Early screening of lung cancer analysis tab mode
Huang Jing, Chongqing General Hospital
Contact: Wang Zhigang, wangzg.pumc@gmail.com
2022-07-08
- 1. Basic statistics for original 肺部结节组2019.7.21
- 2. Data transform
- 3. Groups comparison using diagnosis method 1 (Table 1 in paper!)
- 4. Groups comparison using diagnosis method 2
- 5. Treat p53 PGP9.5 etc as factors
- 6. Above but 2 groups
- 7. Heatmap of samples by 7 antibodies. (Figure 1 in paper!)
- 8. Autoantibody features correlation log2 transformed
- 9. Classification model using fast-and-frugal decision trees
- 10. Classification model without 7 add features using fast-and-frugal decision trees
1. Basic statistics for original 肺部结节组2019.7.21
2. Data transform
see Table 2 Clinical data reformated.csv only keep LUAD, LUSC, and Others.
3. Groups comparison using diagnosis method 1 (Table 1 in paper!)
4. Groups comparison using diagnosis method 2
5. Treat p53 PGP9.5 etc as factors
6. Above but 2 groups
7. Heatmap of samples by 7 antibodies. (Figure 1 in paper!)
### 7 supplyment. Heatmap of samples by 7 antibodies using original
value.
8. Autoantibody features correlation log2 transformed
9. Classification model using fast-and-frugal decision trees
LUAD decision tree:
LUSC decision tree:
Others decision tree:
10. Classification model without 7 add features using fast-and-frugal decision trees
LUAD decision tree:
LUSC decision tree:
Others decision tree:
