total_installer

package_installer:

rm(list = ls())
# File-Name:       package_installer.R           
# Date:            2012-02-10                         
# Author:          Drew Conway (drew.conway@nyu.edu)
# Purpose:         Install all of the packages needed for the Machine Learning for Hackers case studies
# Data Used:       n/a
# Packages Used:   n/a

# All source code is copyright (c) 2012, under the Simplified BSD License.  
# For more information on FreeBSD see: http://www.opensource.org/licenses/bsd-license.php

# All images and materials produced by this code are licensed under the Creative Commons 
# Attribution-Share Alike 3.0 United States License: http://creativecommons.org/licenses/by-sa/3.0/us/

# All rights reserved.

# Create a vector containing all of the packages that will be used in the case studies
# (in no particular order)

options(repos=structure(c(CRAN="http://cran.rstudio.com/")))

cran.packages <- c("nycflights13","curl","RCurl","RSQLite","RPostgreSQL","RCassandra","gaoptim","rgenoud","SPOT","GA","pROC","doMC","doParallel","BatchExperiments","batch","batchmeans","x12","twitteR","Rfacebook","Rlinkedin","jpeg","seewave","ggmap","quantmod","WDI","Quandl")

cat("This script will now attempt to install all of the R packages used in 'Machine Learning for Hackers'")

## This script will now attempt to install all of the R packages used in 'Machine Learning for Hackers'

for(p in cran.packages) {
    if(!suppressWarnings(require(p, character.only = TRUE, quietly = TRUE))) {
        cat(paste(p, "missing, will attempt to install\n"))
        install.packages(p, dependencies = TRUE, type = "source")
    }
    else {
        cat(paste(p, "installed OK\n"))
    }
}

## nycflights13 installed OK
## curl installed OK
## RCurl installed OK
## RSQLite installed OK
## RPostgreSQL installed OK
## RCassandra installed OK
## gaoptim installed OK

## ##  rgenoud (Version 5.7-12, Build Date: 2013-06-28)
## ##  See http://sekhon.berkeley.edu/rgenoud for additional documentation.
## ##  Please cite software as:
## ##   Walter Mebane, Jr. and Jasjeet S. Sekhon. 2011.
## ##   ``Genetic Optimization Using Derivatives: The rgenoud package for R.''
## ##   Journal of Statistical Software, 42(11): 1-26. 
## ##

## rgenoud installed OK
## SPOT installed OK
## GA missing, will attempt to install
## 
## The downloaded source packages are in
##  '/private/var/folders/tg/z6swp7697356w9r6yr93pccw0000gp/T/RtmpKAhxK8/downloaded_packages'

## Type 'citation("pROC")' for a citation.
## 
## Attaching package: 'pROC'
## 
## The following objects are masked from 'package:stats':
## 
##     cov, smooth, var

## pROC installed OK
## doMC installed OK
## doParallel installed OK

## Loading required package: BBmisc
## Sourcing configuration file: '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BatchJobs/etc/BatchJobs_global_config.R'
## BatchJobs configuration:
##   cluster functions: Interactive
##   mail.from: 
##   mail.to: 
##   mail.start: none
##   mail.done: none
##   mail.error: none
##   default.resources: 
##   debug: FALSE
##   raise.warnings: FALSE
##   staged.queries: TRUE
##   max.concurrent.jobs: Inf
##   fs.timeout: NA

## BatchExperiments installed OK
## batch installed OK

## batchmeans: Consistent Batch Means Estimation of Monte Carlo Standard Errors
## Version 1.0-2 created on 1-6-2015.
## copyright (c) 2012-15, Murali Haran, Penn State University
##                     John Hughes, University of Minnesota
## For citation information, type citation("batchmeans").
## Type help(package = batchmeans) to get started.

## batchmeans installed OK

## x12 is ready to use.
## Use the package x12GUI for a Graphical User Interface. 
## 
## It is advised to set the path to the X12 or X13 executables
## 
## with x12path(validpath) or x13path(validpath)!
## 
## ---------------
## 
## Suggestions and bug-reports can be submitted at: https://github.com/alexkowa/x12/issues
## 
## Attaching package: 'x12'
## 
## The following object is masked from 'package:foreach':
## 
##     times

## x12 installed OK

## 
## Attaching package: 'twitteR'
## 
## The following object is masked from 'package:BatchJobs':
## 
##     showStatus

## twitteR installed OK

## 
## Attaching package: 'httr'
## 
## The following object is masked from 'package:curl':
## 
##     handle_reset
## 
## 
## Attaching package: 'Rfacebook'
## 
## The following object is masked from 'package:twitteR':
## 
##     updateStatus

## Rfacebook installed OK

## 
## Attaching package: 'Rlinkedin'
## 
## The following object is masked from 'package:BatchJobs':
## 
##     getJobs

## Rlinkedin installed OK
## jpeg installed OK
## seewave missing, will attempt to install

## also installing the dependencies 'signal', 'tuneR', 'audio', 'fftw', 'rpanel'

## Warning in install.packages(p, dependencies = TRUE, type = "source"):
## installation of package 'signal' had non-zero exit status

