Todas las variables CALI Y PALMIRA

#factominer
library(bootstrap)
library(factoextra)
## Loading required package: ggplot2
## Welcome! Want to learn more? See two factoextra-related books at https://goo.gl/ve3WBa
library(FactoMineR)
library(haven)
library(ade4)
## 
## Attaching package: 'ade4'
## The following object is masked from 'package:FactoMineR':
## 
##     reconst
library(xtable)
library(readr)
library(data.table)
#library(ff)
#library(ffbase)
library(bigmemory)
library(foreach)
library(doParallel)
## Loading required package: iterators
## Loading required package: parallel
library(biglm)
## Loading required package: DBI
library(Factoshiny)
## Loading required package: shiny
## Loading required package: FactoInvestigate
library(readxl)
CaliyPalmira<-read_excel("C:/LAURA LUCIA/U/9/Tesis/MARZO/CaliyPalmira-TAINA.xlsx")

names(CaliyPalmira)
##  [1] "Total_act_sociales"     "Total_lug_act_sociales" "conoce_enf"            
##  [4] "p26"                    "S_sintomas"             "conoce_preven"         
##  [7] "S_prevención"           "creenvirus"             "contac_covid"          
## [10] "dx_covid"               "conf_presi"             "conf_alcaldia"         
## [13] "conf_gobern"            "conf_mensgobierno"      "p40"                   
## [16] "p42"                    "medios"                 "conf_mediocomu"        
## [19] "p46"                    "p47"                    "p48"                   
## [22] "p49"                    "p50_1"                  "p50_2"                 
## [25] "p50_3"                  "p51"                    "p52"                   
## [28] "p53"                    "p54"                    "p55"                   
## [31] "p56"                    "p57"                    "p58"                   
## [34] "p60"                    "cumple_lavamanos"       "cumple_tapaboca"       
## [37] "cumple_distancia"       "cumple_desinfecmano"    "Total_tapaboca"        
## [40] "Total_distancia"        "ID"                     "Municipio"
CaliyPalmira$creenvirus<-as.factor(CaliyPalmira$creenvirus)
CaliyPalmira$contac_covid<-as.factor(CaliyPalmira$contac_covid)
CaliyPalmira$dx_covid<-as.factor(CaliyPalmira$dx_covid)
names(CaliyPalmira)<-c(
  #1.voluntariedad
  "x11",
  "x12",
  #2.conocimiento
  "x21",
  "x22", #p26
  "x23",
  "x24",
  "x25", #p30
  #3.incertidumbre
  "x31", #p33
  "x32", #p35
  "x33", #p36
  #4.gubernamental
  "x41", 
  "x42", 
  "x43",
  "x44",#"recomen_efectiva",
  #5.salud
  "x51",
  #"p41", #factor
  "x52",
  #6.medios de comunicación
  "x61", #total_medios_comu
  "x62", #p43
  #"mensaje", #categórica p72
  #7.probabilidad de contagio
  "x71",
  "x72",
  "x73",
  "x74",
  "x75", 
  "x76",
  "x77",
  #8.severidad
  "x81",
  "x82",
  "x83",
  "x84",
  #9.susceptibilidad
  "x91", 
  "x92",
  "x93",
  "x94",
  #"p59_1", #factor
  #"p59_2", #factor
  #"p59_3", #factor
  #"p59_4", #factor
  "x95",
  #10.cumplimiento
  "x101", #p61
  "x102",
  "x103",
  "x104",
  "x105", #p76
  "x106",
  #otras
  "id",
  "Municipio"
)
#recodificar la voluntariedad
library(car)
## Loading required package: carData
summary(CaliyPalmira$x11) #de 0 a 5
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##   0.000   0.000   1.000   1.265   2.000   5.000
CaliyPalmira$x11 <- recode(CaliyPalmira$x11,"5=0; 4=1; 3=2; 2=3; 1=4; 0=5")
summary(CaliyPalmira$x12) #de 0 a 8
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##   0.000   1.000   1.000   1.633   2.000   8.000
CaliyPalmira$x12 <- recode(CaliyPalmira$x12,"8=0; 7=1; 6=2; 5=3; 4=4; 3=5; 2=6; 1=7; 0=8")
#x75 [23]
x75N<-as.factor(CaliyPalmira$x75)
summary(x75N)
##   1   2   3   4   5 
## 288  82 104 245 724
#x77 [25]
x77N<-as.factor(CaliyPalmira$x77)
summary(x77N)
##   1   2   3   4   5 
##  43  42 151 269 938

