Baseline characteristics
PAM122121WPAM %>%
dplyr::select(AGE50, GENDERF, type_of_inflammatory, ModSevere, pamtotal, PAMlevel, SESIBD, PROImp) -> baseline
baseline %>% tbl_summary(label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease", pamtotal ~ "Total PAM Score", PAMlevel ~"PAM Level", SESIBD ~ "SES Score", PROImp ~ "Daily Impact Score"),
statistic = list(all_continuous() ~ "{mean} ({sd})"),
missing_text = "(Missing)")
ℹ Column(s) PAMlevel are class "haven_labelled". This is an intermediate datastructure not meant for analysis. Convert columns with `haven::as_factor()`, `labelled::to_factor()`, `labelled::unlabelled()`, and `unclass()`. "haven_labelled" value labels are ignored when columns are not converted. Failure to convert may have unintended consequences or result in error.
• https://haven.tidyverse.org/articles/semantics.html
•
https://larmarange.github.io/labelled/articles/intro_labelled.html#unlabelled
| Characteristic |
N = 160 |
| Age > 50 |
82 (51%) |
| Female |
86 (54%) |
| IBD Diagnosis |
|
| 1 |
59 (37%) |
| 2 |
93 (58%) |
| 3 |
3 (1.9%) |
| 4 |
5 (3.1%) |
| Moderate to Severe Disease |
121 (76%) |
| Total PAM Score |
65 (11) |
| (Missing) |
12 |
| PAM Level |
|
| 1 |
8 (5.4%) |
| 2 |
17 (11%) |
| 3 |
87 (59%) |
| 4 |
31 (21%) |
| 5 |
5 (3.4%) |
| (Missing) |
12 |
| SES Score |
218 (40) |
| Daily Impact Score |
7 (8) |
Baseline Characteristics by PAM level
baseline %>% tbl_summary(by = PAMlevel,
label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease", pamtotal ~ "Total PAM Score", PAMlevel ~"PAM Level", SESIBD ~ "SES Score", PROImp ~ "Daily Impact Score"),
statistic = list(all_continuous() ~ "{mean} ({sd})"),
missing_text = "(Missing)") %>% add_p()
12 observations missing `PAMlevel` have been removed. To include these observations, use `forcats::fct_explicit_na()` on `PAMlevel` column before passing to `tbl_summary()`.
ℹ Column(s) PAMlevel are class "haven_labelled". This is an intermediate datastructure not meant for analysis. Convert columns with `haven::as_factor()`, `labelled::to_factor()`, `labelled::unlabelled()`, and `unclass()`. "haven_labelled" value labels are ignored when columns are not converted. Failure to convert may have unintended consequences or result in error.
• https://haven.tidyverse.org/articles/semantics.html
•
https://larmarange.github.io/labelled/articles/intro_labelled.html#unlabelled
| Characteristic |
1, N = 8 |
2, N = 17 |
3, N = 87 |
4, N = 31 |
5, N = 5 |
p-value |
| Age > 50 |
6 (75%) |
12 (71%) |
44 (51%) |
13 (42%) |
3 (60%) |
0.3 |
| Female |
5 (62%) |
9 (53%) |
48 (55%) |
16 (52%) |
2 (40%) |
>0.9 |
| IBD Diagnosis |
|
|
|
|
|
0.9 |
| 1 |
3 (38%) |
5 (29%) |
33 (38%) |
10 (32%) |
3 (60%) |
|
| 2 |
5 (62%) |
12 (71%) |
49 (56%) |
18 (58%) |
2 (40%) |
|
| 3 |
0 (0%) |
0 (0%) |
1 (1.1%) |
2 (6.5%) |
0 (0%) |
|
| 4 |
0 (0%) |
0 (0%) |
4 (4.6%) |
1 (3.2%) |
0 (0%) |
|
| Moderate to Severe Disease |
5 (62%) |
15 (88%) |
66 (76%) |
23 (74%) |
3 (60%) |
0.5 |
| Total PAM Score |
46 (1) |
52 (2) |
64 (5) |
81 (6) |
51 (0) |
<0.001 |
| SES Score |
184 (58) |
205 (48) |
214 (35) |
244 (31) |
216 (42) |
<0.001 |
| Daily Impact Score |
9 (12) |
11 (10) |
7 (9) |
3 (4) |
10 (14) |
0.3 |
Bivariate Analysis
tbl_uv_proimp <-
tbl_uvregression(
PAM122121WPAM[c("PROImp", "AGE50", "GENDERF", "type_of_inflammatory", "ModSevere", "pamtotal", "PAMlevel", "SESIBD")],
method = lm,
y = PROImp,
label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease", pamtotal ~ "Total PAM Score", PAMlevel ~"PAM Level", SESIBD ~ "SES Score")
)
ℹ Column(s) PAMlevel are class "haven_labelled". This is an intermediate datastructure not meant for analysis. Convert columns with `haven::as_factor()`, `labelled::to_factor()`, `labelled::unlabelled()`, and `unclass()`. "haven_labelled" value labels are ignored when columns are not converted. Failure to convert may have unintended consequences or result in error.
• https://haven.tidyverse.org/articles/semantics.html
•
https://larmarange.github.io/labelled/articles/intro_labelled.html#unlabelled
print(tbl_uv_proimp, method = render)
`...` must be empty.
✖ Problematic argument:
• method = render
| Characteristic |
N |
Beta |
95% CI |
p-value |
| Age > 50 |
160 |
0.78 |
-1.8, 3.4 |
0.6 |
| Female |
160 |
3.1 |
0.54, 5.7 |
0.018 |
| IBD Diagnosis |
160 |
2.4 |
0.45, 4.4 |
0.016 |
| Moderate to Severe Disease |
160 |
3.8 |
0.83, 6.8 |
0.013 |
| Total PAM Score |
148 |
-0.18 |
-0.30, -0.06 |
0.005 |
| PAM Level |
148 |
-1.8 |
-3.5, -0.13 |
0.035 |
| SES Score |
160 |
-0.12 |
-0.15, -0.09 |
<0.001 |
NULL
Multivariable Models
include pmatotal and SESIBD
impact1 <- lm(PROImp ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + pamtotal + SESIBD,
data = PAM122121WPAM)
summary(impact1 )
Call:
lm(formula = PROImp ~ AGE50 + GENDERF + type_of_inflammatory +
ModSevere + pamtotal + SESIBD, data = PAM122121WPAM)
Residuals:
Min 1Q Median 3Q Max
-16.5831 -4.2939 -0.7563 3.4230 23.7530
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 27.5213660 4.7923101 5.743 5.50e-08 ***
AGE50 0.6506892 1.1993602 0.543 0.5883
GENDERF 2.1853227 1.1709833 1.866 0.0641 .
type_of_inflammatory 1.1173501 0.8913475 1.254 0.2121
ModSevere 1.8077745 1.4012286 1.290 0.1991
pamtotal -0.0005061 0.0578050 -0.009 0.9930
SESIBD -0.1165822 0.0161908 -7.201 3.28e-11 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 7.017 on 141 degrees of freedom
(12 observations deleted due to missingness)
Multiple R-squared: 0.3653, Adjusted R-squared: 0.3383
F-statistic: 13.53 on 6 and 141 DF, p-value: 4.363e-12
broom::glance(impact1 )
broom::tidy(impact1)
tbl_regression(impact1, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease", pamtotal ~ "Total PAM Score"))
| Characteristic |
Beta |
95% CI |
p-value |
| Age > 50 |
0.65 |
-1.7, 3.0 |
0.6 |
| Female |
2.2 |
-0.13, 4.5 |
0.064 |
| IBD Diagnosis |
1.1 |
-0.64, 2.9 |
0.2 |
| Moderate to Severe Disease |
1.8 |
-0.96, 4.6 |
0.2 |
| Total PAM Score |
0.00 |
-0.11, 0.11 |
>0.9 |
| SESIBD |
-0.12 |
-0.15, -0.08 |
<0.001 |
# Model performance
model_performance(impact1)
# Indices of model performance
AIC | BIC | R2 | R2 (adj.) | RMSE | Sigma
-------------------------------------------------------
1005.560 | 1029.537 | 0.365 | 0.338 | 6.849 | 7.017
performance::check_model(impact1, panel = TRUE)

