Results: 66 NAs present
## .Results: 64 NAs present
## .Results: 400 NAs present
## .Results: 192 NAs present
## .Results: 251 NAs present
## .Results: 69 NAs present
## .Results: 58 NAs present
## .My vector N_SNPs now how the number of NAs in each row
of the dataframe.
head(N_NA)## [1] 28 20 28 24 23 63We can get a sense of the how many NAs there are in the rows of the dataset by making a histogram. Most rows have very few, and a few have a lot:
# Call hist() on N_NA
hist(N_NA) # TODO
The authors of the bird speciation paper decided to remove any row that was >50% NAs. There are 1929 SNPs, so 50% is about 964 SNPs.
# total number of columns
N_SNPs## [1] 1929# 50% of N_SNPs
cutoff50 <- N_SNPs*0.5I can add a line for the cutoff to the plot with
abline()
# Call hist() on N_NA
## add a vertical line at the cutoff value
## using abline()
hist(N_NA) # TODO
abline(v = cutoff50,
col = 2,
lwd = 2,
lty = 2)
After figuring out how many NAs there in each row, I can convert this to a percent.
percent_NA <- N_NA/N_SNPs*100I can plot these percentages and set the cutoff at 50 for 50%
# Call hist() on N_NA
## add a vertical line at 50%
## using abline()
hist(percent_NA) # TODO
abline(v = , # TODO
col = 2,
lwd = 2,
lty = 2)
I can determine the index value of each row with >50% NAs using
which()
# Call which() on percent_NA
i_NA_50percent <- which(percent_NA > 50) # TODOI use length() to see how many there are
# call length() on i_NA_50percent
length(i_NA_50percent) # TODO## [1] 4The index values happen to be:
i_NA_50percent## [1] 37 39 41 53There are 4 rows where 50% or more of the columns contain an NA
In the paper they say they removed 6, and I’m not sure where the discrepancy comes from. In order get up to 6 birds, I need to decrease the threshold to 38% missing.
which(percent_NA > 38)## [1] 31 37 39 41 43 53length(which(percent_NA > 38))## [1] 6Remove rows with >50% missing
I can remove the rows of data with >50% missing using negative indexing.
bird_snps_num_t02 <- bird_snps_num_t[-i_NA_50percent, ]I always need to check to make sure the previous and current data make sense.
dim(bird_snps_num_t)## [1] 72 1929dim(bird_snps_num_t02)## [1] 68 1929Determine sampling locations
In our workflow information about the samples like their population of origin is getting embedded in the row names of the dataframe. (In contrast to this, VCF files from the 1000 Genomes Project have a separate file with all the information).
Its going to become necessary in subsequent assignments to access this information, for example to color-code plots. It takes a little bit of code to get the information from these row names, so I’m not going to dig into it here except to say I’m using functions known as regular expressions to be able to edit the text in the row names.
First, let’s look at the row names.
# call row.names() on bird_snps_num_t
row_names <- (bird_snps_num_t) # TODO
# call head() on row_names
head(row_names) # TODO## [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11]
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 1 0 0 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0 0 0 0
## [,12] [,13] [,14] [,15] [,16] [,17] [,18] [,19] [,20]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 NA 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 1 0 0 0 0 0 0
## [,21] [,22] [,23] [,24] [,25] [,26] [,27] [,28] [,29]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0 1
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0 0
## [,30] [,31] [,32] [,33] [,34] [,35] [,36] [,37] [,38]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 1 1 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 1 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 1 1 1 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 1 0 1 0 0 0 0 0
## sample_CGATGT_Nel4 1 1 0 0 0 0 0 0 0
## [,39] [,40] [,41] [,42] [,43] [,44] [,45] [,46] [,47]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0 0
## [,48] [,49] [,50] [,51] [,52] [,53] [,54] [,55] [,56]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 NA 0 0 0
## [,57] [,58] [,59] [,60] [,61] [,62] [,63] [,64] [,65]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0 0
## [,66] [,67] [,68] [,69] [,70] [,71] [,72] [,73] [,74]
## sample_ACAAA_Nel3 0 0 1 0 0 0 1 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 1 1 0 0
## sample_AGCAT_Nel8 0 0 1 0 0 0 0 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 NA 0 0 0 0
## [,75] [,76] [,77] [,78] [,79] [,80] [,81] [,82] [,83]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 1 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0 0
## [,84] [,85] [,86] [,87] [,88] [,89] [,90] [,91] [,92]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 1 0 1
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 1 0 0
## [,93] [,94] [,95] [,96] [,97] [,98] [,99] [,100] [,101]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0 0
## [,102] [,103] [,104] [,105] [,106] [,107] [,108] [,109]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 1 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,110] [,111] [,112] [,113] [,114] [,115] [,116] [,117]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,118] [,119] [,120] [,121] [,122] [,123] [,124] [,125]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,126] [,127] [,128] [,129] [,130] [,131] [,132] [,133]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 NA 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 NA 0
## [,134] [,135] [,136] [,137] [,138] [,139] [,140] [,141]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 1 0 0 0 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,142] [,143] [,144] [,145] [,146] [,147] [,148] [,149]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,150] [,151] [,152] [,153] [,154] [,155] [,156] [,157]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,158] [,159] [,160] [,161] [,162] [,163] [,164] [,165]
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 1 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,166] [,167] [,168] [,169] [,170] [,171] [,172] [,173]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 1
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 1
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,174] [,175] [,176] [,177] [,178] [,179] [,180] [,181]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 NA NA 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,182] [,183] [,184] [,185] [,186] [,187] [,188] [,189]
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 1 0
## sample_AGCAT_Nel8 0 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 1 0
## [,190] [,191] [,192] [,193] [,194] [,195] [,196] [,197]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 1 0 0 0
## sample_AGCAT_Nel8 0 0 1 0 1 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0 0
## [,198] [,199] [,200] [,201] [,202] [,203] [,204] [,205]
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 1
