getwd()
## [1] "/Users/idlhy/Library/CloudStorage/OneDrive-개인/R FILE"
setwd("/Users/idlhy/Library/CloudStorage/OneDrive-개인/바탕 화면/Research/Puberty Delinquency(HRB)")
library(tidyverse)
## ── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──
## ✓ ggplot2 3.3.5 ✓ purrr 0.3.4
## ✓ tibble 3.1.6 ✓ dplyr 1.0.7
## ✓ tidyr 1.1.4 ✓ stringr 1.4.0
## ✓ readr 2.1.1 ✓ forcats 0.5.1
## ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
## x dplyr::filter() masks stats::filter()
## x dplyr::lag() masks stats::lag()
library(readr)
library(haven)
library(readxl)
# 1. Intercept
intercept <- read_excel("./4. sas print files/220929_female_w2_w6_only drinking.xlsx", sheet = "intercept_prevalence")
colors <- c("late" = "#0000CC",
"early" = "#CC0000",
"on time" = "#1B9E77")
linetypes <- c("late" = 5,
"early" = 1,
"on time" = 6)
ggplot(intercept) +
aes(x = Grade) +
geom_line(aes(y = early, color = "early", lty = "early"), size = 1) +
geom_line(aes(y = normal, color = "on time", lty = "on time"), size = 1) +
geom_line(aes(y = late, color = "late", lty = "late"), size = 1) +
geom_ribbon(aes(ymin = e_l, ymax = e_u), color = "#CC0000", alpha = 0.05, lty = "dotted") +
geom_ribbon(aes(ymin = n_l, ymax = n_u), color = "#1B9E77", alpha = 0.05, lty = "dotted") +
geom_ribbon(aes(ymin = l_l, ymax = l_u), color = "#0000CC", alpha = 0.05, lty = "dotted") +
theme_bw() +
scale_color_manual(values = colors) +
scale_linetype_manual(values = linetypes) +
labs(x = "Grade"
, y = "Prevalence"
, color = "Puberty Group"
, lty = "Puberty Group") +
theme(legend.position = "bottom",
plot.title = element_text(family = "Times New Roman", size = (16)),
legend.title = element_text(family = "Times New Roman", size = (16)),
legend.text = element_text(family = "Times New Roman", size = (16)),
axis.title = element_text(family = "Times New Roman", size = (16)),
axis.text = element_text(family = "Times New Roman", size = (16)))
## Only E and L
ggplot(intercept) +
aes(x = Grade) +
geom_line(aes(y = early, color = "early", lty = "early"), size = 1) +
geom_line(aes(y = late, color = "late", lty = "late"), size = 1) +
geom_ribbon(aes(ymin = e_l, ymax = e_u), color = "#CC0000", alpha = 0.1, lty = "dotted") +
geom_ribbon(aes(ymin = l_l, ymax = l_u), color = "#0000CC", alpha = 0.1, lty = "dotted") +
theme_bw() +
scale_color_manual(values = colors
, limits = c("early", "late")) +
labs(x = "Grade"
, y = "Prevalence"
, lty = "Puberty Group"
, color = "Puberty Group") +
theme(legend.position = "bottom",
plot.title = element_text(family = "Times New Roman", size = (16)),
legend.title = element_text(family = "Times New Roman", size = (16)),
legend.text = element_text(family = "Times New Roman", size = (16)),
axis.title = element_text(family = "Times New Roman", size = (16)),
axis.text = element_text(family = "Times New Roman", size = (16)))
# 2. Peer Substance Abuse
PeerSubstanceUse <- read_excel("./4. sas print files/220929_female_w2_w6_only drinking.xlsx", sheet = "Peer Substance Use")
ggplot(PeerSubstanceUse) +
aes(x = Grade) +
geom_line(aes(y = early, color = "early", lty = "early"), size = 1) +
geom_line(aes(y = normal, color = "on time", lty = "on time"), size = 1) +
geom_line(aes(y = late, color = "late", lty = "late"), size = 1) +
geom_line(aes(y = 0), size = 1) +
geom_ribbon(aes(ymin = e_l, ymax = e_u), color = "#CC0000", alpha = 0.04, lty = "dotted") +
geom_ribbon(aes(ymin = n_l, ymax = n_u), color = "#1B9E77", alpha = 0.04, lty = "dotted") +
geom_ribbon(aes(ymin = l_l, ymax = l_u), color = "#0000CC", alpha = 0.04, lty = "dotted") +