AFM CON TODAS LAS VARIABLES

##Análisis factorial múltiple
CaliyPalmira.FMA<-MFA(CaliyPalmira[,c(19:34)],
                      group=c(#2,
                              #5,
                              #3,
                              #4,
                              #2,
                              #2, #3
                              7,
                              4,
                              5
                              #6
                              ),
                      type=c(#'s',
                             #'s',
                             #'n',
                             #'s', #n
                             #'s',
                             #'s', #n
                             's',
                             's',
                             's'#,
                             #'s'
                             ),
                      name.group=c(#"Voluntariedad",
                                   #"Conocimiento",  
                                   #"Incertidumbre",
                                   #"Confianza gubernamental",
                                   #"Confianza sector salud",
                                   #"Confianza medios",
                                   "Probabilidad de contagio",
                                   "Severidad",
                                   "Susceptibilidad"), #,
                                   #"Cumplimiento"),
                      #num.group.sup=c(3),
                      graph=FALSE)

CaliyPalmira.FMA$eig
##         eigenvalue percentage of variance cumulative percentage of variance
## comp 1  1.95371969              37.354849                          37.35485
## comp 2  0.76278418              14.584328                          51.93918
## comp 3  0.46061251               8.806847                          60.74602
## comp 4  0.31307706               5.985990                          66.73201
## comp 5  0.27980231               5.349781                          72.08179
## comp 6  0.24472973               4.679198                          76.76099
## comp 7  0.21919631               4.191003                          80.95200
## comp 8  0.19355882               3.700818                          84.65281
## comp 9  0.16004627               3.060062                          87.71288
## comp 10 0.14217163               2.718302                          90.43118
## comp 11 0.11679648               2.233132                          92.66431
## comp 12 0.10867422               2.077836                          94.74215
## comp 13 0.08312730               1.589382                          96.33153
## comp 14 0.07144414               1.366002                          97.69753
## comp 15 0.06704119               1.281818                          98.97935
## comp 16 0.05338169               1.020651                         100.00000
CaliyPalmira.FMA$group$contrib
##                             Dim.1     Dim.2    Dim.3     Dim.4     Dim.5
## Probabilidad de contagio 22.07821 77.726865 15.65889 91.047532 84.042533
## Severidad                38.70329 13.287416 45.28145  6.939909  9.329046
## Susceptibilidad          39.21850  8.985719 39.05966  2.012559  6.628421
CaliyPalmira.FMA$group$correlation[,1:3]
##                              Dim.1     Dim.2     Dim.3
## Probabilidad de contagio 0.6636843 0.7801080 0.4438594
## Severidad                0.8746823 0.3278311 0.5848514
## Susceptibilidad          0.8775728 0.2757276 0.4690437
Coordenadas<-round(CaliyPalmira.FMA$quanti.var$coord[,c(1,2,3)],3);Coordenadas
##     Dim.1  Dim.2  Dim.3
## x71 0.534  0.705 -0.037
## x72 0.529  0.644 -0.040
## x73 0.531  0.659 -0.043
## x74 0.451  0.444  0.230
## x75 0.178  0.067  0.180
## x76 0.396  0.570  0.063
## x77 0.354 -0.037  0.365
## x81 0.608 -0.274  0.570
## x82 0.792 -0.295 -0.026
## x83 0.641 -0.310  0.494
## x84 0.810 -0.135  0.003
## x91 0.342 -0.197 -0.528
## x92 0.795 -0.165 -0.369
## x93 0.793 -0.182 -0.252
## x94 0.818 -0.177 -0.297
## x95 0.652 -0.300 -0.117
Contribu<-round(CaliyPalmira.FMA$quanti.var$contrib[,c(1,2,3)],3);Contribu
##      Dim.1  Dim.2  Dim.3
## x71  4.620 20.610  0.094
## x72  4.527 17.215  0.109
## x73  4.562 18.004  0.128
## x74  3.287  8.178  3.647
## x75  0.516  0.187  2.237
## x76  2.533 13.476  0.271
## x77  2.034  0.057  9.172
## x81  6.924  3.594 25.829
## x82 11.764  4.187  0.055
## x83  7.713  4.627 19.396
## x84 12.301  0.880  0.001
## x91  1.851  1.583 18.745
## x92 10.029  1.113  9.175
## x93  9.969  1.351  4.290
## x94 10.615  1.276  5.929
## x95  6.755  3.664  0.920
Tabla<-cbind(Coordenadas,Contribu);Tabla
##     Dim.1  Dim.2  Dim.3  Dim.1  Dim.2  Dim.3
## x71 0.534  0.705 -0.037  4.620 20.610  0.094
## x72 0.529  0.644 -0.040  4.527 17.215  0.109
## x73 0.531  0.659 -0.043  4.562 18.004  0.128
## x74 0.451  0.444  0.230  3.287  8.178  3.647
## x75 0.178  0.067  0.180  0.516  0.187  2.237
## x76 0.396  0.570  0.063  2.533 13.476  0.271
## x77 0.354 -0.037  0.365  2.034  0.057  9.172
## x81 0.608 -0.274  0.570  6.924  3.594 25.829
## x82 0.792 -0.295 -0.026 11.764  4.187  0.055
## x83 0.641 -0.310  0.494  7.713  4.627 19.396
## x84 0.810 -0.135  0.003 12.301  0.880  0.001
## x91 0.342 -0.197 -0.528  1.851  1.583 18.745
## x92 0.795 -0.165 -0.369 10.029  1.113  9.175
## x93 0.793 -0.182 -0.252  9.969  1.351  4.290
## x94 0.818 -0.177 -0.297 10.615  1.276  5.929
## x95 0.652 -0.300 -0.117  6.755  3.664  0.920
plot.MFA(CaliyPalmira.FMA, choix="group",title="Representación de grupos")