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,206] [,207] [,208] [,209] [,210] [,211] [,212] [,213]
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0
## sample_ACAGTG_Nel5 0 NA 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 NA 0 0 0 0 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,214] [,215] [,216] [,217] [,218] [,219] [,220] [,221]
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 1 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 1 0 0 0 0
## [,222] [,223] [,224] [,225] [,226] [,227] [,228] [,229]
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0
## sample_ACAGTG_Nel5 0 1 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 1 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,230] [,231] [,232] [,233] [,234] [,235] [,236] [,237]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,238] [,239] [,240] [,241] [,242] [,243] [,244] [,245]
## sample_ACAAA_Nel3 0 0 1 1 1 1 0 0
## sample_ACAGTG_Nel5 0 0 0 0 1 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,246] [,247] [,248] [,249] [,250] [,251] [,252] [,253]
## sample_ACAAA_Nel3 1 0 0 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 1 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel10 1 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 1 0 0 0 0
## [,254] [,255] [,256] [,257] [,258] [,259] [,260] [,261]
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 1 0 0 0 0 0 1
## [,262] [,263] [,264] [,265] [,266] [,267] [,268] [,269]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 NA NA 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,270] [,271] [,272] [,273] [,274] [,275] [,276] [,277]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 1 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 1 0 0
## [,278] [,279] [,280] [,281] [,282] [,283] [,284] [,285]
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 1 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 1 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 1 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,286] [,287] [,288] [,289] [,290] [,291] [,292] [,293]
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 NA 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,294] [,295] [,296] [,297] [,298] [,299] [,300] [,301]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,302] [,303] [,304] [,305] [,306] [,307] [,308] [,309]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,310] [,311] [,312] [,313] [,314] [,315] [,316] [,317]
## sample_ACAAA_Nel3 0 0 1 0 0 0 1 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 1 1
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,318] [,319] [,320] [,321] [,322] [,323] [,324] [,325]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 1 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 1 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,326] [,327] [,328] [,329] [,330] [,331] [,332] [,333]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 1 0 1 0 0 0
## sample_AGCAT_Nel8 0 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0 0
## [,334] [,335] [,336] [,337] [,338] [,339] [,340] [,341]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,342] [,343] [,344] [,345] [,346] [,347] [,348] [,349]
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 1 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 1 0 0 0 0
## [,350] [,351] [,352] [,353] [,354] [,355] [,356] [,357]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 1
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,358] [,359] [,360] [,361] [,362] [,363] [,364] [,365]
## sample_ACAAA_Nel3 1 0 1 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 1 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 NA
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 NA
## [,366] [,367] [,368] [,369] [,370] [,371] [,372] [,373]
## sample_ACAAA_Nel3 1 0 0 1 0 0 1 0
## sample_ACAGTG_Nel5 1 0 0 0 0 0 1 0
## sample_AGCAT_Nel8 1 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel10 1 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 1 0 0 0 0 0 0 0
## [,374] [,375] [,376] [,377] [,378] [,379] [,380] [,381]
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 1 0 0 0 1
## sample_AGCAT_Nel8 0 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 1 0 0 0 0
## sample_CGATGT_Nel4 0 0 1 1 0 0 0 0
## [,382] [,383] [,384] [,385] [,386] [,387] [,388] [,389]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 1 0 0 1 0 0 1 0
## sample_AGCAT_Nel8 0 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 1 0
## [,390] [,391] [,392] [,393] [,394] [,395] [,396] [,397]
## sample_ACAAA_Nel3 0 1 1 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 1 0 1 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,398] [,399] [,400] [,401] [,402] [,403] [,404] [,405]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,406] [,407] [,408] [,409] [,410] [,411] [,412] [,413]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 1 0 0 0 1 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 1 0 0 0 1 0
## [,414] [,415] [,416] [,417] [,418] [,419] [,420] [,421]
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 1 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0 0
## [,422] [,423] [,424] [,425] [,426] [,427] [,428] [,429]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 1 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 1 0 0 0 0
## [,430] [,431] [,432] [,433] [,434] [,435] [,436] [,437]
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 1 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,438] [,439] [,440] [,441] [,442] [,443] [,444] [,445]
## sample_ACAAA_Nel3 0 0 0 0 0 0 1 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,446] [,447] [,448] [,449] [,450] [,451] [,452] [,453]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,454] [,455] [,456] [,457] [,458] [,459] [,460] [,461]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 1 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,462] [,463] [,464] [,465] [,466] [,467] [,468] [,469]
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 1 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 1 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 0 0 0 0 0 1 0 0