# Margins
cplot(impact1, "pamtotal", what = "prediction", main = "Predicted Daily Impact Given PAM")

Drop SESIBD
impact2 <- lm(PROImp ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + pamtotal,
data = PAM122121WPAM)
summary(impact2 )
Call:
lm(formula = PROImp ~ AGE50 + GENDERF + type_of_inflammatory +
ModSevere + pamtotal, data = PAM122121WPAM)
Residuals:
Min 1Q Median 3Q Max
-12.366 -5.444 -1.890 3.438 28.509
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 10.44525 4.85305 2.152 0.03306 *
AGE50 0.74050 1.39762 0.530 0.59706
GENDERF 2.50521 1.36364 1.837 0.06828 .
type_of_inflammatory 1.85286 1.03190 1.796 0.07469 .
ModSevere 3.13103 1.61884 1.934 0.05509 .
pamtotal -0.16691 0.06175 -2.703 0.00771 **
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 8.178 on 142 degrees of freedom
(12 observations deleted due to missingness)
Multiple R-squared: 0.132, Adjusted R-squared: 0.1014
F-statistic: 4.317 on 5 and 142 DF, p-value: 0.001096
broom::glance(impact2 )
broom::tidy(impact2)
tbl_regression(impact2, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease", pamtotal ~ "Total PAM Score"))
| Characteristic |
Beta |
95% CI |
p-value |
| Age > 50 |
0.74 |
-2.0, 3.5 |
0.6 |
| Female |
2.5 |
-0.19, 5.2 |
0.068 |
| IBD Diagnosis |
1.9 |
-0.19, 3.9 |
0.075 |
| Moderate to Severe Disease |
3.1 |
-0.07, 6.3 |
0.055 |
| Total PAM Score |
-0.17 |
-0.29, -0.04 |
0.008 |
# Model performance
model_performance(impact2)
# Indices of model performance
AIC | BIC | R2 | R2 (adj.) | RMSE | Sigma
-------------------------------------------------------
1049.904 | 1070.885 | 0.132 | 0.101 | 8.010 | 8.178
performance::check_model(impact2, panel = TRUE)

# Margins
cplot(impact2, "pamtotal", what = "prediction", main = "Predicted Daily Impact Given PAM")

Drop pam total
impact3 <- lm(PROImp ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + SESIBD,
data = PAM122121WPAM)
summary(impact3 )
Call:
lm(formula = PROImp ~ AGE50 + GENDERF + type_of_inflammatory +
ModSevere + SESIBD, data = PAM122121WPAM)
Residuals:
Min 1Q Median 3Q Max
-15.8519 -4.4527 -0.8323 3.2992 24.1658
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 26.14610 3.97198 6.583 6.86e-10 ***
AGE50 0.70156 1.12063 0.626 0.5322
GENDERF 2.09242 1.10672 1.891 0.0605 .
type_of_inflammatory 1.19228 0.85532 1.394 0.1653
ModSevere 1.64137 1.32960 1.234 0.2189
SESIBD -0.11134 0.01414 -7.876 5.66e-13 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 6.859 on 154 degrees of freedom
Multiple R-squared: 0.3548, Adjusted R-squared: 0.3338
F-statistic: 16.93 on 5 and 154 DF, p-value: 2.543e-13
broom::glance(impact3 )
broom::tidy(impact3)
tbl_regression(impact3, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease"))
| Characteristic |
Beta |
95% CI |
p-value |
| Age > 50 |
0.70 |
-1.5, 2.9 |
0.5 |
| Female |
2.1 |
-0.09, 4.3 |
0.061 |
| IBD Diagnosis |
1.2 |
-0.50, 2.9 |
0.2 |
| Moderate to Severe Disease |
1.6 |
-0.99, 4.3 |
0.2 |
| SESIBD |
-0.11 |
-0.14, -0.08 |
<0.001 |
# Model performance
model_performance(impact3)
# Indices of model performance
AIC | BIC | R2 | R2 (adj.) | RMSE | Sigma
-------------------------------------------------------
1078.129 | 1099.655 | 0.355 | 0.334 | 6.729 | 6.859
performance::check_model(impact3, panel = TRUE)