#plot.MFA(CaliyPalmira.FMA, choix="ind",lab.par=FALSE)
library(ggrepel)
options(ggrepel.max.overlaps = Inf)
#dim 1-2
plot.MFA(CaliyPalmira.FMA, choix="var",habillage='group',title="Círculo de correlación", repel = TRUE)

IPRG

#--------------------------ÍNDICE DE PERCEPCIÓN GLOBAL-----------------------------------------------#####

res.mfa_severidad=CaliyPalmira.FMA

#Datos
Severidad=CaliyPalmira[,c(19:34)]

Coord1_severidad <-res.mfa_severidad$global.pca$var$coord[,1];Coord1_severidad
##       x71       x72       x73       x74       x75       x76       x77       x81 
## 0.5341653 0.5287287 0.5308074 0.4505285 0.1784305 0.3955389 0.3544335 0.6076142 
##       x82       x83       x84       x91       x92       x93       x94       x95 
## 0.7919927 0.6412808 0.8098680 0.3415608 0.7949994 0.7926213 0.8178959 0.6524851
lp_severidad<-res.mfa_severidad$eig[1];lp_severidad #VALOR PROPIO
## [1] 1.95372
Vp_severidad<-Coord1_severidad/sqrt(lp_severidad);Vp_severidad #VECTOR PROPIO
##       x71       x72       x73       x74       x75       x76       x77       x81 
## 0.3821594 0.3782699 0.3797571 0.3223229 0.1276550 0.2829815 0.2535734 0.4347071 
##       x82       x83       x84       x91       x92       x93       x94       x95 
## 0.5666176 0.4587934 0.5794061 0.2443638 0.5687687 0.5670673 0.5851496 0.4668093
Pesos_severidad<-(Vp_severidad/sum(Vp_severidad));Pesos_severidad # PESOS RELATIVOS DE LAS VARIABLES
##        x71        x72        x73        x74        x75        x76        x77 
## 0.05791696 0.05732750 0.05755288 0.04884863 0.01934636 0.04288637 0.03842951 
##        x81        x82        x83        x84        x91        x92        x93 
## 0.06588067 0.08587194 0.06953098 0.08781007 0.03703379 0.08619794 0.08594010 
##        x94        x95 
## 0.08868050 0.07074581
sum(Pesos_severidad)
## [1] 1
data.frame(round(Pesos_severidad,3))
##     round.Pesos_severidad..3.
## x71                     0.058
## x72                     0.057
## x73                     0.058
## x74                     0.049
## x75                     0.019
## x76                     0.043
## x77                     0.038
## x81                     0.066
## x82                     0.086
## x83                     0.070
## x84                     0.088
## x91                     0.037
## x92                     0.086
## x93                     0.086
## x94                     0.089
## x95                     0.071
res.mfa_severidad$eig
##         eigenvalue percentage of variance cumulative percentage of variance
## comp 1  1.95371969              37.354849                          37.35485
## comp 2  0.76278418              14.584328                          51.93918
## comp 3  0.46061251               8.806847                          60.74602
## comp 4  0.31307706               5.985990                          66.73201
## comp 5  0.27980231               5.349781                          72.08179
## comp 6  0.24472973               4.679198                          76.76099
## comp 7  0.21919631               4.191003                          80.95200
## comp 8  0.19355882               3.700818                          84.65281
## comp 9  0.16004627               3.060062                          87.71288
## comp 10 0.14217163               2.718302                          90.43118
## comp 11 0.11679648               2.233132                          92.66431
## comp 12 0.10867422               2.077836                          94.74215
## comp 13 0.08312730               1.589382                          96.33153
## comp 14 0.07144414               1.366002                          97.69753
## comp 15 0.06704119               1.281818                          98.97935
## comp 16 0.05338169               1.020651                         100.00000
Ind_severidad<-as.matrix(Severidad)%*%Pesos_severidad
Imin_severidad<-min(Ind_severidad);Imin_severidad
## [1] 0.9629662
Imax_severidad<-max(Ind_severidad);Imax_severidad
## [1] 6.613507
Ind_2_severidad<-round(((Ind_severidad-Imin_severidad)/(Imax_severidad-Imin_severidad))*100,2) #con este índice se hace el cluster
min(Ind_2_severidad)
## [1] 0
max(Ind_2_severidad)
## [1] 100
C8<-cbind(Ind_2_severidad,CaliyPalmira)

