library(haven)
dd2=read_sav("C:/Users/binht/Dropbox/Hue/data/2022_data_consultant/2 dd2/R/spss_r.sav")
class(dd2)
## [1] "tbl_df"     "tbl"        "data.frame"
data.label.table <- attr(dd2, "label.table")
missings <- attr(dd2, "missings")
names(dd2)
##  [1] "MaID"    "NhomNC"  "A1"      "A2"      "A3"      "A4"      "A5"     
##  [8] "A6.1"    "A6.1_1"  "A6.2"    "A6.2_1"  "A6.3"    "A6.3_1"  "A7.1"   
## [15] "A7.1_1"  "A7.2"    "A7.2_1"  "A7.3"    "A8.1"    "A8.2"    "A8.3"   
## [22] "A8.3_31" "A8.3_32" "A8.4"    "B1"      "B2"      "B3"      "B4"     
## [29] "B5"      "B6"      "B7"      "B8"      "B9"      "B10"     "B11"    
## [36] "B12"     "B13"     "B14"     "B15"     "B16"     "B17"     "B18"    
## [43] "B19"     "B20"     "B21"     "B22"     "B23"     "B24"     "B25"    
## [50] "B26"     "B27"     "B28"     "B29"     "B30"     "B31"     "B32"    
## [57] "B33"     "B34"     "B35"     "B36"     "B37"     "B38"     "B39"    
## [64] "B40"     "B41"     "B42"     "TB1_5"   "TB6_12"  "TB13_18" "TB"     
## [71] "TB25_31" "TB32_42" "C0"      "C1"      "C2"      "C3.1"    "C3.2"   
## [78] "C3.3"    "C4"      "C5"      "C6"      "C7"      "C8"      "C9.1"   
## [85] "C9.2"    "C9.3"    "C9.4"    "C10.1"   "C10.2"   "C9"      "TB19_24"
library(compareGroups)
library(table1)
## 
## Attaching package: 'table1'
## The following objects are masked from 'package:base':
## 
##     units, units<-
dd2$NhomNC=as.factor(dd2$NhomNC)
dd2$C10.1=as.factor(dd2$C10.1)
dd2$A2=as.factor(dd2$A2)
dd2$A3=as.factor(dd2$A3)
dd2$A4=as.factor(dd2$A4)
dd2$A5=as.factor(dd2$A5)
dd2$A6.1=as.factor(dd2$A6.1)
dd2$A6.2=as.factor(dd2$A6.2)
dd2$A6.3=as.factor(dd2$A6.3)
dd2$A7.1=as.factor(dd2$A7.1)
dd2$A7.2=as.factor(dd2$A7.2)
dd2$A7.3=as.factor(dd2$A7.3)
dd2$A8.1=as.factor(dd2$A8.1)
dd2$A8.2=as.factor(dd2$A8.2)
dd2$A8.3=as.factor(dd2$A8.3)
dd2$A8.4=as.factor(dd2$A8.4)
dd2$C10.2=as.factor(dd2$C10.2)

0. Description

a0=table1(NhomNC~C10.1 + A2 + A3 +  A4  + A5 +  A6.1 +  A6.2 +  A6.3 +  A7.1  + A7.2 +  A7.3 +  A8.1 +  A8.2 +  A8.3 +  A8.4 +   C10.1  + C10.2  + A1 + TB1_5 +  TB6_12 +  TB13_18 +  TB +  TB25_31  + TB32_42  + TB19_24, data=dd2)
## Warning in table1.formula(NhomNC ~ C10.1 + A2 + A3 + A4 + A5 + A6.1 + A6.2 + :
## Unexpected LHS in formula ignored (table1 expects a 1-sided formula)
a0
Overall
(N=352)
NhomNC
1 142 (40.3%)
2 104 (29.5%)
3 106 (30.1%)
C10.1
0 111 (31.5%)
1 95 (27.0%)
Missing 146 (41.5%)
A2
1 2 (0.6%)
2 249 (70.7%)
3 10 (2.8%)
4 91 (25.9%)
A3
1 8 (2.3%)
2 330 (93.8%)
3 9 (2.6%)
4 3 (0.9%)
5 2 (0.6%)
A4
1 7 (2.0%)
2 96 (27.3%)
3 155 (44.0%)
4 1 (0.3%)
5 63 (17.9%)
6 10 (2.8%)
8 20 (5.7%)
A5
1 53 (15.1%)
2 48 (13.6%)
3 112 (31.8%)
4 139 (39.5%)
A6.1
1 13 (3.7%)
2 339 (96.3%)
A6.2
1 38 (10.8%)
2 314 (89.2%)
A6.3
1 11 (3.1%)
2 341 (96.9%)
A7.1
1 119 (33.8%)
2 233 (66.2%)
A7.2
1 83 (23.6%)
2 269 (76.4%)
A7.3
1 229 (65.1%)
2 13 (3.7%)
3 16 (4.5%)
4 10 (2.8%)
5 6 (1.7%)
6 9 (2.6%)
7 69 (19.6%)
A8.1
1 92 (26.1%)
2 38 (10.8%)
3 222 (63.1%)
A8.2
1 47 (13.4%)
2 13 (3.7%)
3 292 (83.0%)
A8.3
1 275 (78.1%)
2 9 (2.6%)
3 67 (19.0%)
Missing 1 (0.3%)
A8.4
1 125 (35.5%)
2 58 (16.5%)
3 169 (48.0%)
C10.2
0 139 (39.5%)
1 65 (18.5%)
Missing 148 (42.0%)
Tuoi
Mean (SD) 45.9 (9.77)
Median [Min, Max] 47.5 [2.00, 73.0]
Tong diem nhan thuc nhay cam
Mean (SD) 11.2 (5.42)
Median [Min, Max] 10.0 [5.00, 25.0]
Tong diem muc do nghiem trong
Mean (SD) 23.0 (7.00)
Median [Min, Max] 24.0 [7.00, 35.0]
Tong diem loi ich TKV
Mean (SD) 21.6 (8.13)
Median [Min, Max] 24.0 [6.00, 30.0]
Missing 1 (0.3%)
Tong diem rao can
Mean (SD) 12.8 (6.33)
Median [Min, Max] 12.0 [6.00, 30.0]
Tong diem dong luc TKV
Mean (SD) 27.5 (6.50)
Median [Min, Max] 28.0 [7.00, 35.0]
Tong diem hieu qua ban than
Mean (SD) 26.2 (13.6)
Median [Min, Max] 22.0 [11.0, 55.0]
Tong diem raocan TKV
Mean (SD) 12.9 (6.60)
Median [Min, Max] 12.0 [6.00, 48.0]

1. Regular BSE & Factors

t1=compareGroups(C10.1~NhomNC + A2 + A3 +  A4  + A5 +  A6.1 +  A6.2 +  A6.3 +  A7.1  + A7.2 +  A7.3 +  A8.1 +  A8.2 +  A8.3 +  A8.4 + C0+ C1+ C2 + C3.1 + C3.2 + C3.3 + C4 + C5 + C6 + C7 +C8 +C9.1+C9.2+C9.3+C9.4+C10.1+C10.2+C9+C10.1  + C10.2  + A1 + TB1_5 +  TB6_12 +  TB13_18 +  TB +  TB25_31  + TB32_42  + TB19_24 , data=dd2)
## Warning in compare.i(X[, i], y = y, selec.i = selec[i], method.i = method[i], :
## Some levels of 'A3' are removed since no observation in that/those levels
## Warning in compare.i(X[, i], y = y, selec.i = selec[i], method.i = method[i], :
## Some levels of 'A4' are removed since no observation in that/those levels
## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect
## Warning in compare.i(X[, i], y = y, selec.i = selec[i], method.i = method[i], :
## Some levels of 'C6' are removed since no observation in that/those levels
t1
## 
## 
## -------- Summary of results by groups of 'C10.1'---------
## 
## 
##    var                                                        N   p.value 
## 1  NhomNC                                                     206 <0.001**
## 2  A2                                                         206 0.770   
## 3  A3                                                         206 0.169   
## 4  A4                                                         206 0.405   
## 5  A5                                                         206 0.007** 
## 6  A6.1                                                       206 0.791   
## 7  A6.2                                                       206 0.396   
## 8  A6.3                                                       206 0.475   
## 9  A7.1                                                       206 0.001** 
## 10 A7.2                                                       206 0.003** 
## 11 A7.3                                                       206 0.001** 
## 12 A8.1                                                       206 0.030** 
## 13 A8.2                                                       206 0.225   
## 14 A8.3                                                       205 0.012** 
## 15 A8.4                                                       206 <0.001**
## 16 Thuc hanh TKV                                              206 <0.001**
## 17 Thoi gian th TKV                                           206 0.885   
## 18 Tu the coi ao boc lo nguc truoc guong hoac ke goi duoi vai 206 <0.001**
## 19 Quan sat hinh the                                          206 <0.001**
## 20 Quan sat da vung vu                                        206 0.002** 
## 21 Quan sat num vu                                            206 0.004** 
## 22 So sanh 2 vu                                               205 <0.001**
## 23 Danh gia thay doi huong num vu                             206 <0.001**
## 24 Chong tay quan sat                                          19 .       
## 25 Kiem tra tiet dich                                         206 <0.001**
## 26 Kham hach                                                  205 <0.001**
## 27 ep ngon tay de len mo vu                                   206 <0.001**
## 28 Luc de thay doi                                            206 <0.001**
## 29 Dùng tay T khám vú P và tay P khám vú T                    206 <0.001**
## 30 Xoay deu ko bo sot phan mo vu                              206 <0.001**
## 31 C10.1                                                      206 <0.001**
## 32 C10.2                                                      204 <0.001**
## 33 thuc hien so nan vu                                         11 .       