## [,470] [,471] [,472] [,473] [,474] [,475] [,476] [,477]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 1 0 0 0 0 0 0
## [,478] [,479] [,480] [,481] [,482] [,483] [,484] [,485]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 1 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,486] [,487] [,488] [,489] [,490] [,491] [,492] [,493]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,494] [,495] [,496] [,497] [,498] [,499] [,500] [,501]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 1
## sample_CGATGT_Nel4 0 0 1 0 0 0 0 0
## [,502] [,503] [,504] [,505] [,506] [,507] [,508] [,509]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 1 0 0 0 1 0 0
## sample_AGCAT_Nel8 0 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 1 0 0
## [,510] [,511] [,512] [,513] [,514] [,515] [,516] [,517]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 1
## sample_AGCAT_Nel8 0 0 0 1 0 0 0 1
## sample_ATGAAAC_Nel10 0 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 1 0 0 0 1
## [,518] [,519] [,520] [,521] [,522] [,523] [,524] [,525]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 1 0 0
## [,526] [,527] [,528] [,529] [,530] [,531] [,532] [,533]
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 1 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0 0
## [,534] [,535] [,536] [,537] [,538] [,539] [,540] [,541]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,542] [,543] [,544] [,545] [,546] [,547] [,548] [,549]
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 1 0
## sample_AGCAT_Nel8 0 0 0 0 1 0 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0 0
## [,550] [,551] [,552] [,553] [,554] [,555] [,556] [,557]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 1 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,558] [,559] [,560] [,561] [,562] [,563] [,564] [,565]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 1 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,566] [,567] [,568] [,569] [,570] [,571] [,572] [,573]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,574] [,575] [,576] [,577] [,578] [,579] [,580] [,581]
## sample_ACAAA_Nel3 0 0 1 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,582] [,583] [,584] [,585] [,586] [,587] [,588] [,589]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel10 0 0 0 NA NA 0 1 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 1
## [,590] [,591] [,592] [,593] [,594] [,595] [,596] [,597]
## sample_ACAAA_Nel3 1 0 0 0 1 1 0 0
## sample_ACAGTG_Nel5 1 0 0 0 0 1 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 1 1 1 0 0
## sample_CGATGT_Nel4 1 0 0 0 1 0 0 0
## [,598] [,599] [,600] [,601] [,602] [,603] [,604] [,605]
## sample_ACAAA_Nel3 0 1 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 1 0
## [,606] [,607] [,608] [,609] [,610] [,611] [,612] [,613]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 1 0 1 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,614] [,615] [,616] [,617] [,618] [,619] [,620] [,621]
## sample_ACAAA_Nel3 1 0 1 0 0 0 0 0
## sample_ACAGTG_Nel5 1 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 1 0 0 0 1 0
## sample_ATGAAAC_Nel10 0 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 1 0 1 0 0 0 0 0
## [,622] [,623] [,624] [,625] [,626] [,627] [,628] [,629]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,630] [,631] [,632] [,633] [,634] [,635] [,636] [,637]
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 1 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 1 0 0 0 0 0
## sample_CGATGT_Nel4 1 0 0 0 0 0 0 0
## [,638] [,639] [,640] [,641] [,642] [,643] [,644] [,645]
## sample_ACAAA_Nel3 1 0 0 1 1 0 0 0
## sample_ACAGTG_Nel5 1 0 0 0 1 0 0 0
## sample_AGCAT_Nel8 1 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel10 1 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 1 0 0 0 0 0 0 0
## [,646] [,647] [,648] [,649] [,650] [,651] [,652] [,653]
## sample_ACAAA_Nel3 1 1 0 0 0 1 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,654] [,655] [,656] [,657] [,658] [,659] [,660] [,661]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 1 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 1 0
## [,662] [,663] [,664] [,665] [,666] [,667] [,668] [,669]
## sample_ACAAA_Nel3 0 0 NA NA NA NA NA NA
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 NA 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,670] [,671] [,672] [,673] [,674] [,675] [,676] [,677]
## sample_ACAAA_Nel3 1 0 1 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 1 0 0 0 0
## sample_AGCAT_Nel8 1 1 0 1 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 1 1 0 0 0 1
## sample_ATGAAAC_Nel15 1 0 0 1 0 0 0 0
## sample_CGATGT_Nel4 0 NA NA NA NA NA NA 0
## [,678] [,679] [,680] [,681] [,682] [,683] [,684] [,685]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 1 0 0 1
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 1 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0 0
## [,686] [,687] [,688] [,689] [,690] [,691] [,692] [,693]
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 NA
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 1 0 0
## [,694] [,695] [,696] [,697] [,698] [,699] [,700] [,701]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 NA NA 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 1 0 0 0 1 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 1 0
## [,702] [,703] [,704] [,705] [,706] [,707] [,708] [,709]
## sample_ACAAA_Nel3 0 0 0 0 1 1 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 1 0 1
## sample_AGCAT_Nel8 0 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 1 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 1 0 0 1
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,710] [,711] [,712] [,713] [,714] [,715] [,716] [,717]
## sample_ACAAA_Nel3 0 0 1 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 1 1 0 0 0 0
## sample_AGCAT_Nel8 0 0 1 1 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 1 1 0 0 0 0
## sample_CGATGT_Nel4 0 0 1 1 0 0 0 0
## [,718] [,719] [,720] [,721] [,722] [,723] [,724] [,725]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,726] [,727] [,728] [,729] [,730] [,731] [,732] [,733]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,734] [,735] [,736] [,737] [,738] [,739] [,740] [,741]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,742] [,743] [,744] [,745] [,746] [,747] [,748] [,749]
## sample_ACAAA_Nel3 1 0 NA 0 0 0 1 0
## sample_ACAGTG_Nel5 1 0 1 0 0 0 0 1
## sample_AGCAT_Nel8 0 0 1 0 0 0 0 1
## sample_ATGAAAC_Nel10 0 0 1 0 0 0 0 1
## sample_ATGAAAC_Nel15 0 0 1 0 0 0 0 1
## sample_CGATGT_Nel4 0 0 NA 0 0 0 1 1
## [,750] [,751] [,752] [,753] [,754] [,755] [,756] [,757]
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel10 1 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,758] [,759] [,760] [,761] [,762] [,763] [,764] [,765]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,766] [,767] [,768] [,769] [,770] [,771] [,772] [,773]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,774] [,775] [,776] [,777] [,778] [,779] [,780] [,781]
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 1 1 1 0 0 0
## sample_AGCAT_Nel8 0 0 1 1 1 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 1 0 1 0 0 0
## sample_CGATGT_Nel4 0 0 1 0 1 0 0 0
## [,782] [,783] [,784] [,785] [,786] [,787] [,788] [,789]
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 1 1 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 1 0 0 NA NA NA
## sample_CGATGT_Nel4 0 0 1 0 0 0 0 0
## [,790] [,791] [,792] [,793] [,794] [,795] [,796] [,797]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 1 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0 0
## [,798] [,799] [,800] [,801] [,802] [,803] [,804] [,805]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,806] [,807] [,808] [,809] [,810] [,811] [,812] [,813]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 1 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 1 0 0 1 0
## [,814] [,815] [,816] [,817] [,818] [,819] [,820] [,821]
## sample_ACAAA_Nel3 0 0 1 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 1 1 0 0 0 0
## sample_AGCAT_Nel8 0 0 1 1 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 1 NA 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 1 NA 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 1 0 0 0 0
## [,822] [,823] [,824] [,825] [,826] [,827] [,828] [,829]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,830] [,831] [,832] [,833] [,834] [,835] [,836] [,837]
## sample_ACAAA_Nel3 0 0 0 0 1 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 1 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 1 0 0 0 0 0 0
## [,838] [,839] [,840] [,841] [,842] [,843] [,844] [,845]
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0
## sample_ACAGTG_Nel5 0 0 1 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 1 0 0 1 0 0
## sample_ATGAAAC_Nel15 0 0 1 0 0 1 1 0
## sample_CGATGT_Nel4 0 0 1 0 0 0 0 0
## [,846] [,847] [,848] [,849] [,850] [,851] [,852] [,853]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel10 1 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 1
## sample_CGATGT_Nel4 1 0 0 0 0 0 0 1
## [,854] [,855] [,856] [,857] [,858] [,859] [,860] [,861]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,862] [,863] [,864] [,865] [,866] [,867] [,868] [,869]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 1 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,870] [,871] [,872] [,873] [,874] [,875] [,876] [,877]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 1
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 1 0
## [,878] [,879] [,880] [,881] [,882] [,883] [,884] [,885]
## sample_ACAAA_Nel3 0 0 0 0 0 1 0 0
## sample_ACAGTG_Nel5 0 0 1 0 0 1 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 NA NA 0
## [,886] [,887] [,888] [,889] [,890] [,891] [,892] [,893]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 1 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 1 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,894] [,895] [,896] [,897] [,898] [,899] [,900] [,901]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,902] [,903] [,904] [,905] [,906] [,907] [,908] [,909]
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 1 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 1 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 1 0 0
## sample_CGATGT_Nel4 1 0 0 0 0 0 0 0
## [,910] [,911] [,912] [,913] [,914] [,915] [,916] [,917]
## sample_ACAAA_Nel3 0 0 1 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,918] [,919] [,920] [,921] [,922] [,923] [,924] [,925]
## sample_ACAAA_Nel3 1 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 1 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,926] [,927] [,928] [,929] [,930] [,931] [,932] [,933]
## sample_ACAAA_Nel3 0 0 0 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 1 0 1 0 0
## [,934] [,935] [,936] [,937] [,938] [,939] [,940] [,941]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,942] [,943] [,944] [,945] [,946] [,947] [,948] [,949]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,950] [,951] [,952] [,953] [,954] [,955] [,956] [,957]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,958] [,959] [,960] [,961] [,962] [,963] [,964] [,965]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 1
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 1
## [,966] [,967] [,968] [,969] [,970] [,971] [,972] [,973]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,974] [,975] [,976] [,977] [,978] [,979] [,980] [,981]
## sample_ACAAA_Nel3 0 1 0 0 1 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 1 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 0 NA NA NA 1 0 0 0
## sample_CGATGT_Nel4 0 1 0 0 1 0 1 0
## [,982] [,983] [,984] [,985] [,986] [,987] [,988] [,989]
## sample_ACAAA_Nel3 1 NA NA NA NA NA NA NA
## sample_ACAGTG_Nel5 1 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 1 NA NA NA NA NA NA NA
## sample_ATGAAAC_Nel10 1 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 1 0 0 0 0 0 0 0
## [,990] [,991] [,992] [,993] [,994] [,995] [,996] [,997]
## sample_ACAAA_Nel3 NA 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 1 0 0 0 0
## sample_AGCAT_Nel8 NA 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0 0
## [,998] [,999] [,1000] [,1001] [,1002] [,1003] [,1004]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 1 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1005] [,1006] [,1007] [,1008] [,1009] [,1010] [,1011]
## sample_ACAAA_Nel3 0 0 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 1
## sample_AGCAT_Nel8 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 1
## sample_CGATGT_Nel4 0 0 NA NA NA NA NA
## [,1012] [,1013] [,1014] [,1015] [,1016] [,1017] [,1018]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 NA NA 0 0 0 0 0
## [,1019] [,1020] [,1021] [,1022] [,1023] [,1024] [,1025]
## sample_ACAAA_Nel3 0 1 0 0 0 0 0
## sample_ACAGTG_Nel5 0 1 0 0 0 0 0
## sample_AGCAT_Nel8 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 1 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1026] [,1027] [,1028] [,1029] [,1030] [,1031] [,1032]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1033] [,1034] [,1035] [,1036] [,1037] [,1038] [,1039]
## sample_ACAAA_Nel3 0 0 0 0 0 1 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 1 1 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 0 0 0 1 0 0 0
## [,1040] [,1041] [,1042] [,1043] [,1044] [,1045] [,1046]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1047] [,1048] [,1049] [,1050] [,1051] [,1052] [,1053]
## sample_ACAAA_Nel3 0 0 0 1 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 1 0 0 1
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 1 0 NA NA