## Warning in install.packages(p, dependencies = TRUE, type = "source"):
## installation of package 'fftw' had non-zero exit status

## Warning in install.packages(p, dependencies = TRUE, type = "source"):
## installation of package 'tuneR' had non-zero exit status

## Warning in install.packages(p, dependencies = TRUE, type = "source"):
## installation of package 'seewave' had non-zero exit status

## 
## The downloaded source packages are in
##  '/private/var/folders/tg/z6swp7697356w9r6yr93pccw0000gp/T/RtmpKAhxK8/downloaded_packages'
## ggmap installed OK

## Loading required package: zoo
## 
## Attaching package: 'zoo'
## 
## The following objects are masked from 'package:base':
## 
##     as.Date, as.Date.numeric
## 
## Version 0.4-0 included new data defaults. See ?getSymbols.

## quantmod installed OK

## 
## Attaching package: 'RJSONIO'
## 
## The following objects are masked from 'package:rjson':
## 
##     fromJSON, toJSON

## WDI installed OK
## Quandl installed OK

print("### All required packages installed ###")

## [1] "### All required packages installed ###"

package_installer:

rm(list = ls())
# File-Name:       package_installer.R           
# Date:            2012-02-10                         
# Author:          Drew Conway (drew.conway@nyu.edu)
# Purpose:         Install all of the packages needed for the Machine Learning for Hackers case studies
# Data Used:       n/a
# Packages Used:   n/a

# All source code is copyright (c) 2012, under the Simplified BSD License.  
# For more information on FreeBSD see: http://www.opensource.org/licenses/bsd-license.php

# All images and materials produced by this code are licensed under the Creative Commons 
# Attribution-Share Alike 3.0 United States License: http://creativecommons.org/licenses/by-sa/3.0/us/

# All rights reserved.

# Create a vector containing all of the packages that will be used in the case studies
# (in no particular order)

options(repos=structure(c(CRAN="http://cran.rstudio.com/")))

cran.packages <- c("apt","tseries","TSA","jsonlite","RJSONIO","dplyr","fracdiff","rugarch","fGarch","urca","astsa","RWeka","RWekajars","car","caret","forecast","clue","deldir","Rglpk","PerformanceAnalytics","IBrokers","backtest","stream","streamMOA","RMOA","RMOAjars","lattice","ggplot2","RcolorBrewer","latticeExtra","reshape")

cat("This script will now attempt to install all of the R packages used in 'Machine Learning for Hackers'")

## This script will now attempt to install all of the R packages used in 'Machine Learning for Hackers'

for(p in cran.packages) {
    if(!suppressWarnings(require(p, character.only = TRUE, quietly = TRUE))) {
        cat(paste(p, "missing, will attempt to install\n"))
        install.packages(p, dependencies = TRUE, type = "source")
    }
    else {
        cat(paste(p, "installed OK\n"))
    }
}

## Loading required package: lmtest
## 
## Attaching package: 'lmtest'
## 
## The following object is masked from 'package:RCurl':
## 
##     reset
## 
## 
## Attaching package: 'gWidgets'
## 
## The following object is masked from 'package:twitteR':
## 
##     id
## 
## The following object is masked from 'package:BBmisc':
## 
##     insert

## apt installed OK
## tseries installed OK

## locfit 1.5-9.1    2013-03-22
## Loading required package: nlme
## 
## Attaching package: 'nlme'
## 
## The following object is masked from 'package:Rlinkedin':
## 
##     getGroups
## 
## The following object is masked from 'package:BBmisc':
## 
##     collapse
## 
## This is mgcv 1.8-6. For overview type 'help("mgcv-package")'.
## 
## Attaching package: 'TSA'
## 
## The following objects are masked from 'package:stats':
## 
##     acf, arima
## 
## The following object is masked from 'package:utils':
## 
##     tar

## TSA installed OK

## Note: the specification for S3 class "AsIs" in package 'jsonlite' seems equivalent to one from package 'RJSONIO': not turning on duplicate class definitions for this class.
## Note: the specification for S3 class "integer64" in package 'jsonlite' seems equivalent to one from package 'bit64': not turning on duplicate class definitions for this class.
## 
## Attaching package: 'jsonlite'
## 
## The following objects are masked from 'package:RJSONIO':
## 
##     fromJSON, toJSON
## 
## The following objects are masked from 'package:rjson':
## 
##     fromJSON, toJSON
## 
## The following object is masked from 'package:utils':
## 
##     View

## jsonlite installed OK
## RJSONIO installed OK

## 
## Attaching package: 'dplyr'
## 
## The following object is masked from 'package:nlme':
## 
##     collapse
## 
## The following object is masked from 'package:gWidgets':
## 
##     id
## 
## The following objects are masked from 'package:xts':
## 
##     first, last
## 
## The following objects are masked from 'package:twitteR':
## 
##     id, location
## 
## The following object is masked from 'package:BBmisc':
## 
##     collapse
## 
## The following objects are masked from 'package:stats':
## 
##     filter, lag
## 
## The following objects are masked from 'package:base':
## 
##     intersect, setdiff, setequal, union