theme_bw() +
scale_color_manual(values = colors
, limits = c("early", "late", "on time")) +
labs(x = "Grade"
, y = "Coefficient"
, lty = "Puberty Group"
, color = "Puberty Group") +
theme(legend.position = "bottom",
plot.title = element_text(family = "Times New Roman", size = (16)),
legend.title = element_text(family = "Times New Roman", size = (16)),
legend.text = element_text(family = "Times New Roman", size = (16)),
axis.title = element_text(family = "Times New Roman", size = (16)),
axis.text = element_text(family = "Times New Roman", size = (16)))+
ylim(-3.5, 3.5)
## E and L only
ggplot(PeerSubstanceUse) +
aes(x = Grade) +
geom_line(aes(y = early, color = "early", lty = "early"), size = 1) +
geom_line(aes(y = late, color = "late", lty = "late"), size = 1) +
geom_line(aes(y = 0), size = 1) +
geom_ribbon(aes(ymin = e_l, ymax = e_u), color = "#CC0000", alpha = 0.1, lty = "dotted") +
geom_ribbon(aes(ymin = l_l, ymax = l_u), color = "#0000CC", alpha = 0.1, lty = "dotted") +
theme_bw() +
scale_color_manual(values = colors
, limits = c("early", "late")) +
labs(x = "Grade"
, y = "Coefficient"
, lty = "Puberty Group"
, color = "Puberty Group") +
theme(legend.position = "bottom",
plot.title = element_text(family = "Times New Roman", size = (16)),
legend.title = element_text(family = "Times New Roman", size = (16)),
legend.text = element_text(family = "Times New Roman", size = (16)),
axis.title = element_text(family = "Times New Roman", size = (16)),
axis.text = element_text(family = "Times New Roman", size = (16))) +
ylim(-3.5, 3.5)
#3. Parent Attachment
ParentAttachment <- read_excel("./4. sas print files/220929_female_w2_w6_only drinking.xlsx", sheet = "Parent Attachment")
ggplot(ParentAttachment) +
aes(x = Grade) +
geom_line(aes(y = early, color = "early", lty = "early"), size = 1) +
geom_line(aes(y = normal, color = "on time", lty = "on time"), size = 1) +
geom_line(aes(y = late, color = "late", lty = "late"), size = 1) +
geom_line(aes(y = 0), size = 1) +
geom_ribbon(aes(ymin = e_l, ymax = e_u), color = "#CC0000", alpha = 0.04, lty = "dotted") +
geom_ribbon(aes(ymin = n_l, ymax = n_u), color = "#1B9E77", alpha = 0.04, lty = "dotted") +
geom_ribbon(aes(ymin = l_l, ymax = l_u), color = "#0000CC", alpha = 0.04, lty = "dotted") +
theme_bw() +
scale_color_manual(values = colors
, limits = c("early", "late", "on time")) +
labs(x = "Grade"
, y = "Coefficient"
, lty = "Puberty Group"
, color = "Puberty Group") +
theme(legend.position = "bottom",
plot.title = element_text(family = "Times New Roman", size = (16)),
legend.title = element_text(family = "Times New Roman", size = (16)),
legend.text = element_text(family = "Times New Roman", size = (16)),
axis.title = element_text(family = "Times New Roman", size = (16)),
axis.text = element_text(family = "Times New Roman", size = (16)))+
ylim(-3.5, 3.5)
## E and L only
ggplot(ParentAttachment) +
aes(x = Grade) +
geom_line(aes(y = early, color = "early", lty = "early"), size = 1) +
geom_line(aes(y = late, color = "late", lty = "late"), size = 1) +
geom_line(aes(y = 0), size = 1) +
geom_ribbon(aes(ymin = e_l, ymax = e_u), color = "#CC0000", alpha = 0.1, lty = "dotted") +
geom_ribbon(aes(ymin = l_l, ymax = l_u), color = "#0000CC", alpha = 0.1, lty = "dotted") +
theme_bw() +
scale_color_manual(values = colors
, limits = c("early", "late")) +
labs(x = "Grade"
, y = "Coefficient"
, lty = "Puberty Group"
, color = "Puberty Group") +
theme(legend.position = "bottom",
plot.title = element_text(family = "Times New Roman", size = (16)),