## [,1054] [,1055] [,1056] [,1057] [,1058] [,1059] [,1060]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 1 0 0 1 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 0
## sample_CGATGT_Nel4 NA NA NA NA NA NA NA
## [,1061] [,1062] [,1063] [,1064] [,1065] [,1066] [,1067]
## sample_ACAAA_Nel3 0 0 0 1 0 0 0
## sample_ACAGTG_Nel5 0 0 1 0 0 0 0
## sample_AGCAT_Nel8 1 0 0 1 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 0 0 1 0 0 0 0
## sample_CGATGT_Nel4 NA NA NA NA NA NA 0
## [,1068] [,1069] [,1070] [,1071] [,1072] [,1073] [,1074]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 1
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 1
## sample_CGATGT_Nel4 0 0 0 0 0 0 1
## [,1075] [,1076] [,1077] [,1078] [,1079] [,1080] [,1081]
## sample_ACAAA_Nel3 0 0 0 0 1 1 0
## sample_ACAGTG_Nel5 0 0 0 0 1 1 0
## sample_AGCAT_Nel8 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 1 0 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0
## [,1082] [,1083] [,1084] [,1085] [,1086] [,1087] [,1088]
## sample_ACAAA_Nel3 0 0 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 1 0 0 0 0 0 0
## [,1089] [,1090] [,1091] [,1092] [,1093] [,1094] [,1095]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1096] [,1097] [,1098] [,1099] [,1100] [,1101] [,1102]
## sample_ACAAA_Nel3 0 0 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 1 0 0 0 0
## sample_AGCAT_Nel8 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 1 0 0 0 0
## sample_CGATGT_Nel4 0 0 1 0 0 0 0
## [,1103] [,1104] [,1105] [,1106] [,1107] [,1108] [,1109]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 1
## sample_CGATGT_Nel4 0 0 0 0 0 0 1
## [,1110] [,1111] [,1112] [,1113] [,1114] [,1115] [,1116]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1117] [,1118] [,1119] [,1120] [,1121] [,1122] [,1123]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1124] [,1125] [,1126] [,1127] [,1128] [,1129] [,1130]
## sample_ACAAA_Nel3 0 0 0 0 0 1 0
## sample_ACAGTG_Nel5 0 0 0 0 0 1 0
## sample_AGCAT_Nel8 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 0 0 0 0 0 1 0
## [,1131] [,1132] [,1133] [,1134] [,1135] [,1136] [,1137]
## sample_ACAAA_Nel3 0 0 1 1 1 1 1
## sample_ACAGTG_Nel5 0 1 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel10 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 1 1 1 1 1
## sample_CGATGT_Nel4 0 0 1 1 1 1 1
## [,1138] [,1139] [,1140] [,1141] [,1142] [,1143] [,1144]
## sample_ACAAA_Nel3 0 0 0 0 0 1 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1145] [,1146] [,1147] [,1148] [,1149] [,1150] [,1151]
## sample_ACAAA_Nel3 0 0 0 1 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 1 1 0 0
## sample_ATGAAAC_Nel10 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 1 0 0 0 0 0
## [,1152] [,1153] [,1154] [,1155] [,1156] [,1157] [,1158]
## sample_ACAAA_Nel3 0 0 0 0 0 0 NA
## sample_ACAGTG_Nel5 1 0 1 0 0 0 NA
## sample_AGCAT_Nel8 1 0 1 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1159] [,1160] [,1161] [,1162] [,1163] [,1164] [,1165]
## sample_ACAAA_Nel3 NA 0 0 0 0 0 0
## sample_ACAGTG_Nel5 NA 1 0 0 0 0 0
## sample_AGCAT_Nel8 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 0
## sample_CGATGT_Nel4 1 1 0 0 0 0 0
## [,1166] [,1167] [,1168] [,1169] [,1170] [,1171] [,1172]
## sample_ACAAA_Nel3 0 0 1 1 0 0 0
## sample_ACAGTG_Nel5 0 0 1 1 0 0 0
## sample_AGCAT_Nel8 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel10 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 1 0 0 0 0
## sample_CGATGT_Nel4 0 1 1 0 0 0 0
## [,1173] [,1174] [,1175] [,1176] [,1177] [,1178] [,1179]
## sample_ACAAA_Nel3 1 0 1 1 0 0 0
## sample_ACAGTG_Nel5 1 0 1 NA NA 0 0
## sample_AGCAT_Nel8 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 1 0 0 0 0
## sample_CGATGT_Nel4 1 0 0 1 0 0 0
## [,1180] [,1181] [,1182] [,1183] [,1184] [,1185] [,1186]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 1
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 1
## [,1187] [,1188] [,1189] [,1190] [,1191] [,1192] [,1193]
## sample_ACAAA_Nel3 1 0 0 1 0 0 0
## sample_ACAGTG_Nel5 1 0 0 1 0 1 0
## sample_AGCAT_Nel8 1 0 1 1 0 0 0
## sample_ATGAAAC_Nel10 1 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 1 0 0 0
## sample_CGATGT_Nel4 1 0 0 1 0 0 0
## [,1194] [,1195] [,1196] [,1197] [,1198] [,1199] [,1200]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 1 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0
## [,1201] [,1202] [,1203] [,1204] [,1205] [,1206] [,1207]
## sample_ACAAA_Nel3 0 0 0 0 0 1 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1208] [,1209] [,1210] [,1211] [,1212] [,1213] [,1214]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1215] [,1216] [,1217] [,1218] [,1219] [,1220] [,1221]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 1 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 1 1 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1222] [,1223] [,1224] [,1225] [,1226] [,1227] [,1228]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 1 0 0 0 0 0 0
## [,1229] [,1230] [,1231] [,1232] [,1233] [,1234] [,1235]
## sample_ACAAA_Nel3 0 1 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 1 0 0 0 0
## sample_CGATGT_Nel4 0 1 1 0 0 0 0
## [,1236] [,1237] [,1238] [,1239] [,1240] [,1241] [,1242]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1243] [,1244] [,1245] [,1246] [,1247] [,1248] [,1249]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 1 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1250] [,1251] [,1252] [,1253] [,1254] [,1255] [,1256]
## sample_ACAAA_Nel3 1 0 0 0 0 1 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1257] [,1258] [,1259] [,1260] [,1261] [,1262] [,1263]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1264] [,1265] [,1266] [,1267] [,1268] [,1269] [,1270]
## sample_ACAAA_Nel3 0 0 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 1 1 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 1 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1271] [,1272] [,1273] [,1274] [,1275] [,1276] [,1277]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel10 0 1 1 0 0 0 0
## sample_ATGAAAC_Nel15 0 1 1 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1278] [,1279] [,1280] [,1281] [,1282] [,1283] [,1284]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1285] [,1286] [,1287] [,1288] [,1289] [,1290] [,1291]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1292] [,1293] [,1294] [,1295] [,1296] [,1297] [,1298]
## sample_ACAAA_Nel3 0 0 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel10 0 0 0 1 0 1 1
## sample_ATGAAAC_Nel15 0 0 0 1 0 1 0
## sample_CGATGT_Nel4 0 0 0 1 0 0 1
## [,1299] [,1300] [,1301] [,1302] [,1303] [,1304] [,1305]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 1 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1306] [,1307] [,1308] [,1309] [,1310] [,1311] [,1312]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1313] [,1314] [,1315] [,1316] [,1317] [,1318] [,1319]
## sample_ACAAA_Nel3 0 0 0 1 0 0 0
## sample_ACAGTG_Nel5 0 0 0 1 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 1 0
## [,1320] [,1321] [,1322] [,1323] [,1324] [,1325] [,1326]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 1 0
## [,1327] [,1328] [,1329] [,1330] [,1331] [,1332] [,1333]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 NA
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 NA