# Margins
cplot(impact3, "SESIBD", what = "prediction", main = "Predicted Daily Impact Given SES")

Interaction between SES and PAM
impact3 <- lm(PROImp ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + SESIBD*pamtotal,
data = PAM122121WPAM)
summary(impact3 )
Call:
lm(formula = PROImp ~ AGE50 + GENDERF + type_of_inflammatory +
ModSevere + SESIBD * pamtotal, data = PAM122121WPAM)
Residuals:
Min 1Q Median 3Q Max
-16.9477 -4.1917 -0.9806 3.9010 23.9114
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 45.570718 17.482463 2.607 0.0101 *
AGE50 0.625538 1.198941 0.522 0.6027
GENDERF 2.035045 1.178693 1.727 0.0865 .
type_of_inflammatory 1.248782 0.899240 1.389 0.1671
ModSevere 1.991390 1.410878 1.411 0.1603
SESIBD -0.196053 0.075777 -2.587 0.0107 *
pamtotal -0.302189 0.286904 -1.053 0.2940
SESIBD:pamtotal 0.001297 0.001208 1.074 0.2849
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 7.014 on 140 degrees of freedom
(12 observations deleted due to missingness)
Multiple R-squared: 0.3705, Adjusted R-squared: 0.339
F-statistic: 11.77 on 7 and 140 DF, p-value: 9.891e-12
broom::glance(impact3 )
broom::tidy(impact3)
tbl_regression(impact3, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease"))
| Characteristic |
Beta |
95% CI |
p-value |
| Age > 50 |
0.63 |
-1.7, 3.0 |
0.6 |
| Female |
2.0 |
-0.30, 4.4 |
0.086 |
| IBD Diagnosis |
1.2 |
-0.53, 3.0 |
0.2 |
| Moderate to Severe Disease |
2.0 |
-0.80, 4.8 |
0.2 |
| SESIBD |
-0.20 |
-0.35, -0.05 |
0.011 |
| PAM total |
-0.30 |
-0.87, 0.27 |
0.3 |
| SESIBD * PAM total |
0.00 |
0.00, 0.00 |
0.3 |
# Model performance
model_performance(impact3)
# Indices of model performance
AIC | BIC | R2 | R2 (adj.) | RMSE | Sigma
-------------------------------------------------------
1006.346 | 1033.321 | 0.371 | 0.339 | 6.821 | 7.014
performance::check_model(impact3, panel = TRUE)

# Margins
cplot(impact3, "SESIBD", what = "prediction", main = "Predicted Daily Impact Given SES")

cplot(impact3, "pamtotal", what = "prediction", main = "Predicted Daily Impact Given PAM")

PAM levels
impact4 <- lm(PROImp ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + PAMlevel + SESIBD,
data = PAM122121WPAM)
summary(impact4 )
Call:
lm(formula = PROImp ~ AGE50 + GENDERF + type_of_inflammatory +
ModSevere + PAMlevel + SESIBD, data = PAM122121WPAM)
Residuals:
Min 1Q Median 3Q Max
-16.6964 -4.3548 -0.8893 3.2901 23.6914
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 27.18922 4.35644 6.241 4.78e-09 ***
AGE50 0.69360 1.19924 0.578 0.564
GENDERF 2.19526 1.17143 1.874 0.063 .
type_of_inflammatory 1.10694 0.89025 1.243 0.216
ModSevere 1.81437 1.39983 1.296 0.197
PAMlevel 0.18263 0.75249 0.243 0.809
SESIBD -0.11784 0.01564 -7.535 5.37e-12 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 7.016 on 141 degrees of freedom
(12 observations deleted due to missingness)
Multiple R-squared: 0.3656, Adjusted R-squared: 0.3386
F-statistic: 13.54 on 6 and 141 DF, p-value: 4.242e-12
broom::glance(impact4 )
broom::tidy(impact4)
tbl_regression(impact4, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease"))
| Characteristic |
Beta |
95% CI |
p-value |
| Age > 50 |
0.69 |
-1.7, 3.1 |
0.6 |
| Female |
2.2 |
-0.12, 4.5 |
0.063 |
| IBD Diagnosis |
1.1 |
-0.65, 2.9 |
0.2 |
| Moderate to Severe Disease |
1.8 |
-0.95, 4.6 |
0.2 |
| PAM level |
0.18 |
-1.3, 1.7 |
0.8 |
| SESIBD |
-0.12 |
-0.15, -0.09 |
<0.001 |
# Model performance
model_performance(impact4)
# Indices of model performance
AIC | BIC | R2 | R2 (adj.) | RMSE | Sigma
-------------------------------------------------------
1005.498 | 1029.476 | 0.366 | 0.339 | 6.848 | 7.016
performance::check_model(impact4, panel = TRUE)