legend.title = element_text(family = "Times New Roman", size = (16)),
legend.text = element_text(family = "Times New Roman", size = (16)),
axis.title = element_text(family = "Times New Roman", size = (16)),
axis.text = element_text(family = "Times New Roman", size = (16)))+
ylim(-3.5, 3.5)
# 4. Coeducation
Coeducation <- read_excel("./4. sas print files/220929_female_w2_w6_only drinking.xlsx", sheet = "Coeducation")
ggplot(Coeducation) +
aes(x = Grade) +
geom_line(aes(y = early, color = "early", lty = "early"), size = 1) +
geom_line(aes(y = normal, color = "on time", lty = "on time"), size = 1) +
geom_line(aes(y = late, color = "late", lty = "late"), size = 1) +
geom_line(aes(y = 0), size = 1) +
geom_ribbon(aes(ymin = e_l, ymax = e_u), color = "#CC0000", alpha = 0.04, lty = "dotted") +
geom_ribbon(aes(ymin = n_l, ymax = n_u), color = "#1B9E77", alpha = 0.04, lty = "dotted") +
geom_ribbon(aes(ymin = l_l, ymax = l_u), color = "#0000CC", alpha = 0.04, lty = "dotted") +
theme_bw() +
scale_color_manual(values = colors
, limits = c("early", "late", "on time")) +
labs(x = "Grade"
, y = "Coefficient"
, lty = "Puberty Group"
, color = "Puberty Group") +
theme(legend.position = "bottom",
plot.title = element_text(family = "Times New Roman", size = (16)),
legend.title = element_text(family = "Times New Roman", size = (16)),
legend.text = element_text(family = "Times New Roman", size = (16)),
axis.title = element_text(family = "Times New Roman", size = (16)),
axis.text = element_text(family = "Times New Roman", size = (16)))+
ylim(-3.5, 3.5)
## E and L only
ggplot(Coeducation) +
aes(x = Grade) +
geom_line(aes(y = early, color = "early", lty = "early"), size = 1) +
geom_line(aes(y = late, color = "late", lty = "late"), size = 1) +
geom_line(aes(y = 0), size = 1) +
geom_ribbon(aes(ymin = e_l, ymax = e_u), color = "#CC0000", alpha = 0.1, lty = "dotted") +
geom_ribbon(aes(ymin = l_l, ymax = l_u), color = "#0000CC", alpha = 0.1, lty = "dotted") +
theme_bw() +
scale_color_manual(values = colors
, limits = c("early", "late")) +
labs(x = "Grade"
, y = "Coefficient"
, lty = "Puberty Group"
, color = "Puberty Group") +
theme(legend.position = "bottom",
plot.title = element_text(family = "Times New Roman", size = (16)),
legend.title = element_text(family = "Times New Roman", size = (16)),
legend.text = element_text(family = "Times New Roman", size = (16)),
axis.title = element_text(family = "Times New Roman", size = (16)),
axis.text = element_text(family = "Times New Roman", size = (16)))+
ylim(-3.5, 3.5)
# 5. Overall Group
# Intercept
T_int <- read_excel("./4. sas print files/220929_female_w2_w6_only drinking.xlsx", sheet = "T_int")
ggplot(T_int) +
aes(x = Grade) +
geom_line(aes(y = total), size = 1) +
geom_line(aes(y = 0), size = 1) +
geom_ribbon(aes(ymin = t_l, ymax = t_u), color = "#CC0000", alpha = 0.04, lty = "dotted") +
theme_bw() +
labs(x = "Grade"
, y = "Prevalence"
, title = "Intercept"
, lty = "Puberty Group"
, color = "Puberty Group") +
theme(legend.position = "bottom",
plot.title = element_text(family = "Times New Roman", size = (16)),
legend.title = element_text(family = "Times New Roman", size = (16)),
legend.text = element_text(family = "Times New Roman", size = (16)),
axis.title = element_text(family = "Times New Roman", size = (16)),
axis.text = element_text(family = "Times New Roman", size = (16)))+
ylim(0, 0.5)
# Parent attachment
T_parent <- read_excel("./4. sas print files/220929_female_w2_w6_only drinking.xlsx", sheet = "T_parent")