summary(C8$Ind_2_severidad);sd(C8$Ind_2_severidad)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    0.00   41.24   53.47   54.10   66.20  100.00
## [1] 17.83391

K-means

set.seed(1234)
kmeans <- kmeans(C8$Ind_2_severidad, 3, iter.max = 1000, nstart = 10);kmeans
## K-means clustering with 3 clusters of sizes 646, 433, 364
## 
## Cluster means:
##       [,1]
## 1 54.69625
## 2 33.72363
## 3 77.28025
## 
## Clustering vector:
##    [1] 2 2 1 1 1 3 2 1 1 2 1 2 1 1 1 1 2 1 3 1 3 2 2 2 1 2 2 1 2 1 1 1 2 3 1 2 1
##   [38] 3 3 1 3 2 1 1 1 2 2 2 2 1 2 2 2 3 1 1 2 1 2 2 3 2 2 2 1 1 1 1 3 3 1 2 1 2
##   [75] 2 1 2 1 3 1 3 1 1 1 2 3 2 2 3 1 2 1 1 1 2 3 1 2 2 1 3 2 2 1 3 3 3 3 1 1 3
##  [112] 3 1 3 2 2 2 1 2 1 3 3 1 1 2 1 3 1 3 2 3 1 3 2 1 2 2 3 1 2 3 1 1 1 2 1 1 2
##  [149] 1 1 2 2 3 1 3 2 1 1 1 3 1 3 1 1 1 3 1 2 3 2 3 3 1 2 1 1 2 1 1 1 3 2 3 2 3
##  [186] 1 2 1 1 1 1 1 2 2 3 2 1 1 2 1 2 1 1 3 1 3 1 1 2 3 3 2 1 1 1 1 1 3 2 3 1 1
##  [223] 1 1 1 2 1 2 2 1 3 1 1 1 1 2 2 1 2 2 1 1 1 2 2 2 1 3 2 3 2 2 1 1 1 2 1 2 3
##  [260] 1 3 1 1 2 2 1 2 1 1 2 3 2 2 2 2 1 1 3 3 1 1 1 3 1 2 1 3 2 1 1 1 1 2 1 2 2
##  [297] 2 1 1 3 2 1 2 2 3 1 2 1 1 3 1 3 2 2 1 1 1 2 3 2 1 1 2 2 1 3 3 2 1 2 1 1 3
##  [334] 3 1 2 1 3 2 2 2 1 1 2 1 2 2 1 1 3 3 1 2 1 1 2 3 2 2 3 1 3 2 2 1 2 3 2 3 2
##  [371] 1 1 3 1 3 1 3 2 2 1 1 3 2 3 3 1 3 2 2 1 2 2 1 2 1 1 2 1 2 2 1 2 2 2 1 2 2
##  [408] 2 1 1 3 1 2 1 1 3 1 1 2 1 1 2 3 3 3 1 3 1 1 1 1 3 2 2 3 3 1 2 1 2 2 2 1 3
##  [445] 2 2 3 1 3 3 1 3 3 1 1 1 1 3 1 3 2 1 1 2 1 1 1 1 3 1 3 1 2 3 1 1 3 1 1 1 2
##  [482] 3 1 1 1 2 3 3 3 2 1 1 2 2 3 1 1 1 1 3 2 3 1 2 1 1 1 2 2 2 2 1 1 1 2 2 3 1
##  [519] 2 2 2 3 2 2 1 1 3 2 2 1 1 2 1 1 1 2 2 2 1 2 2 1 3 1 3 1 1 1 1 2 1 3 1 2 2
##  [556] 3 2 2 1 2 2 2 1 2 1 2 1 2 1 2 1 3 1 1 2 1 2 1 1 1 1 1 1 2 2 2 2 1 2 1 1 2
##  [593] 1 1 1 1 1 2 1 1 1 1 1 2 2 2 1 2 1 3 2 1 1 3 1 3 2 3 3 2 3 3 2 1 1 1 1 3 2
##  [630] 2 3 1 2 3 1 1 2 3 2 2 2 2 1 1 2 1 1 1 2 3 3 3 1 1 1 3 1 3 1 1 3 2 3 1 3 1
##  [667] 2 1 2 1 3 1 3 1 3 1 1 2 3 1 1 1 1 1 1 2 2 1 2 1 2 1 1 1 3 1 3 1 3 2 