## 34 C10.1                                                      206 <0.001**
## 35 C10.2                                                      204 <0.001**
## 36 Tuoi                                                       206 0.606   
## 37 Tong diem nhan thuc nhay cam                               206 <0.001**
## 38 Tong diem muc do nghiem trong                              206 0.980   
## 39 Tong diem loi ich TKV                                      206 0.003** 
## 40 Tong diem rao can                                          206 <0.001**
## 41 Tong diem dong luc TKV                                     206 0.128   
## 42 Tong diem hieu qua ban than                                206 <0.001**
## 43 Tong diem raocan TKV                                       206 <0.001**
##    method            selection
## 1  categorical       ALL      
## 2  categorical       ALL      
## 3  categorical       ALL      
## 4  categorical       ALL      
## 5  categorical       ALL      
## 6  categorical       ALL      
## 7  categorical       ALL      
## 8  categorical       ALL      
## 9  categorical       ALL      
## 10 categorical       ALL      
## 11 categorical       ALL      
## 12 categorical       ALL      
## 13 categorical       ALL      
## 14 categorical       ALL      
## 15 categorical       ALL      
## 16 categorical       ALL      
## 17 categorical       ALL      
## 18 categorical       ALL      
## 19 categorical       ALL      
## 20 categorical       ALL      
## 21 categorical       ALL      
## 22 categorical       ALL      
## 23 categorical       ALL      
## 24 categorical       ALL      
## 25 categorical       ALL      
## 26 categorical       ALL      
## 27 categorical       ALL      
## 28 categorical       ALL      
## 29 categorical       ALL      
## 30 categorical       ALL      
## 31 categorical       ALL      
## 32 categorical       ALL      
## 33 categorical       ALL      
## 34 categorical       ALL      
## 35 categorical       ALL      
## 36 continuous normal ALL      
## 37 continuous normal ALL      
## 38 continuous normal ALL      
## 39 continuous normal ALL      
## 40 continuous normal ALL      
## 41 continuous normal ALL      
## 42 continuous normal ALL      
## 43 continuous normal ALL      
## -----
## Signif. codes:  0 '**' 0.05 '*' 0.1 ' ' 1
t1a0 <- createTable(t1,  hide.no = "no", show.n = TRUE)

print(t1a0)
## 
## --------Summary descriptives table by 'C10.1'---------
## 
## _________________________________________________________________________________________________ 
##                                                                  0           1      p.overall  N  
##                                                                N=111       N=95                   
## ¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯ 
## NhomNC:                                                                              <0.001   206 
##     1                                                       26 (23.4%)  49 (51.6%)                
##     2                                                       69 (62.2%)  24 (25.3%)                
##     3                                                       16 (14.4%)  22 (23.2%)                
## A2:                                                                                   0.770   206 
##     1                                                        1 (0.90%)   0 (0.00%)                
##     2                                                       82 (73.9%)  73 (76.8%)                
##     3                                                        2 (1.80%)   3 (3.16%)                
##     4                                                       26 (23.4%)  19 (20.0%)                
## A3:                                                                                   0.169   206 
##     1                                                        0 (0.00%)   1 (1.05%)                
##     2                                                       108 (97.3%) 89 (93.7%)                
##     3                                                        3 (2.70%)   2 (2.11%)                
##     4                                                        0 (0.00%)   3 (3.16%)                
## A4:                                                                                   0.405   206 
##     1                                                        2 (1.80%)   2 (2.11%)                
##     2                                                       27 (24.3%)  22 (23.2%)                
##     3                                                       51 (45.9%)  48 (50.5%)                
##     5                                                       19 (17.1%)  18 (18.9%)                
##     6                                                        2 (1.80%)   3 (3.16%)                
##     8                                                       10 (9.01%)   2 (2.11%)                
## A5:                                                                                   0.007   206 
##     1                                                       28 (25.2%)   8 (8.42%)                
##     2                                                       19 (17.1%)  13 (13.7%)                
##     3                                                       26 (23.4%)  34 (35.8%)                
##     4                                                       38 (34.2%)  40 (42.1%)                
## A6.1:                                                                                 0.791   206 
##     1                                                        5 (4.50%)   6 (6.32%)                
##     2                                                       106 (95.5%) 89 (93.7%)                
## A6.2:                                                                                 0.396   206 
##     1                                                       12 (10.8%)  15 (15.8%)                
##     2                                                       99 (89.2%)  80 (84.2%)                
## A6.3:                                                                                 0.475   206 
##     1                                                        3 (2.70%)   5 (5.26%)                
##     2                                                       108 (97.3%) 90 (94.7%)                
## A7.1:                                                                                 0.001   206 
##     1                                                       31 (27.9%)  49 (51.6%)                
##     2                                                       80 (72.1%)  46 (48.4%)                
## A7.2:                                                                                 0.003   206 
##     1                                                       24 (21.6%)  40 (42.1%)                
##     2                                                       87 (78.4%)  55 (57.9%)                
## A7.3:                                                                                 0.001   206 
##     1                                                       75 (67.6%)  40 (42.1%)                
##     2                                                        1 (0.90%)   5 (5.26%)                
##     3                                                        2 (1.80%)  10 (10.5%)                
##     4                                                        2 (1.80%)   5 (5.26%)                
##     5                                                        2 (1.80%)   2 (2.11%)                
##     6                                                        1 (0.90%)   5 (5.26%)                
##     7                                                       28 (25.2%)  28 (29.5%)                
## A8.1:                                                                                 0.030   206 
##     1                                                       25 (22.5%)  32 (33.7%)                
##     2                                                       11 (9.91%)  16 (16.8%)                
##     3                                                       75 (67.6%)  47 (49.5%)                
## A8.2:                                                                                 0.225   206 
##     1                                                       13 (11.7%)  19 (20.0%)                
##     2                                                        4 (3.60%)   4 (4.21%)                
##     3                                                       94 (84.7%)  72 (75.8%)                
## A8.3:                                                                                 0.012   205 
##     1                                                       94 (85.5%)  66 (69.5%)                
##     2                                                        3 (2.73%)   3 (3.16%)                
##     3                                                       13 (11.8%)  26 (27.4%)                
## A8.4:                                                                                <0.001   206 
##     1                                                       25 (22.5%)  47 (49.5%)                
##     2                                                       10 (9.01%)  19 (20.0%)                
##     3                                                       76 (68.5%)  29 (30.5%)                
## Thuc hanh TKV:                                                                       <0.001   206 
##     khong TKV                                               47 (42.3%)   0 (0.00%)                
##     co TKV                                                  64 (57.7%)   95 (100%)                
## Thoi gian th TKV:                                                                     0.885   206 
##     Không ?