ggplot(T_parent) +
aes(x = Grade) +
geom_line(aes(y = total), size = 1) +
geom_line(aes(y = 0), size = 1) +
geom_ribbon(aes(ymin = t_l, ymax = t_u), color = "#CC0000", alpha = 0.04, lty = "dotted") +
theme_bw() +
labs(x = "Grade"
, y = "Coefficient"
, title = "Parent Attachment"
, lty = "Puberty Group"
, color = "Puberty Group") +
theme(legend.position = "bottom",
plot.title = element_text(family = "Times New Roman", size = (16)),
legend.title = element_text(family = "Times New Roman", size = (16)),
legend.text = element_text(family = "Times New Roman", size = (16)),
axis.title = element_text(family = "Times New Roman", size = (16)),
axis.text = element_text(family = "Times New Roman", size = (16)))+
ylim(-3.5, 3.5)
# Peer Substance Use
T_peer <- read_excel("./4. sas print files/220929_female_w2_w6_only drinking.xlsx", sheet = "T_peer")
ggplot(T_peer) +
aes(x = Grade) +
geom_line(aes(y = total), size = 1) +
geom_line(aes(y = 0), size = 1) +
geom_ribbon(aes(ymin = t_l, ymax = t_u), color = "#CC0000", alpha = 0.04, lty = "dotted") +
theme_bw() +
labs(x = "Grade"
, y = "Coefficient"
, title = "Peer Substance Abuse"
, lty = "Puberty Group"
, color = "Puberty Group") +
theme(legend.position = "bottom",
plot.title = element_text(family = "Times New Roman", size = (16)),
legend.title = element_text(family = "Times New Roman", size = (16)),
legend.text = element_text(family = "Times New Roman", size = (16)),
axis.title = element_text(family = "Times New Roman", size = (16)),
axis.text = element_text(family = "Times New Roman", size = (16)))+
ylim(-3.5, 3.5)
# Coeducation
T_coedu <- read_excel("./4. sas print files/220929_female_w2_w6_only drinking.xlsx", sheet = "T_coedu")
ggplot(T_coedu) +
aes(x = Grade) +
geom_line(aes(y = total), size = 1) +
geom_line(aes(y = 0), size = 1) +
geom_ribbon(aes(ymin = t_l, ymax = t_u), color = "#CC0000", alpha = 0.04, lty = "dotted") +
theme_bw() +
labs(x = "Grade"
, y = "Coefficient"
, title = "Coeducation"
, lty = "Puberty Group"
, color = "Puberty Group") +
theme(legend.position = "bottom",
plot.title = element_text(family = "Times New Roman", size = (16)),
legend.title = element_text(family = "Times New Roman", size = (16)),
legend.text = element_text(family = "Times New Roman", size = (16)),
axis.title = element_text(family = "Times New Roman", size = (16)),
axis.text = element_text(family = "Times New Roman", size = (16)))+
ylim(-3.5, 3.5)
# 6. Puberty Group Distribution
library(haven)
library(ggridges)
data <- read_dta("./2. stata_cleaning data/1. current_using_data/KCYPS2010m1_w2_w6_female_220910.dta")
data$n_puberty_f_3 <- data$n_puberty_f_3 %>%
as.character() %>%
fct_recode(
"On time" = "0",
"Early" = "1",
"Late" = "2")
colors2 <- c("Late" = "#0000CC",
"Early" = "#CC0000",
"On time" = "#1B9E77")
data %>%
filter(!is.na(n_puberty_f_3)) %>%
ggplot(aes(x = n_puberty_f_2,
y = factor(n_puberty_f_3, levels = c("Early", "On time", "Late")),
height = ..density..,
fill = n_puberty_f_3)) +
geom_density_ridges(stat = "density",
alpha = 0.7) +
scale_fill_manual(values = colors2) +
theme_bw() +
labs(x = "Age (month)"
, y = ""
, title = ""
, fill = "Puberty Group") +
theme(legend.position = "bottom",
plot.title = element_text(family = "Times New Roman", size = (16)),
legend.title = element_text(family = "Times New Roman", size = (15)),
legend.text = element_text(family = "Times New Roman", size = (15)),
axis.title = element_text(family = "Times New Roman", size = (15)),
axis.text = element_text(family = "Times New Roman", size = (15)))