## dplyr installed OK
## fracdiff installed OK
## rugarch installed OK

## 
## Attaching package: 'timeDate'
## 
## The following objects are masked from 'package:TSA':
## 
##     kurtosis, skewness
## 
## 
## Attaching package: 'timeSeries'
## 
## The following object is masked from 'package:zoo':
## 
##     time<-
## 
## The following object is masked from 'package:twitteR':
## 
##     description
## 
## 
## 
## Rmetrics Package fBasics
## Analysing Markets and calculating Basic Statistics
## Copyright (C) 2005-2014 Rmetrics Association Zurich
## Educational Software for Financial Engineering and Computational Science
## Rmetrics is free software and comes with ABSOLUTELY NO WARRANTY.
## https://www.rmetrics.org --- Mail to: info@rmetrics.org
## 
## Attaching package: 'fBasics'
## 
## The following object is masked from 'package:TTR':
## 
##     volatility

## fGarch installed OK
## urca installed OK

## 
## Attaching package: 'astsa'
## 
## The following object is masked from 'package:fBasics':
## 
##     nyse

## astsa installed OK
## RWeka installed OK
## RWekajars installed OK

## 
## Attaching package: 'car'
## 
## The following object is masked from 'package:fBasics':
## 
##     densityPlot

## car installed OK

## 
## Attaching package: 'caret'
## 
## The following object is masked from 'package:httr':
## 
##     progress

## caret installed OK

## This is forecast 6.1 
## 
## 
## Attaching package: 'forecast'
## 
## The following object is masked from 'package:astsa':
## 
##     gas
## 
## The following objects are masked from 'package:TSA':
## 
##     fitted.Arima, plot.Arima
## 
## The following object is masked from 'package:nlme':
## 
##     getResponse

## forecast installed OK
## clue installed OK

## deldir 0.1-9

## deldir installed OK

## Using the GLPK callable library version 4.55

## Rglpk installed OK
## PerformanceAnalytics missing, will attempt to install

## also installing the dependencies 'gamlss.data', 'gdata', 'gamlss', 'gamlss.dist', 'gplots'

## Warning in install.packages(p, dependencies = TRUE, type = "source"):
## installation of package 'PerformanceAnalytics' had non-zero exit status

## 
## The downloaded source packages are in
##  '/private/var/folders/tg/z6swp7697356w9r6yr93pccw0000gp/T/RtmpKAhxK8/downloaded_packages'
## IBrokers missing, will attempt to install
## 
## The downloaded source packages are in
##  '/private/var/folders/tg/z6swp7697356w9r6yr93pccw0000gp/T/RtmpKAhxK8/downloaded_packages'
## backtest missing, will attempt to install
## 
## The downloaded source packages are in
##  '/private/var/folders/tg/z6swp7697356w9r6yr93pccw0000gp/T/RtmpKAhxK8/downloaded_packages'

## 
## Attaching package: 'proxy'
## 
## The following object is masked from 'package:timeSeries':
## 
##     as.matrix
## 
## The following objects are masked from 'package:stats':
## 
##     as.dist, dist
## 
## The following object is masked from 'package:base':
## 
##     as.matrix

## stream missing, will attempt to install

## also installing the dependencies 'crayon', 'testthat'

## 
## The downloaded source packages are in
##  '/private/var/folders/tg/z6swp7697356w9r6yr93pccw0000gp/T/RtmpKAhxK8/downloaded_packages'
## streamMOA missing, will attempt to install
## 
## The downloaded source packages are in
##  '/private/var/folders/tg/z6swp7697356w9r6yr93pccw0000gp/T/RtmpKAhxK8/downloaded_packages'

## 
## Attaching package: 'rJava'
## 
## The following object is masked from 'package:RCurl':
## 
##     clone
## 
## 
## Attaching package: 'RMOA'
## 
## The following object is masked from 'package:RWeka':
## 
##     DecisionStump

## RMOA installed OK
## RMOAjars installed OK
## lattice installed OK
## ggplot2 installed OK
## RcolorBrewer missing, will attempt to install

## Warning: package 'RcolorBrewer' is not available (for R version 3.2.0)

## Warning: Perhaps you meant 'RColorBrewer' ?

## 
## Attaching package: 'latticeExtra'
## 
## The following object is masked from 'package:ggplot2':
## 
##     layer

## latticeExtra installed OK
## reshape missing, will attempt to install
## 
## The downloaded source packages are in
##  '/private/var/folders/tg/z6swp7697356w9r6yr93pccw0000gp/T/RtmpKAhxK8/downloaded_packages'

print("### All required packages installed ###")

## [1] "### All required packages installed ###"