úng th?i ?i?m                                    85 (76.6%)  71 (74.7%)                
##     khám ?úng th?i ?i?m 7-10 ngay                           26 (23.4%)  24 (25.3%)                
## Tu the coi ao boc lo nguc truoc guong hoac ke goi duoi vai:                          <0.001   206 
##     khong                                                   69 (62.2%)  33 (34.7%)                
##     co                                                      42 (37.8%)  62 (65.3%)                
## Quan sat hinh the:                                                                   <0.001   206 
##     khong                                                   65 (58.6%)  29 (30.5%)                
##     co                                                      46 (41.4%)  66 (69.5%)                
## Quan sat da vung vu:                                                                  0.002   206 
##     khong                                                   64 (57.7%)  33 (34.7%)                
##     co                                                      47 (42.3%)  62 (65.3%)                
## Quan sat num vu:                                                                      0.004   206 
##     khong                                                   63 (56.8%)  34 (35.8%)                
##     co                                                      48 (43.2%)  61 (64.2%)                
## So sanh 2 vu:                                                                        <0.001   205 
##     Khong                                                   73 (65.8%)  17 (18.1%)                
##     Co                                                      38 (34.2%)  77 (81.9%)                
## Danh gia thay doi huong num vu:                                                      <0.001   206 
##     Khong                                                   98 (88.3%)  36 (37.9%)                
##     Co                                                      13 (11.7%)  59 (62.1%)                
## Chong tay quan sat: Co                                       7 (100%)    12 (100%)      .     19  
## Kiem tra tiet dich:                                                                  <0.001   206 
##     Khong                                                   93 (83.8%)  48 (50.5%)                
##     Co                                                      18 (16.2%)  47 (49.5%)                
## Kham hach:                                                                           <0.001   205 
##     khong                                                   97 (88.2%)  55 (57.9%)                
##     Co                                                      13 (11.8%)  40 (42.1%)                
## ep ngon tay de len mo vu:                                                            <0.001   206 
##     Khong                                                   96 (86.5%)  28 (29.5%)                
##     Co                                                      15 (13.5%)  67 (70.5%)                
## Luc de thay doi:                                                                     <0.001   206 
##     khong thay doi luc de                                   104 (93.7%) 28 (29.5%)                
##     co thay doi luc de                                       7 (6.31%)  67 (70.5%)                
## Dùng tay T khám vú P và tay P khám vú T:                                             <0.001   206 
##     khong dung tay nay kham vu kia                          77 (69.4%)  38 (40.0%)                
##     co dung tay nay kham vu kia                             34 (30.6%)  57 (60.0%)                
## Xoay deu ko bo sot phan mo vu:                                                       <0.001   206 
##     khong xoay deu cac mo vu                                100 (90.1%) 57 (60.0%)                
##     co xoay deu cac mo vu                                   11 (9.91%)  38 (40.0%)                
## C10.1:                                                                               <0.001   206 
##     0                                                       111 (100%)   0 (0.00%)                
##     1                                                        0 (0.00%)   95 (100%)                
## C10.2:                                                                               <0.001   204 
##     0                                                       109 (100%)  30 (31.6%)                
##     1                                                        0 (0.00%)  65 (68.4%)                
## thuc hien so nan vu:                                                                    .     11  
##     khong TH                                                 9 (81.8%)    0 (.%)                  
##     Co TH                                                    2 (18.2%)    0 (.%)                  
## C10.1:                                                                               <0.001   206 
##     0                                                       111 (100%)   0 (0.00%)                
##     1                                                        0 (0.00%)   95 (100%)                
## C10.2:                                                                               <0.001   204 
##     0                                                       109 (100%)  30 (31.6%)                
##     1                                                        0 (0.00%)  65 (68.4%)                
## Tuoi                                                        46.5 (9.64) 47.1 (8.41)   0.606   206 
## Tong diem nhan thuc nhay cam                                9.75 (5.27) 13.0 (5.52)  <0.001   206 
## Tong diem muc do nghiem trong                               22.8 (7.43) 22.9 (7.26)   0.980   206 
## Tong diem loi ich TKV                                       20.1 (9.89) 23.4 (5.59)   0.003   206 
## Tong diem rao can                                           10.9 (6.39) 14.1 (5.93)  <0.001   206 
## Tong diem dong luc TKV                                      27.0 (7.27) 28.4 (5.41)   0.128   206 
## Tong diem hieu qua ban than                                 22.1 (13.7) 30.6 (13.5)  <0.001   206 
## Tong diem raocan TKV                                        10.9 (6.39) 14.1 (5.93)  <0.001   206 
## ¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯

1. Doctors BSE & Factors

t1a=compareGroups(C10.2~C10.1+NhomNC + A2 + A3 +  A4  + A5 +  A6.1 +  A6.2 +  A6.3 +  A7.1  + A7.2 +  A7.3 +  A8.1 +  A8.2 +  A8.3 +  A8.4 +  C10.1  + C10.2  + A1 + TB1_5 +  TB6_12 +  TB13_18 +  TB +  TB25_31  + TB32_42  + TB19_24 , data=dd2)
## Warning in compare.i(X[, i], y = y, selec.i = selec[i], method.i = method[i], :
## Some levels of 'A3' are removed since no observation in that/those levels
## Warning in compare.i(X[, i], y = y, selec.i = selec[i], method.i = method[i], :
## Some levels of 'A4' are removed since no observation in that/those levels
## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect

## Warning in chisq.test(xx, correct = FALSE): Chi-squared approximation may be
## incorrect
t1a