## sample_ATGAAAC_Nel15 0 1 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1334] [,1335] [,1336] [,1337] [,1338] [,1339] [,1340]
## sample_ACAAA_Nel3 1 0 0 1 0 0 0
## sample_ACAGTG_Nel5 1 0 0 1 0 0 0
## sample_AGCAT_Nel8 1 0 0 1 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 1 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1341] [,1342] [,1343] [,1344] [,1345] [,1346] [,1347]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1348] [,1349] [,1350] [,1351] [,1352] [,1353] [,1354]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1355] [,1356] [,1357] [,1358] [,1359] [,1360] [,1361]
## sample_ACAAA_Nel3 1 0 0 0 1 0 0
## sample_ACAGTG_Nel5 1 0 0 0 1 0 0
## sample_AGCAT_Nel8 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1362] [,1363] [,1364] [,1365] [,1366] [,1367] [,1368]
## sample_ACAAA_Nel3 0 0 0 0 0 1 0
## sample_ACAGTG_Nel5 0 0 0 0 0 1 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1369] [,1370] [,1371] [,1372] [,1373] [,1374] [,1375]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 1 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1376] [,1377] [,1378] [,1379] [,1380] [,1381] [,1382]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 1 1 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 1 1 0 0 0 0
## [,1383] [,1384] [,1385] [,1386] [,1387] [,1388] [,1389]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 NA 0 0
## [,1390] [,1391] [,1392] [,1393] [,1394] [,1395] [,1396]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 1 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1397] [,1398] [,1399] [,1400] [,1401] [,1402] [,1403]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 1 0 0 0 1
## sample_AGCAT_Nel8 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 1 0 0 0 0
## [,1404] [,1405] [,1406] [,1407] [,1408] [,1409] [,1410]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1411] [,1412] [,1413] [,1414] [,1415] [,1416] [,1417]
## sample_ACAAA_Nel3 0 1 0 0 1 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 1 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel15 0 0 1 0 1 0 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0
## [,1418] [,1419] [,1420] [,1421] [,1422] [,1423] [,1424]
## sample_ACAAA_Nel3 0 0 0 0 1 0 1
## sample_ACAGTG_Nel5 0 0 0 0 1 0 1
## sample_AGCAT_Nel8 0 0 0 0 1 0 1
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 1
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 1
## sample_CGATGT_Nel4 0 0 0 0 1 0 1
## [,1425] [,1426] [,1427] [,1428] [,1429] [,1430] [,1431]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 1 0 1 0 0
## sample_AGCAT_Nel8 0 0 0 0 1 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 1 1 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1432] [,1433] [,1434] [,1435] [,1436] [,1437] [,1438]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1439] [,1440] [,1441] [,1442] [,1443] [,1444] [,1445]
## sample_ACAAA_Nel3 0 0 0 0 1 0 0
## sample_ACAGTG_Nel5 0 1 0 0 0 0 0
## sample_AGCAT_Nel8 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 1 0 0 0
## sample_CGATGT_Nel4 0 1 0 1 0 0 0
## [,1446] [,1447] [,1448] [,1449] [,1450] [,1451] [,1452]
## sample_ACAAA_Nel3 0 0 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 1 1
## sample_AGCAT_Nel8 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel10 NA NA 0 0 0 0 1
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 NA NA 0 0 0 0 1
## [,1453] [,1454] [,1455] [,1456] [,1457] [,1458] [,1459]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0
## [,1460] [,1461] [,1462] [,1463] [,1464] [,1465] [,1466]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1467] [,1468] [,1469] [,1470] [,1471] [,1472] [,1473]
## sample_ACAAA_Nel3 0 0 0 NA NA 0 0
## sample_ACAGTG_Nel5 0 0 0 1 0 0 0
## sample_AGCAT_Nel8 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 NA NA 0 0
## sample_CGATGT_Nel4 0 0 0 1 0 0 0
## [,1474] [,1475] [,1476] [,1477] [,1478] [,1479] [,1480]
## sample_ACAAA_Nel3 0 0 0 0 1 1 0
## sample_ACAGTG_Nel5 0 0 0 0 1 1 0
## sample_AGCAT_Nel8 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel15 0 0 0 0 1 1 0
## sample_CGATGT_Nel4 0 0 0 0 0 1 0
## [,1481] [,1482] [,1483] [,1484] [,1485] [,1486] [,1487]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 1 0 0 0
## sample_AGCAT_Nel8 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1488] [,1489] [,1490] [,1491] [,1492] [,1493] [,1494]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1495] [,1496] [,1497] [,1498] [,1499] [,1500] [,1501]
## sample_ACAAA_Nel3 1 0 0 0 0 0 0
## sample_ACAGTG_Nel5 1 0 0 0 1 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 1 1
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 1
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 1
## sample_CGATGT_Nel4 0 0 0 0 0 0 1
## [,1502] [,1503] [,1504] [,1505] [,1506] [,1507] [,1508]
## sample_ACAAA_Nel3 1 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 1 0 0 0 0 NA NA
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 1 0 0 0 0 0 0
## [,1509] [,1510] [,1511] [,1512] [,1513] [,1514] [,1515]
## sample_ACAAA_Nel3 0 1 1 1 1 0 0
## sample_ACAGTG_Nel5 0 1 1 1 1 0 0
## sample_AGCAT_Nel8 0 1 1 1 1 0 0
## sample_ATGAAAC_Nel10 NA NA NA NA NA NA 1
## sample_ATGAAAC_Nel15 0 1 1 1 1 0 0
## sample_CGATGT_Nel4 0 1 1 1 1 0 0
## [,1516] [,1517] [,1518] [,1519] [,1520] [,1521] [,1522]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 1 0 0 0
## sample_AGCAT_Nel8 0 0 0 1 0 0 1
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 1 1 0 0
## [,1523] [,1524] [,1525] [,1526] [,1527] [,1528] [,1529]
## sample_ACAAA_Nel3 0 0 0 0 1 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 NA 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 NA 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 NA 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0
## [,1530] [,1531] [,1532] [,1533] [,1534] [,1535] [,1536]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1537] [,1538] [,1539] [,1540] [,1541] [,1542] [,1543]
## sample_ACAAA_Nel3 NA 0 0 0 0 0 0
## sample_ACAGTG_Nel5 NA NA NA NA NA NA NA
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 1 1 1 0 1 1
## sample_CGATGT_Nel4 NA NA NA NA NA NA NA
## [,1544] [,1545] [,1546] [,1547] [,1548] [,1549] [,1550]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 NA 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 0
## sample_CGATGT_Nel4 NA 0 0 0 0 0 0
## [,1551] [,1552] [,1553] [,1554] [,1555] [,1556] [,1557]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 1 0 0 0 1
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 1