2 1 1
##  [704] 1 3 3 1 1 2 1 1 3 2 2 1 1 2 1 1 1 1 2 1 1 1 3 1 2 1 2 2 1 2 1 1 2 2 1 1 1
##  [741] 1 3 3 3 1 3 1 3 1 1 3 1 3 3 1 1 3 1 1 1 1 1 2 2 1 2 1 2 1 2 1 3 3 3 2 1 2
##  [778] 1 1 3 3 1 1 1 3 2 1 1 2 3 1 1 1 3 2 3 2 1 2 2 1 3 2 2 1 1 3 3 2 2 2 1 3 3
##  [815] 1 1 3 1 1 1 2 1 2 2 1 1 1 1 3 1 2 1 3 1 3 3 2 3 1 1 1 2 3 1 1 1 1 1 1 3 1
##  [852] 1 2 3 3 1 2 1 1 2 3 2 1 3 3 2 1 3 1 2 1 1 1 2 3 3 2 3 2 1 1 3 1 2 1 1 1 3
##  [889] 1 2 2 2 1 3 1 2 1 2 2 1 1 2 2 2 3 3 2 3 2 1 1 1 2 1 1 3 1 3 1 1 1 1 2 1 1
##  [926] 3 1 1 2 3 1 2 1 3 1 2 3 1 2 3 2 2 3 3 3 1 1 2 2 3 3 3 3 1 1 3 2 3 2 1 3 1
##  [963] 2 2 2 2 1 1 1 3 3 1 1 3 3 2 3 1 3 1 1 2 2 2 2 2 1 1 3 3 3 3 2 2 1 2 1 3 1
## [1000] 1 2 2 3 3 3 1 3 1 1 1 2 1 2 3 3 1 2 2 3 3 2 3 1 3 1 1 2 3 3 2 1 3 3 2 3 1
## [1037] 2 2 1 2 2 3 1 3 3 3 3 1 2 3 1 2 1 1 3 1 3 1 1 1 1 2 1 2 3 2 3 3 1 1 3 1 2
## [1074] 2 1 2 1 3 1 2 3 1 1 1 3 3 1 1 2 2 1 1 3 2 3 2 2 2 2 3 2 1 3 2 1 2 1 3 1 3
## [1111] 1 1 1 1 3 1 3 2 2 1 1 1 2 3 1 3 1 1 1 1 2 1 1 1 3 1 3 3 1 1 2 2 2 1 1 3 2
## [1148] 3 1 3 2 1 1 3 1 2 2 1 1 2 1 3 1 1 2 2 1 3 3 2 2 2 1 2 1 2 1 3 1 1 2 1 2 2
## [1185] 2 2 3 2 1 1 3 1 2 2 1 1 1 1 1 1 3 1 2 3 3 2 2 3 3 2 3 2 1 1 3 2 3 3 2 3 2
## [1222] 2 2 3 3 3 3 1 1 1 1 3 1 3 1 1 1 1 2 1 1 3 3 3 2 3 3 3 1 1 3 1 3 1 3 1 2 1
## [1259] 1 1 2 3 3 3 3 3 2 1 1 1 2 1 2 1 2 1 3 2 3 2 2 2 3 3 2 3 1 2 3 1 3 3 1 3 2
## [1296] 1 3 1 2 3 1 2 2 1 1 3 3 1 3 1 3 1 1 1 1 3 1 3 2 2 3 2 3 1 3 1 1 3 3 3 3 2
## [1333] 3 3 3 3 1 3 2 3 1 1 1 3 1 2 3 1 3 2 3 1 2 1 2 2 3 3 2 1 3 2 3 1 1 2 2 3 1
## [1370] 1 2 2 1 1 2 1 1 1 1 2 3 3 3 3 2 1 3 2 1 2 1 1 1 1 1 2 1 1 3 2 3 2 2 1 2 3
## [1407] 1 1 2 1 1 1 1 1 2 3 3 1 1 2 3 1 1 1 1 1 3 3 1 1 3 1 3 1 1 3 1 2 1 1 1 3 1
## 
## Within cluster sum of squares by cluster:
## [1] 23747.37 32212.71 27070.04
##  (between_SS / total_SS =  81.9 %)
## 
## Available components:
## 
## [1] "cluster"      "centers"      "totss"        "withinss"     "tot.withinss"
## [6] "betweenss"    "size"         "iter"         "ifault"
#windows();fviz_cluster(kmeans, data = C8)