## 
## 
## -------- Summary of results by groups of 'C10.2'---------
## 
## 
##    var                           N   p.value  method            selection
## 1  C10.1                         204 <0.001** categorical       ALL      
## 2  NhomNC                        204 0.001**  categorical       ALL      
## 3  A2                            204 0.757    categorical       ALL      
## 4  A3                            204 0.554    categorical       ALL      
## 5  A4                            204 0.485    categorical       ALL      
## 6  A5                            204 0.182    categorical       ALL      
## 7  A6.1                          204 0.746    categorical       ALL      
## 8  A6.2                          204 0.625    categorical       ALL      
## 9  A6.3                          204 0.269    categorical       ALL      
## 10 A7.1                          204 0.473    categorical       ALL      
## 11 A7.2                          204 0.078*   categorical       ALL      
## 12 A7.3                          204 0.058*   categorical       ALL      
## 13 A8.1                          204 0.106    categorical       ALL      
## 14 A8.2                          204 0.528    categorical       ALL      
## 15 A8.3                          203 0.003**  categorical       ALL      
## 16 A8.4                          204 0.007**  categorical       ALL      
## 17 C10.1                         204 <0.001** categorical       ALL      
## 18 C10.2                         204 <0.001** categorical       ALL      
## 19 Tuoi                          204 0.183    continuous normal ALL      
## 20 Tong diem nhan thuc nhay cam  204 0.102    continuous normal ALL      
## 21 Tong diem muc do nghiem trong 204 0.873    continuous normal ALL      
## 22 Tong diem loi ich TKV         204 0.045**  continuous normal ALL      
## 23 Tong diem rao can             204 <0.001** continuous normal ALL      
## 24 Tong diem dong luc TKV        204 0.210    continuous normal ALL      
## 25 Tong diem hieu qua ban than   204 <0.001** continuous normal ALL      
## 26 Tong diem raocan TKV          204 <0.001** continuous normal ALL      
## -----
## Signif. codes:  0 '**' 0.05 '*' 0.1 ' ' 1
t1a1=createTable(t1a)
print(t1a1)
## 
## --------Summary descriptives table by 'C10.2'---------
## 
## _______________________________________________________________ 
##                                    0           1      p.overall 
##                                  N=139       N=65               
## ¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯ 
## C10.1:                                                 <0.001   
##     0                         109 (78.4%)  0 (0.00%)            
##     1                         30 (21.6%)   65 (100%)            
## NhomNC:                                                 0.001   
##     1                         40 (28.8%)  33 (50.8%)            
##     2                         76 (54.7%)  17 (26.2%)            
##     3                         23 (16.5%)  15 (23.1%)            
## A2:                                                     0.757   
##     1                          1 (0.72%)   0 (0.00%)            
##     2                         102 (73.4%) 51 (78.5%)            
##     3                          3 (2.16%)   2 (3.08%)            
##     4                         33 (23.7%)  12 (18.5%)            
## A3:                                                     0.554   
##     1                          1 (0.72%)   0 (0.00%)            
##     2                         134 (96.4%) 61 (93.8%)            
##     3                          3 (2.16%)   2 (3.08%)            
##     4                          1 (0.72%)   2 (3.08%)            
## A4:                                                     0.485   
##     1                          3 (2.16%)   1 (1.54%)            
##     2                         35 (25.2%)  14 (21.5%)            
##     3                         60 (43.2%)  37 (56.9%)            
##     5                         28 (20.1%)   9 (13.8%)            
##     6                          3 (2.16%)   2 (3.08%)            
##     8                         10 (7.19%)   2 (3.08%)            
## A5:                                                     0.182   
##     1                         30 (21.6%)   6 (9.23%)            
##     2                         19 (13.7%)  11 (16.9%)            
##     3                         38 (27.3%)  22 (33.8%)            
##     4                         52 (37.4%)  26 (40.0%)            
## A6.1:                                                   0.746   
##     1                          7 (5.04%)   4 (6.15%)            
##     2                         132 (95.0%) 61 (93.8%)            
## A6.2:                                                   0.625   
##     1                         20 (14.4%)   7 (10.8%)            
##     2                         119 (85.6%) 58 (89.2%)            
## A6.3:                                                   0.269   
##     1                          4 (2.88%)   4 (6.15%)            
##     2                         135 (97.1%) 61 (93.8%)            
## A7.1:                                                   0.473   
##     1                         51 (36.7%)  28 (43.1%)            
##     2                         88 (63.3%)  37 (56.9%)            
## A7.2:                                                   0.078   
##     1                         37 (26.6%)  26 (40.0%)            
##     2                         102 (73.4%) 39 (60.0%)            
## A7.3:                                                   0.058   
##     1                         84 (60.4%)  30 (46.2%)            
##     2                          4 (2.88%)   2 (3.08%)            
##     3                          8 (5.76%)   4 (6.15%)            
##     4                          3 (2.16%)   4 (6.15%)            
##     5                          2 (1.44%)   2 (3.08%)            
##     6                          1 (0.72%)   5 (7.69%)            
##     7                         37 (26.6%)  18 (27.7%)            
## A8.1:                                                   0.106   
##     1                         33 (23.7%)  24 (36.9%)            
##     2                         17 (12.2%)   9 (13.8%)            
##     3                         89 (64.0%)  32 (49.2%)            
## A8.2:                                                   0.528   
##     1                         19 (13.7%)  13 (20.0%)            
##     2                          6 (4.32%)   2 (3.08%)            
##     3                         114 (82.0%) 50 (76.9%)            
## A8.3:                                                   0.003   
##     1                         117 (84.8%) 42 (64.6%)            
##     2                          4 (2.90%)   2 (3.08%)            
##     3                         17 (12.3%)  21 (32.3%)            
## A8.4:                                                   0.007   
##     1                         40 (28.8%)  30 (46.2%)            
##     2                         17 (12.2%)  12 (18.5%)            
##     3                         82 (59.0%)  23 (35.4%)            
## C10.1:                                                 <0.001   
##     0                         109 (78.4%)  0 (0.00%)            
##     1                         30 (21.6%)   65 (100%)            
## C10.2:                                                 <0.001   
##     0                         139 (100%)   0 (0.00%)            
##     1                          0 (0.00%)   65 (100%)            
## Tuoi                          46.1 (9.33) 47.9 (8.50)   0.183   
## Tong diem nhan thuc nhay cam  10.8 (5.63) 12.1 (5.47)   0.102   
## Tong diem muc do nghiem trong 22.9 (7.15) 22.7 (7.81)   0.873   
## Tong diem loi ich TKV         20.9 (9.20) 23.1 (5.96)   0.045   
## Tong diem rao can             11.2 (6.01) 14.9 (6.50)  <0.001   
## Tong diem dong luc TKV        27.4 (6.98) 28.5 (5.13)   0.210   
## Tong diem hieu qua ban than   23.5 (13.6) 31.5 (14.3)  <0.001   
## Tong diem raocan TKV          11.2 (6.01) 14.9 (6.50)  <0.001   
## ¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯

2. Factors and Group of study

t2=compareGroups(NhomNC~ A2 + A3 +  A4  + A5 +  A6.1 +  A6.2 +  A6.3 +  A7.1  + A7.2 +  A7.3 +  A8.1 +  A8.2 +  A8.3 +  A8.4 + C0+ C1+ C2 + C3.1 + C3.2 + C3.3 + C4 + C5 + C6 + C7 +C8 +C9.1+C9.2+C9.3+C9.4+C10.1+C10.2+C9+C10.1  + C10.2  + A1 + TB1_5 +  TB6_12 +  TB13_18 +  TB +  TB25_31  + TB32_42  + TB19_24 , data=dd2)
## Warning in compare.i(X[, i], y = y, selec.i = selec[i], method.i = method[i], :
## Some levels of 'C6' are removed since no observation in that/those levels
## Warning in cor(as.integer(x), as.integer(y)): the standard deviation is zero