## sample_CGATGT_Nel4 0 0 0 0 0 0 1
## [,1558] [,1559] [,1560] [,1561] [,1562] [,1563] [,1564]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 1 0
## sample_AGCAT_Nel8 0 0 1 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1565] [,1566] [,1567] [,1568] [,1569] [,1570] [,1571]
## sample_ACAAA_Nel3 0 1 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 1 0 0 0 1
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 1 0 0 0 0 0
## sample_CGATGT_Nel4 0 1 0 1 0 1 0
## [,1572] [,1573] [,1574] [,1575] [,1576] [,1577] [,1578]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 NA NA NA
## [,1579] [,1580] [,1581] [,1582] [,1583] [,1584] [,1585]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 NA NA NA 0 0 NA 0
## [,1586] [,1587] [,1588] [,1589] [,1590] [,1591] [,1592]
## sample_ACAAA_Nel3 0 0 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 1
## [,1593] [,1594] [,1595] [,1596] [,1597] [,1598] [,1599]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 NA 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0
## [,1600] [,1601] [,1602] [,1603] [,1604] [,1605] [,1606]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 1 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1607] [,1608] [,1609] [,1610] [,1611] [,1612] [,1613]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1614] [,1615] [,1616] [,1617] [,1618] [,1619] [,1620]
## sample_ACAAA_Nel3 0 0 0 1 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 1 0
## sample_AGCAT_Nel8 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel10 1 1 0 0 0 1 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 0 0 0 0 0 1 1
## [,1621] [,1622] [,1623] [,1624] [,1625] [,1626] [,1627]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1628] [,1629] [,1630] [,1631] [,1632] [,1633] [,1634]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1635] [,1636] [,1637] [,1638] [,1639] [,1640] [,1641]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 1 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1642] [,1643] [,1644] [,1645] [,1646] [,1647] [,1648]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 1
## [,1649] [,1650] [,1651] [,1652] [,1653] [,1654] [,1655]
## sample_ACAAA_Nel3 0 0 0 1 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 1
## sample_AGCAT_Nel8 0 0 0 1 0 0 1
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel15 0 0 0 1 0 0 1
## sample_CGATGT_Nel4 0 1 0 0 0 0 0
## [,1656] [,1657] [,1658] [,1659] [,1660] [,1661] [,1662]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1663] [,1664] [,1665] [,1666] [,1667] [,1668] [,1669]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 1 0 0 0 0 0
## sample_AGCAT_Nel8 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 1 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 1 0 0 0 0
## [,1670] [,1671] [,1672] [,1673] [,1674] [,1675] [,1676]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 NA 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1677] [,1678] [,1679] [,1680] [,1681] [,1682] [,1683]
## sample_ACAAA_Nel3 0 0 0 0 1 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 1 0 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0
## [,1684] [,1685] [,1686] [,1687] [,1688] [,1689] [,1690]
## sample_ACAAA_Nel3 0 0 0 1 0 0 0
## sample_ACAGTG_Nel5 0 1 0 1 0 0 0
## sample_AGCAT_Nel8 0 1 0 1 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 0 1 0 1 0 0 0
## sample_CGATGT_Nel4 0 0 0 1 0 0 0
## [,1691] [,1692] [,1693] [,1694] [,1695] [,1696] [,1697]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 1 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 0 0 0 0 0 1 0
## [,1698] [,1699] [,1700] [,1701] [,1702] [,1703] [,1704]
## sample_ACAAA_Nel3 0 0 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1705] [,1706] [,1707] [,1708] [,1709] [,1710] [,1711]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 1 0 0 1 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 1 0 0 0 0
## sample_CGATGT_Nel4 0 0 1 0 0 0 0
## [,1712] [,1713] [,1714] [,1715] [,1716] [,1717] [,1718]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1719] [,1720] [,1721] [,1722] [,1723] [,1724] [,1725]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 1 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1726] [,1727] [,1728] [,1729] [,1730] [,1731] [,1732]
## sample_ACAAA_Nel3 1 1 0 0 0 0 0
## sample_ACAGTG_Nel5 0 1 0 0 0 1 0
## sample_AGCAT_Nel8 1 0 0 0 0 1 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 1
## [,1733] [,1734] [,1735] [,1736] [,1737] [,1738] [,1739]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1740] [,1741] [,1742] [,1743] [,1744] [,1745] [,1746]
## sample_ACAAA_Nel3 1 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 1 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 1 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 1 0 0 0
## [,1747] [,1748] [,1749] [,1750] [,1751] [,1752] [,1753]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1754] [,1755] [,1756] [,1757] [,1758] [,1759] [,1760]
## sample_ACAAA_Nel3 0 0 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 NA NA NA 0 0
## sample_ATGAAAC_Nel15 0 0 NA NA NA 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1761] [,1762] [,1763] [,1764] [,1765] [,1766] [,1767]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 1 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 1 0 0 0 0 0
## sample_CGATGT_Nel4 0 1 0 0 0 0 NA
## [,1768] [,1769] [,1770] [,1771] [,1772] [,1773] [,1774]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 NA 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 NA 0 0 0 0 NA 0
## [,1775] [,1776] [,1777] [,1778] [,1779] [,1780] [,1781]
## sample_ACAAA_Nel3 0 0 0 0 1 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 1 0 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0
## [,1782] [,1783] [,1784] [,1785] [,1786] [,1787] [,1788]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1789] [,1790] [,1791] [,1792] [,1793] [,1794] [,1795]
## sample_ACAAA_Nel3 0 1 0 0 0 0 0
## sample_ACAGTG_Nel5 0 1 0 0 0 0 0
## sample_AGCAT_Nel8 0 1 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 1 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1796] [,1797] [,1798] [,1799] [,1800] [,1801] [,1802]
## sample_ACAAA_Nel3 0 0 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 1
## sample_AGCAT_Nel8 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 1
## sample_CGATGT_Nel4 0 0 0 0 0 0 1
## [,1803] [,1804] [,1805] [,1806] [,1807] [,1808] [,1809]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 1 0 0 0 0 0 0
## [,1810] [,1811] [,1812] [,1813] [,1814] [,1815] [,1816]
## sample_ACAAA_Nel3 0 0 0 0 0 1 0
## sample_ACAGTG_Nel5 0 0 0 0 0 1 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 1 0 0 0 1 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 1 0
## sample_CGATGT_Nel4 0 0 0 0 0 1 0
## [,1817] [,1818] [,1819] [,1820] [,1821] [,1822] [,1823]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 1 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1824] [,1825] [,1826] [,1827] [,1828] [,1829] [,1830]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 1 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1831] [,1832] [,1833] [,1834] [,1835] [,1836] [,1837]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1838] [,1839] [,1840] [,1841] [,1842] [,1843] [,1844]
## sample_ACAAA_Nel3 0 0 1 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 1
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 1