# Margins
cplot(impact4, "PAMlevel", what = "prediction", main = "Predicted Daily Impact Given PAM")

PAM levels drop SES
impact5 <- lm(PROImp ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + PAMlevel,
data = PAM122121WPAM)
summary(impact5 )
Call:
lm(formula = PROImp ~ AGE50 + GENDERF + type_of_inflammatory +
ModSevere + PAMlevel, data = PAM122121WPAM)
Residuals:
Min 1Q Median 3Q Max
-11.490 -5.483 -2.108 3.518 28.534
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 4.3584 3.6940 1.180 0.2400
AGE50 0.9137 1.4149 0.646 0.5194
GENDERF 2.4148 1.3820 1.747 0.0828 .
type_of_inflammatory 1.8220 1.0447 1.744 0.0833 .
ModSevere 3.3777 1.6338 2.067 0.0405 *
PAMlevel -1.6093 0.8425 -1.910 0.0581 .
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 8.28 on 142 degrees of freedom
(12 observations deleted due to missingness)
Multiple R-squared: 0.1101, Adjusted R-squared: 0.07882
F-statistic: 3.515 on 5 and 142 DF, p-value: 0.005012
broom::glance(impact5 )
broom::tidy(impact5)
tbl_regression(impact5, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease"))
| Characteristic |
Beta |
95% CI |
p-value |
| Age > 50 |
0.91 |
-1.9, 3.7 |
0.5 |
| Female |
2.4 |
-0.32, 5.1 |
0.083 |
| IBD Diagnosis |
1.8 |
-0.24, 3.9 |
0.083 |
| Moderate to Severe Disease |
3.4 |
0.15, 6.6 |
0.041 |
| PAM level |
-1.6 |
-3.3, 0.06 |
0.058 |
# Model performance
model_performance(impact5)
# Indices of model performance
AIC | BIC | R2 | R2 (adj.) | RMSE | Sigma
-------------------------------------------------------
1053.576 | 1074.557 | 0.110 | 0.079 | 8.110 | 8.280
performance::check_model(impact5, panel = TRUE)