## Warning in cor(as.integer(x), as.integer(y)): the standard deviation is zero
t2
## 
## 
## -------- Summary of results by groups of 'NhomNC'---------
## 
## 
##    var                                                        N   p.value 
## 1  A2                                                         352 0.668   
## 2  A3                                                         352 0.218   
## 3  A4                                                         352 .       
## 4  A5                                                         352 0.019** 
## 5  A6.1                                                       352 0.351   
## 6  A6.2                                                       352 0.507   
## 7  A6.3                                                       352 0.862   
## 8  A7.1                                                       352 <0.001**
## 9  A7.2                                                       352 0.013** 
## 10 A7.3                                                       352 .       
## 11 A8.1                                                       352 0.678   
## 12 A8.2                                                       352 0.931   
## 13 A8.3                                                       351 0.004** 
## 14 A8.4                                                       352 <0.001**
## 15 Thuc hanh TKV                                              352 0.039** 
## 16 Thoi gian th TKV                                           207 0.014** 
## 17 Tu the coi ao boc lo nguc truoc guong hoac ke goi duoi vai 207 <0.001**
## 18 Quan sat hinh the                                          207 <0.001**
## 19 Quan sat da vung vu                                        207 0.003** 
## 20 Quan sat num vu                                            207 0.004** 
## 21 So sanh 2 vu                                               206 <0.001**
## 22 Danh gia thay doi huong num vu                             207 0.009** 
## 23 Chong tay quan sat                                          20 .       
## 24 Kiem tra tiet dich                                         207 <0.001**
## 25 Kham hach                                                  206 0.011** 
## 26 ep ngon tay de len mo vu                                   206 <0.001**
## 27 Luc de thay doi                                            206 <0.001**
## 28 Dùng tay T khám vú P và tay P khám vú T                    206 <0.001**
## 29 Xoay deu ko bo sot phan mo vu                              206 <0.001**
## 30 C10.1                                                      206 <0.001**
## 31 C10.2                                                      204 0.001** 
## 32 thuc hien so nan vu                                         11 .       
## 33 C10.1                                                      206 <0.001**
## 34 C10.2                                                      204 0.001** 
## 35 Tuoi                                                       352 0.156   
## 36 Tong diem nhan thuc nhay cam                               352 <0.001**
## 37 Tong diem muc do nghiem trong                              352 0.003** 
## 38 Tong diem loi ich TKV                                      351 <0.001**
## 39 Tong diem rao can                                          352 <0.001**
## 40 Tong diem dong luc TKV                                     352 0.001** 
## 41 Tong diem hieu qua ban than                                352 <0.001**
## 42 Tong diem raocan TKV                                       352 <0.001**
##    method            selection
## 1  categorical       ALL      
## 2  categorical       ALL      
## 3  categorical       ALL      
## 4  categorical       ALL      
## 5  categorical       ALL      
## 6  categorical       ALL      
## 7  categorical       ALL      
## 8  categorical       ALL      
## 9  categorical       ALL      
## 10 categorical       ALL      
## 11 categorical       ALL      
## 12 categorical       ALL      
## 13 categorical       ALL      
## 14 categorical       ALL      
## 15 categorical       ALL      
## 16 categorical       ALL      
## 17 categorical       ALL      
## 18 categorical       ALL      
## 19 categorical       ALL      
## 20 categorical       ALL      
## 21 categorical       ALL      
## 22 categorical       ALL      
## 23 categorical       ALL      
## 24 categorical       ALL      
## 25 categorical       ALL      
## 26 categorical       ALL      
## 27 categorical       ALL      
## 28 categorical       ALL      
## 29 categorical       ALL      
## 30 categorical       ALL      
## 31 categorical       ALL      
## 32 categorical       ALL      
## 33 categorical       ALL      
## 34 categorical       ALL      
## 35 continuous normal ALL      
## 36 continuous normal ALL      
## 37 continuous normal ALL      
## 38 continuous normal ALL      
## 39 continuous normal ALL      
## 40 continuous normal ALL      
## 41 continuous normal ALL      
## 42 continuous normal ALL      
## -----
## Signif. codes:  0 '**' 0.05 '*' 0.1 ' ' 1
t2a=createTable(t2)
print(t2a)