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1845] [,1846] [,1847] [,1848] [,1849] [,1850] [,1851]
## sample_ACAAA_Nel3 0 0 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 1
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1852] [,1853] [,1854] [,1855] [,1856] [,1857] [,1858]
## sample_ACAAA_Nel3 0 0 1 1 0 0 0
## sample_ACAGTG_Nel5 0 0 1 1 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 1 1 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 1 0 0 0
## sample_CGATGT_Nel4 0 0 1 1 0 0 0
## [,1859] [,1860] [,1861] [,1862] [,1863] [,1864] [,1865]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1866] [,1867] [,1868] [,1869] [,1870] [,1871] [,1872]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 1 0 1 0 0
## [,1873] [,1874] [,1875] [,1876] [,1877] [,1878] [,1879]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1880] [,1881] [,1882] [,1883] [,1884] [,1885] [,1886]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1887] [,1888] [,1889] [,1890] [,1891] [,1892] [,1893]
## sample_ACAAA_Nel3 0 0 0 0 0 0 1
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel10 0 0 0 0 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 0 0 0
## [,1894] [,1895] [,1896] [,1897] [,1898] [,1899] [,1900]
## sample_ACAAA_Nel3 0 0 0 0 0 0 0
## sample_ACAGTG_Nel5 0 0 0 0 0 0 0
## sample_AGCAT_Nel8 0 0 0 0 1 0 0
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 0
## sample_ATGAAAC_Nel15 0 0 0 1 0 0 0
## sample_CGATGT_Nel4 0 0 0 0 1 0 0
## [,1901] [,1902] [,1903] [,1904] [,1905] [,1906] [,1907]
## sample_ACAAA_Nel3 NA NA 1 0 0 0 1
## sample_ACAGTG_Nel5 0 0 1 0 0 0 0
## sample_AGCAT_Nel8 0 0 1 0 0 0 1
## sample_ATGAAAC_Nel10 NA NA 1 0 0 0 1
## sample_ATGAAAC_Nel15 0 0 0 0 0 0 1
## sample_CGATGT_Nel4 0 0 1 0 0 0 1
## [,1908] [,1909] [,1910] [,1911] [,1912] [,1913] [,1914]
## sample_ACAAA_Nel3 0 0 0 0 0 1 1
## sample_ACAGTG_Nel5 0 0 0 1 0 0 1
## sample_AGCAT_Nel8 0 NA NA NA NA NA 0
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 1
## sample_ATGAAAC_Nel15 0 0 NA NA NA NA 0
## sample_CGATGT_Nel4 0 0 0 1 0 0 1
## [,1915] [,1916] [,1917] [,1918] [,1919] [,1920] [,1921]
## sample_ACAAA_Nel3 0 0 0 1 1 0 1
## sample_ACAGTG_Nel5 0 0 0 1 NA NA NA
## sample_AGCAT_Nel8 0 0 0 1 0 0 1
## sample_ATGAAAC_Nel10 0 0 0 1 0 0 1
## sample_ATGAAAC_Nel15 0 0 0 1 0 0 1
## sample_CGATGT_Nel4 0 0 0 1 0 0 1
## [,1922] [,1923] [,1924] [,1925] [,1926] [,1927] [,1928]
## sample_ACAAA_Nel3 0 1 0 NA NA NA NA
## sample_ACAGTG_Nel5 0 1 NA 0 0 0 0
## sample_AGCAT_Nel8 NA NA NA NA NA NA NA
## sample_ATGAAAC_Nel10 0 1 NA 0 0 0 0
## sample_ATGAAAC_Nel15 NA NA 0 0 0 0 0
## sample_CGATGT_Nel4 NA NA 0 NA NA NA NA
## [,1929]
## sample_ACAAA_Nel3 NA
## sample_ACAGTG_Nel5 0
## sample_AGCAT_Nel8 NA
## sample_ATGAAAC_Nel10 0
## sample_ATGAAAC_Nel15 0
## sample_CGATGT_Nel4 NAThe individual samples are called things like “Nel3” and “Cau10”. The numbers are ID numbers of individuals birds that DNA was collected from, and the letters are the populations.
I can use regular expressions (in this case a function called
gsub()) to remove the stuff like “sample_ACAAA_” before the
things I want. First I’ll remove the “sample_” (don’t worry about the
exact details of how the function works).
# add gsub() to before ("sample_","",row_names)
row_names02 <- gsub("sample_","",row_names)
# look at the output using head()
head(row_names02)## [1] "1" "1" "0" "0" "0" "0"Now I’ll get rid of the As, Cs, Ts and Gs (not yet sure what those
are actually…). This gives me a unique combination of a population code
and number for each sample. (Again, we won’t worry about the code
withing gsub()).
# clean up the character data
sample_id <- gsub("^([ATCG]*)(_)(.*)",
"\\3",
row_names02)
# look at thee output
head(sample_id)## [1] "1" "1" "0" "0" "0" "0"Now I want a vector just with the population code, so I’ll use
gsub() to get rid of the numbers. (Again, don’t worry about
the details of what’s in gsub().)
# add gsub() before the stuff in the parentheses
pop_id <- gsub("[01-9]*", # TODO
"",
sample_id)The function table() summarizes the output for me
# call table() on pop_id
table(pop_id) # TODO## pop_id
##
## 123045Back to the issue of the number of rows with >50% NAs
As noted above, the authors say they removed 6 rows because of NAs, but I only got 4. Its actually pretty common for things reported in a paper to diverge from what you’re able to replicate from the data - somewhere, something minor got misreported or left off of a file. But I do always like to try to figure out what’s going on.
The author’s state:
“We obtained blood samples from 75 Ammodramus sparrows … 15 from each of five putative subspecies. … Due to missing data, we removed six individuals (four of which were from [the subspecies] subvirgatus ), resulting in the analysis of 69 individuals (11–15 individuals per population).
Now that I’ve extracted the information on the samples I can see what samples they provided in their data.
Again, I can summarize the vector of population names with
table().
length(pop_id)## [1] 138888table(pop_id)## pop_id
##
## 123045Right away I can see I have only 72 samples versus their 75, so 3 are missing. There’s also only 13 in the “Cau” category and 1 in “Sub”. So the .vcf file they provided is either missing a few birds, or something is happening when vcfR loads to kick out some rows, perhaps due to data quality. I could open up the vcfR file in a text editor to check this out if I wanted.
When locating rows with NAs I created a vector where there were >50% NAs:
i_NA_50percent## [1] 37 39 41 53I can compare this to my vector of population IDs using brackets:
sample_id[i_NA_50percent]## [1] NA NA NA NAIn the paper they say of the six samples they removed, “four of which were from [the subspecies] subvirgatus”. I have 3 samples called “Sub”, which are probably 3 of those 4 samples, and one “Cau.”
In total, I’m missing 1 Sub with >50% missing data, 1 Cau with >50% missing data, and 1 Cau with <50% missing data. I’m not sure what’s going on, but I doubt this will impact the analysis.