# Margins
cplot(impact5, "PAMlevel", what = "prediction", main = "Predicted Daily Impact Given PAM")

PAM levels interaction with SES
impact6 <- lm(PROImp ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + PAMlevel*SESIBD,
data = PAM122121WPAM)
summary(impact6 )
Call:
lm(formula = PROImp ~ AGE50 + GENDERF + type_of_inflammatory +
ModSevere + PAMlevel * SESIBD, data = PAM122121WPAM)
Residuals:
Min 1Q Median 3Q Max
-16.5017 -4.4187 -0.8226 3.4573 23.7747
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 31.285407 9.697131 3.226 0.00156 **
AGE50 0.707964 1.202937 0.589 0.55713
GENDERF 2.172187 1.175680 1.848 0.06677 .
type_of_inflammatory 1.159323 0.899553 1.289 0.19960
ModSevere 1.894492 1.413881 1.340 0.18244
PAMlevel -1.350231 3.326466 -0.406 0.68543
SESIBD -0.137995 0.045397 -3.040 0.00283 **
PAMlevel:SESIBD 0.007148 0.015107 0.473 0.63685
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 7.035 on 140 degrees of freedom
(12 observations deleted due to missingness)
Multiple R-squared: 0.3666, Adjusted R-squared: 0.3349
F-statistic: 11.58 on 7 and 140 DF, p-value: 1.486e-11
broom::glance(impact6 )
broom::tidy(impact6)
tbl_regression(impact6, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease"))
| Characteristic |
Beta |
95% CI |
p-value |
| Age > 50 |
0.71 |
-1.7, 3.1 |
0.6 |
| Female |
2.2 |
-0.15, 4.5 |
0.067 |
| IBD Diagnosis |
1.2 |
-0.62, 2.9 |
0.2 |
| Moderate to Severe Disease |
1.9 |
-0.90, 4.7 |
0.2 |
| PAM level |
-1.4 |
-7.9, 5.2 |
0.7 |
| SESIBD |
-0.14 |
-0.23, -0.05 |
0.003 |
| PAM level * SESIBD |
0.01 |
-0.02, 0.04 |
0.6 |
# Model performance
model_performance(impact6)
# Indices of model performance
AIC | BIC | R2 | R2 (adj.) | RMSE | Sigma
-------------------------------------------------------
1007.261 | 1034.236 | 0.367 | 0.335 | 6.843 | 7.035
performance::check_model(impact6, panel = TRUE)

# Margins
cplot(impact6, "PAMlevel", what = "prediction", main = "Predicted Daily Impact Given PAM")

cplot(impact6, "SESIBD", what = "prediction", main = "Predicted Daily Impact Given SES")
Error: variable 'PAMlevel' was fitted with type "numeric" but type "factor" was supplied
---
title: "PAM"
output: 
  html_notebook:
   themes: paper
   toc: yes
   toc_float: yes
editor_options: 
  chunk_output_type: inline
date: "2022-11-17"
---
# Load packages 
```{r}
library(tidyverse)
library(broom) 
library(performance)
library(gt)
library(gtsummary)
library(janitor)
library(forcats)
library(here)
library(margins)
library(ggplot2)
library(mediation)
```

# Import Data 
```{r}

View(PAM122121WPAM)

```

# Baseline characteristics 
```{r}
PAM122121WPAM %>% 
  dplyr::select(AGE50, GENDERF, type_of_inflammatory, ModSevere, pamtotal, PAMlevel, SESIBD, PROImp) -> baseline

baseline %>% tbl_summary(label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease", pamtotal ~ "Total PAM Score", PAMlevel ~"PAM Level", SESIBD ~ "SES Score", PROImp ~ "Daily Impact Score"),
        statistic = list(all_continuous() ~ "{mean} ({sd})"),
        missing_text = "(Missing)")
```

# Baseline Characteristics by PAM level 
```{r}
baseline %>% tbl_summary(by = PAMlevel,
         label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease", pamtotal ~ "Total PAM Score", PAMlevel ~"PAM Level", SESIBD ~ "SES Score", PROImp ~ "Daily Impact Score"),
        statistic = list(all_continuous() ~ "{mean} ({sd})"),
        missing_text = "(Missing)") %>% add_p()
```

# Bivariate Analysis 
```{r}
tbl_uv_proimp <- 
  tbl_uvregression(
    PAM122121WPAM[c("PROImp", "AGE50", "GENDERF", "type_of_inflammatory", "ModSevere", "pamtotal", "PAMlevel", "SESIBD")],
    method = lm,
    y = PROImp,
    label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease", pamtotal ~ "Total PAM Score", PAMlevel ~"PAM Level", SESIBD ~ "SES Score")
  )
print(tbl_uv_proimp, method = render)
```

# Multivariable Models {.tabset}
## include pmatotal and SESIBD 
```{r}
impact1 <- lm(PROImp ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + pamtotal + SESIBD,
              data = PAM122121WPAM)
summary(impact1 )
broom::glance(impact1 )
broom::tidy(impact1)
tbl_regression(impact1, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease", pamtotal ~ "Total PAM Score"))

# Model performance 
model_performance(impact1)
performance::check_model(impact1, panel = TRUE)

# Margins 
cplot(impact1, "pamtotal", what = "prediction", main = "Predicted Daily Impact Given PAM")
```