## 
## --------Summary descriptives table by 'NhomNC'---------
## 
## _________________________________________________________________________________________________________ 
##                                                                  1           2           3      p.overall 
##                                                                N=142       N=104       N=106              
## ¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯ 
## A2:                                                                                               0.668   
##     1                                                        1 (0.70%)   0 (0.00%)   1 (0.94%)            
##     2                                                       95 (66.9%)  74 (71.2%)  80 (75.5%)            
##     3                                                        6 (4.23%)   2 (1.92%)   2 (1.89%)            
##     4                                                       40 (28.2%)  28 (26.9%)  23 (21.7%)            
## A3:                                                                                               0.218   
##     1                                                        5 (3.52%)   1 (0.96%)   2 (1.89%)            
##     2                                                       135 (95.1%) 98 (94.2%)  97 (91.5%)            
##     3                                                        1 (0.70%)   3 (2.88%)   5 (4.72%)            
##     4                                                        0 (0.00%)   2 (1.92%)   1 (0.94%)            
##     5                                                        1 (0.70%)   0 (0.00%)   1 (0.94%)            
## A4:                                                                                                 .     
##     1                                                        3 (2.11%)   1 (0.96%)   3 (2.83%)            
##     2                                                       43 (30.3%)  30 (28.8%)  23 (21.7%)            
##     3                                                       55 (38.7%)  52 (50.0%)  48 (45.3%)            
##     4                                                        1 (0.70%)   0 (0.00%)   0 (0.00%)            
##     5                                                       27 (19.0%)  12 (11.5%)  24 (22.6%)            
##     6                                                        8 (5.63%)   0 (0.00%)   2 (1.89%)            
##     8                                                        5 (3.52%)   9 (8.65%)   6 (5.66%)            
## A5:                                                                                               0.019   
##     1                                                       14 (9.86%)  25 (24.0%)  14 (13.2%)            
##     2                                                       23 (16.2%)  16 (15.4%)   9 (8.49%)            
##     3                                                       51 (35.9%)  25 (24.0%)  36 (34.0%)            
##     4                                                       54 (38.0%)  38 (36.5%)  47 (44.3%)            
## A6.1:                                                                                             0.351   
##     1                                                        5 (3.52%)   6 (5.77%)   2 (1.89%)            
##     2                                                       137 (96.5%) 98 (94.2%)  104 (98.1%)           
## A6.2:                                                                                             0.507   
##     1                                                       15 (10.6%)  14 (13.5%)   9 (8.49%)            
##     2                                                       127 (89.4%) 90 (86.5%)  97 (91.5%)            
## A6.3:                                                                                             0.862   
##     1                                                        4 (2.82%)   4 (3.85%)   3 (2.83%)            
##     2                                                       138 (97.2%) 100 (96.2%) 103 (97.2%)           
## A7.1:                                                                                            <0.001   
##     1                                                       66 (46.5%)  25 (24.0%)  28 (26.4%)            
##     2                                                       76 (53.5%)  79 (76.0%)  78 (73.6%)            
## A7.2:                                                                                             0.013   
##     1                                                       45 (31.7%)  18 (17.3%)  20 (18.9%)            
##     2                                                       97 (68.3%)  86 (82.7%)  86 (81.1%)            
## A7.3:                                                                                               .     
##     1                                                       70 (49.3%)  75 (72.1%)  84 (79.2%)            
##     2                                                        8 (5.63%)   1 (0.96%)   4 (3.77%)            
##     3                                                       13 (9.15%)   1 (0.96%)   2 (1.89%)            
##     4                                                        9 (6.34%)   0 (0.00%)   1 (0.94%)            
##     5                                                        3 (2.11%)   2 (1.92%)   1 (0.94%)            
##     6                                                        5 (3.52%)   2 (1.92%)   2 (1.89%)            
##     7                                                       34 (23.9%)  23 (22.1%)  12 (11.3%)            
## A8.1:                                                                                             0.678   
##     1                                                       37 (26.1%)  25 (24.0%)  30 (28.3%)            
##     2                                                       19 (13.4%)   9 (8.65%)  10 (9.43%)            
##     3                                                       86 (60.6%)  70 (67.3%)  66 (62.3%)            
## A8.2:                                                                                             0.931   
##     1                                                       18 (12.7%)  14 (13.5%)  15 (14.2%)            
##     2                                                        4 (2.82%)   4 (3.85%)   5 (4.72%)            
##     3                                                       120 (84.5%) 86 (82.7%)  86 (81.1%)            
## A8.3:                                                                                             0.004   
##     1                                                       99 (70.2%)  91 (87.5%)  85 (80.2%)            
##     2                                                        8 (5.67%)   0 (0.00%)   1 (0.94%)            
##     3                                                       34 (24.1%)  13 (12.5%)  20 (18.9%)            
## A8.4:                                                                                            <0.001   
##     1                                                       80 (56.3%)  18 (17.3%)  27 (25.5%)            
##     2                                                       24 (16.9%)  16 (15.4%)  18 (17.0%)            
##     3                                                       38 (26.8%)  70 (67.3%)  61 (57.5%)            
## Thuc hanh TKV:                                                                                    0.039   
##     khong TKV                                               68 (47.9%)  57 (54.8%)  68 (64.2%)            
##     co TKV                                                  74 (52.1%)  47 (45.2%)  38 (35.8%)            
## Thoi gian th TKV:                                                                                 0.014   
##     Không ?úng th?i ?i?m                                    54 (71.1%)  79 (84.9%)  24 (63.2%)            
##     khám ?úng th?i ?i?m 7-10 ngay                           22 (28.9%)  14 (15.1%)  14 (36.8%)            
## Tu the coi ao boc lo nguc truoc guong hoac ke goi duoi vai:                                      <0.001   
##     khong                                                   26 (34.2%)  64 (68.8%)  13 (34.2%)            
##     co                                                      50 (65.8%)  29 (31.2%)  25 (65.8%)            
## Quan sat hinh the:                                                                               <0.001   
##     khong                                                   28 (36.8%)  57 (61.3%)  10 (26.3%)            
##     co                                                      48 (63.2%)  36 (38.7%)  28 (73.7%)            
## Quan sat da vung vu:                                                                              0.003   
##     khong                                                   33 (43.4%)  54 (58.1%)  10 (26.3%)            
##     co                                                      43 (56.6%)  39 (41.9%)  28 (73.7%)            
## Quan sat num vu:                                                                                  0.004   
##     khong                                                   34 (44.7%)  54 (58.1%)  10 (26.3%)            
##     co                                                      42 (55.3%)  39 (41.9%)  28 (73.7%)            
## So sanh 2 vu:                                                                                    <0.001   
##     Khong                                                   18 (23.7%)  59 (63.4%)  14 (37.8%)            
##     Co                                                      58 (76.3%)  34 (36.6%)  23 (62.2%)            
## Danh gia thay doi huong num vu:                                                                   0.009   
##     Khong                                                   40 (52.6%)  70 (75.3%)  25 (65.8%)            
##     Co                                                      36 (47.4%)  23 (24.7%)  13 (34.2%)            
## Chong tay quan sat: Co                                       11 (100%)   4 (100%)    5 (100%)       .     
## Kiem tra tiet dich:                                                                              <0.001   
##     Khong                                                   39 (51.3%)  75 (80.6%)  28 (73.7%)            
##     Co                                                      37 (48.7%)  18 (19.4%)  10 (26.3%)            
## Kham hach:                                                                                        0.011   
##     khong                                                   50 (66.7%)  78 (83.9%)  24 (63.2%)            
##     Co                                                      25 (33.3%)  15 (16.1%)  14 (36.8%)            
## ep ngon tay de len mo vu:                                                                        <0.001   
##     Khong                                                   28 (37.3%)  78 (83.9%)  18 (47.4%)            
##     Co                                                      47 (62.7%)  15 (16.1%)  20 (52.6%)            
## Luc de thay doi:                                                                                 <0.001   
##     khong thay doi luc de                                   33 (44.0%)  77 (82.8%)  22 (57.9%)            
##     co thay doi luc de                                      42 (56.0%)  16 (17.2%)  16 (42.1%)            
## Dùng tay T khám vú P và tay P khám vú T:                                                         <0.001   
##     khong dung tay nay kham vu kia                          33 (44.0%)  70 (75.3%)  12 (31.6%)            
##     co dung tay nay kham vu kia                             42 (56.0%)  23 (24.7%)  26 (68.4%)            
## Xoay deu ko bo sot phan mo vu:                                                                   <0.001   
##     khong xoay deu cac mo vu                                45 (60.0%)  80 (86.0%)  32 (84.2%)            
##     co xoay deu cac mo vu                                   30 (40.0%)  13 (14.0%)   6 (15.8%)            
## C10.1:                                                                                           <0.001   
##     0                                                       26 (34.7%)  69 (74.2%)  16 (42.1%)            
##     1                                                       49 (65.3%)  24 (25.8%)  22 (57.9%)            
## C10.2:                                                                                            0.001   
##     0                                                       40 (54.8%)  76 (81.7%)  23 (60.5%)            
##     1                                                       33 (45.2%)  17 (18.3%)  15 (39.5%)            
## thuc hien so nan vu:                                                                                .     
##     khong TH                                                  0 (.%)     9 (81.8%)    0 (.%)              
##     Co TH                                                     0 (.%)     2 (18.2%)    0 (.