## Drop SESIBD 
```{r}
impact2 <- lm(PROImp ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + pamtotal,
              data = PAM122121WPAM)
summary(impact2 )
broom::glance(impact2 )
broom::tidy(impact2)
tbl_regression(impact2, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease", pamtotal ~ "Total PAM Score"))

# Model performance 
model_performance(impact2)
performance::check_model(impact2, panel = TRUE)

# Margins 
cplot(impact2, "pamtotal", what = "prediction", main = "Predicted Daily Impact Given PAM")
```

## Drop pam total 
```{r}
impact3 <- lm(PROImp ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + SESIBD,
              data = PAM122121WPAM)
summary(impact3 )
broom::glance(impact3 )
broom::tidy(impact3)
tbl_regression(impact3, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease"))

# Model performance 
model_performance(impact3)
performance::check_model(impact3, panel = TRUE)

# Margins 
cplot(impact3, "SESIBD", what = "prediction", main = "Predicted Daily Impact Given SES")
```

## Interaction between SES and PAM 
```{r}
impact3 <- lm(PROImp ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + SESIBD*pamtotal,
              data = PAM122121WPAM)
summary(impact3 )
broom::glance(impact3 )
broom::tidy(impact3)
tbl_regression(impact3, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease"))

# Model performance 
model_performance(impact3)
performance::check_model(impact3, panel = TRUE)

# Margins 
cplot(impact3, "SESIBD", what = "prediction", main = "Predicted Daily Impact Given SES")
cplot(impact3, "pamtotal", what = "prediction", main = "Predicted Daily Impact Given PAM")
```

## PAM levels 
```{r}
impact4 <- lm(PROImp ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + PAMlevel + SESIBD,
              data = PAM122121WPAM)
summary(impact4 )
broom::glance(impact4 )
broom::tidy(impact4)
tbl_regression(impact4, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease"))

# Model performance 
model_performance(impact4)
performance::check_model(impact4, panel = TRUE)

# Margins 
cplot(impact4, "PAMlevel", what = "prediction", main = "Predicted Daily Impact Given PAM")
```

## PAM levels drop SES 
```{r}
impact5 <- lm(PROImp ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + PAMlevel,
              data = PAM122121WPAM)
summary(impact5 )
broom::glance(impact5 )
broom::tidy(impact5)
tbl_regression(impact5, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease"))

# Model performance 
model_performance(impact5)
performance::check_model(impact5, panel = TRUE)

# Margins 
cplot(impact5, "PAMlevel", what = "prediction", main = "Predicted Daily Impact Given PAM")
```

## PAM levels interaction with SES 
```{r}
impact6 <- lm(PROImp ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + PAMlevel*SESIBD,
              data = PAM122121WPAM)
summary(impact6 )
broom::glance(impact6 )
broom::tidy(impact6)
tbl_regression(impact6, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease"))

# Model performance 
model_performance(impact6)
performance::check_model(impact6, panel = TRUE)

# Margins 
cplot(impact6, "PAMlevel", what = "prediction", main = "Predicted Daily Impact Given PAM")
```

# Mediation analysis 
```{r}
library(mediation)


# Step 2: Is there a relationship between the mediator (SVI) and race? Yes, patients with higher SVI were more likely to be black 
Impact_M <- lm(SESIBD ~ AGE50 + GENDERF + type_of_inflammatory + ModSevere + pamtotal + PROImp,
              data = PAM122121WPAM)
summary(Impact_M )
broom::glance(Impact_M )
tbl_regression(Impact_M, label = list(AGE50 ~ "Age > 50", GENDERF~ "Female", type_of_inflammatory ~ "IBD Diagnosis", ModSevere ~ "Moderate to Severe Disease"))

# Step 3: Mediation analysis
results <- mediate(Impact_M, impact1, treat="pamtotal", mediator="SESIBD",
                   boot=TRUE, sims=500)
summary(results)
```