%)              
## C10.1:                                                                                           <0.001   
##     0                                                       26 (34.7%)  69 (74.2%)  16 (42.1%)            
##     1                                                       49 (65.3%)  24 (25.8%)  22 (57.9%)            
## C10.2:                                                                                            0.001   
##     0                                                       40 (54.8%)  76 (81.7%)  23 (60.5%)            
##     1                                                       33 (45.2%)  17 (18.3%)  15 (39.5%)            
## Tuoi                                                        44.8 (9.57) 46.5 (9.93) 47.0 (9.80)   0.156   
## Tong diem nhan thuc nhay cam                                13.1 (4.80) 9.82 (5.65) 10.0 (5.26)  <0.001   
## Tong diem muc do nghiem trong                               24.5 (5.52) 22.0 (7.90) 21.8 (7.50)   0.003   
## Tong diem loi ich TKV                                       23.7 (4.90) 20.0 (9.96) 20.4 (9.05)  <0.001   
## Tong diem rao can                                           14.6 (5.23) 10.6 (5.98) 12.6 (7.28)  <0.001   
## Tong diem dong luc TKV                                      29.1 (4.55) 26.8 (6.78) 26.2 (7.90)   0.001   
## Tong diem hieu qua ban than                                 32.7 (11.5) 21.2 (13.9) 22.2 (12.4)  <0.001   
## Tong diem raocan TKV                                        14.6 (5.23) 10.6 (5.98) 12.9 (8.04)  <0.001   
## ¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯
export2xls(t2a, file = "C:/Users/binht/Dropbox/Hue/data/2022_data_consultant/2 dd2/R/example.xlsx")
export2xls(t1a1, file = "C:/Users/binht/Dropbox/Hue/data/2022_data_consultant/2 dd2/R/t1a1.xlsx")
export2xls(t1a0, file = "C:/Users/binht/Dropbox/Hue/data/2022_data_consultant/2 dd2/R/t1a0.xlsx")
  1. Logistic model to determine the associated with BSE practice
library(epiDisplay)
## Loading required package: foreign
## Loading required package: survival
## Loading required package: MASS
## Loading required package: nnet
m1= glm(C10.1 ~ NhomNC* TB1_5 +  TB6_12  +   TB32_42, family=binomial, data=dd2)
summary(m1)
## 
## Call:
## glm(formula = C10.1 ~ NhomNC * TB1_5 + TB6_12 + TB32_42, family = binomial, 
##     data = dd2)
## 
## Deviance Residuals: 
##     Min       1Q   Median       3Q      Max  
## -1.7923  -0.9496  -0.4696   0.9694   2.0614  
## 
## Coefficients:
##               Estimate Std. Error z value Pr(>|z|)  
## (Intercept)   -0.21858    0.93808  -0.233   0.8158  
## NhomNC2       -1.86627    0.90863  -2.054   0.0400 *
## NhomNC3        0.28264    1.10930   0.255   0.7989  
## TB1_5          0.06226    0.05226   1.191   0.2335  
## TB6_12        -0.03040    0.02282  -1.333   0.1827  
## TB32_42        0.02373    0.01248   1.902   0.0572 .
## NhomNC2:TB1_5  0.04898    0.06693   0.732   0.4643  
## NhomNC3:TB1_5 -0.03218    0.08786  -0.366   0.7141  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## (Dispersion parameter for binomial family taken to be 1)
## 
##     Null deviance: 284.33  on 205  degrees of freedom
## Residual deviance: 238.71  on 198  degrees of freedom
##   (146 observations deleted due to missingness)
## AIC: 254.71
## 
## Number of Fisher Scoring iterations: 4
logistic.display(m1)
## 
## Logistic regression predicting C10.1 : 1 vs 0 
##  
##                       crude OR(95%CI)   adj. OR(95%CI)     P(Wald's test)
## NhomNC: ref.=1                                                           
##    2                  0.18 (0.09,0.36)  0.15 (0.03,0.92)   0.04          
##    3                  0.73 (0.33,1.62)  1.33 (0.15,11.67)  0.799         
##                                                                          
## TB1_5 (cont. var.)    1.12 (1.06,1.18)  1.06 (0.96,1.18)   0.234         
##                                                                          
## TB6_12 (cont. var.)   1 (0.96,1.04)     0.97 (0.93,1.01)   0.183         
##                                                                          
## TB32_42 (cont. var.)  1.05 (1.02,1.07)  1.02 (1,1.05)      0.057         
##                                                                          
## NhomNC:TB1_5: ref.=1:                                                    
##    2:                 -                 1.05 (0.92,1.2)    0.464         
##    3:                 -                 0.97 (0.82,1.15)   0.714         
##                                                                          
##                       P(LR-test)
## NhomNC: ref.=1        0.029     
##    2                            
##    3                            
##                                 
## TB1_5 (cont. var.)    1         
##                                 
## TB6_12 (cont. var.)   0.179     
##                                 
## TB32_42 (cont. var.)  0.057     
##                                 
## NhomNC:TB1_5: ref.=1: 0.56      
##    2:                           
##    3:                           
##                                 
## Log-likelihood = -119.3554
## No. of observations = 206
## AIC value = 254.7107
#dd2a <- na.omit(dd2) 
mydata1=subset(dd2, select=c("TB1_5" ,  "TB6_12",  "TB13_18" ,  "TB" ,  "TB25_31"  , "TB32_42"))
library("Hmisc")
## Loading required package: lattice
## 
## Attaching package: 'lattice'
## The following object is masked from 'package:epiDisplay':
## 
##     dotplot
## Loading required package: Formula
## Loading required package: ggplot2
## 
## Attaching package: 'ggplot2'
## The following object is masked from 'package:epiDisplay':
## 
##     alpha
## 
## Attaching package: 'Hmisc'
## The following objects are masked from 'package:table1':
## 
##     label, label<-, units
## The following objects are masked from 'package:base':
## 
##     format.pval, units
library('PerformanceAnalytics')
## Loading required package: xts
## Loading required package: zoo
## 
## Attaching package: 'zoo'
## The following objects are masked from 'package:base':
## 
##     as.Date, as.Date.numeric
## 
## Attaching package: 'PerformanceAnalytics'
## The following object is masked from 'package:graphics':
## 
##     legend
res2 <- rcorr(as.matrix(mydata1))
res2
##         TB1_5 TB6_12 TB13_18    TB TB25_31 TB32_42
## TB1_5    1.00   0.28    0.32  0.20    0.22    0.34
## TB6_12   0.28   1.00    0.23 -0.13    0.29    0.05
## TB13_18  0.32   0.23    1.00  0.11    0.64    0.47
## TB       0.20  -0.13    0.11  1.00    0.02    0.32
## TB25_31  0.22   0.29    0.64  0.02    1.00    0.39
## TB32_42  0.34   0.05    0.47  0.32    0.39    1.00
## 
## n
##         TB1_5 TB6_12 TB13_18  TB TB25_31 TB32_42
## TB1_5     352    352     351 352     352     352
## TB6_12    352    352     351 352     352     352
## TB13_18   351    351     351 351     351     351
## TB        352    352     351 352     352     352
## TB25_31   352    352     351 352     352     352
## TB32_42   352    352     351 352     352     352
## 
## P
##         TB1_5  TB6_12 TB13_18 TB     TB25_31 TB32_42
## TB1_5          0.0000 0.0000  0.0002 0.0000  0.0000 
## TB6_12  0.0000        0.0000  0.0174 0.0000  0.3569 
## TB13_18 0.0000 0.0000         0.0455 0.0000  0.0000 
## TB      0.0002 0.0174 0.0455         0.7431  0.0000 
## TB25_31 0.0000 0.0000 0.0000  0.7431         0.0000 
## TB32_42 0.0000 0.3569 0.0000  0.0000 0.0000
chart.Correlation(mydata1, histogram=TRUE, pch=25)

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