C8$cluster <- kmeans$cluster
summary(C8)
##  Ind_2_severidad       x11             x12             x21       
##  Min.   :  0.00   Min.   :0.000   Min.   :0.000   Min.   :1.000  
##  1st Qu.: 41.24   1st Qu.:3.000   1st Qu.:6.000   1st Qu.:5.000  
##  Median : 53.47   Median :4.000   Median :7.000   Median :5.000  
##  Mean   : 54.10   Mean   :3.735   Mean   :6.367   Mean   :5.375  
##  3rd Qu.: 66.20   3rd Qu.:5.000   3rd Qu.:7.000   3rd Qu.:6.000  
##  Max.   :100.00   Max.   :5.000   Max.   :8.000   Max.   :7.000  
##       x22             x23             x24             x25             x31      
##  Min.   :1.000   Min.   :0.000   Min.   :1.000   Min.   :0.000   No     :  21  
##  1st Qu.:3.000   1st Qu.:7.000   1st Qu.:5.000   1st Qu.:6.000   No sabe:  20  
##  Median :4.000   Median :8.000   Median :6.000   Median :7.000   Si     :1402  
##  Mean   :3.633   Mean   :7.319   Mean   :5.796   Mean   :6.517                 
##  3rd Qu.:4.000   3rd Qu.:8.000   3rd Qu.:7.000   3rd Qu.:7.000                 
##  Max.   :4.000   Max.   :8.000   Max.   :7.000   Max.   :7.000                 
##       x32      x33           x41             x42             x43      
##  No     :702   0:   7   Min.   :1.000   Min.   :1.000   Min.   :1.00  
##  No sabe:124   1:1303   1st Qu.:2.000   1st Qu.:3.000   1st Qu.:3.00  
##  Si     :617   2: 133   Median :4.000   Median :4.000   Median :4.00  
##                         Mean   :3.671   Mean   :3.773   Mean   :3.96  
##                         3rd Qu.:5.000   3rd Qu.:5.000   3rd Qu.:5.00  
##                         Max.   :7.000   Max.   :7.000   Max.   :7.00  
##       x44            x51             x52             x61             x62      
##  Min.   :1.00   Min.   :1.000   Min.   :1.000   Min.   :0.000   Min.   :1.00  
##  1st Qu.:2.00   1st Qu.:3.000   1st Qu.:4.000   1st Qu.:1.000   1st Qu.:2.00  
##  Median :3.00   Median :5.000   Median :5.000   Median :2.000   Median :4.00  
##  Mean   :3.45   Mean   :4.459   Mean   :5.252   Mean   :2.256   Mean   :3.43  
##  3rd Qu.:5.00   3rd Qu.:6.000   3rd Qu.:6.000   3rd Qu.:3.000   3rd Qu.:5.00  
##  Max.   :7.00   Max.   :7.000   Max.   :7.000   Max.   :6.000   Max.   :7.00  
##       x71             x72             x73             x74       
##  Min.   :1.000   Min.   :1.000   Min.   :1.000   Min.   :1.000  
##  1st Qu.:3.000   1st Qu.:4.000   1st Qu.:3.000   1st Qu.:5.000  
##  Median :4.000   Median :5.000   Median :4.000   Median :6.000  
##  Mean   :4.283   Mean   :4.578   Mean   :4.112   Mean   :5.415  
##  3rd Qu.:5.000   3rd Qu.:6.000   3rd Qu.:5.000   3rd Qu.:6.000  
##  Max.   :7.000   Max.   :7.000   Max.   :7.000   Max.   :7.000  
##       x75             x76             x77             x81       
##  Min.   :1.000   Min.   :1.000   Min.   :1.000   Min.   :1.000  
##  1st Qu.:2.000   1st Qu.:2.500   1st Qu.:4.000   1st Qu.:4.000  
##  Median :5.000   Median :3.000   Median :5.000   Median :5.000  
##  Mean   :3.717   Mean   :3.286   Mean   :4.398   Mean   :4.995  
##  3rd Qu.:5.000   3rd Qu.:4.000   3rd Qu.:5.000   3rd Qu.:6.000  
##  Max.   :5.000   Max.   :5.000   Max.   :5.000   Max.   :7.000  
##       x82             x83             x84           x91         
##  Min.   :1.000   Min.   :1.000   Min.   :1.0   Min.   : 0.0000  
##  1st Qu.:3.000   1st Qu.:3.000   1st Qu.:3.0   1st Qu.: 0.0000  
##  Median :4.000   Median :4.000   Median :4.0   Median : 0.0000  
##  Mean   :4.084   Mean   :4.236   Mean   :3.9   Mean   : 0.6189  
##  3rd Qu.:5.000   3rd Qu.:5.000   3rd Qu.:5.0   3rd Qu.: 1.0000  
##  Max.   :7.000   Max.   :7.000   Max.   :7.0   Max.   :13.0000  
##       x92             x93             x94             x95       
##  Min.   :1.000   Min.   :1.000   Min.   :1.000   Min.   :1.000  
##  1st Qu.:2.000   1st Qu.:2.000   1st Qu.:2.500   1st Qu.:3.000  
##  Median :4.000   Median :4.000   Median :4.000   Median :5.000  
##  Mean   :3.625   Mean   :3.685   Mean   :3.743   Mean   :4.604  
##  3rd Qu.:5.000   3rd Qu.:5.000   3rd Qu.:5.000   3rd Qu.:6.000  
##  Max.   :7.000   Max.   :7.000   Max.   :7.000   Max.   :7.000  
##       x101            x102            x103            x104      
##  Min.   :1.000   Min.   :1.000   Min.   :1.000   Min.   :1.000  
##  1st Qu.:4.000   1st Qu.:4.000   1st Qu.:4.000   1st Qu.:4.000  
##  Median :5.000   Median :5.000   Median :4.000   Median :5.000  
##  Mean   :4.426   Mean   :4.639   Mean   :4.131   Mean   :4.516  
##  3rd Qu.:5.000   3rd Qu.:5.000   3rd Qu.:5.000   3rd Qu.:5.000  
##  Max.   :5.000   Max.   :5.000   Max.   :5.000   Max.   :5.000  
##       x105             x106              id         Municipio        
##  Min.   : 0.000   Min.   : 0.000   Min.   :  1.0   Length:1443       
##  1st Qu.: 4.000   1st Qu.: 2.000   1st Qu.:182.5   Class :character  
##  Median : 9.000   Median : 6.000   Median :366.0   Mode  :character  
##  Mean   : 8.069   Mean   : 5.881   Mean   :370.4                     
##  3rd Qu.:12.000   3rd Qu.:10.000   3rd Qu.:549.5                     
##  Max.   :14.000   Max.   :12.000   Max.   :814.0                     
##     cluster     
##  Min.   :1.000  
##  1st Qu.:1.000  
##  Median :2.000  
##  Mean   :1.805  
##  3rd Qu.:3.000  
##  Max.   :3.000
kmeans$centers
##       [,1]
## 1 54.69625
## 2 33.72363
## 3 77.28025
sum(kmeans$cluster==1)/1443#bajo
## [1] 0.4476784
sum(kmeans$cluster==2)/1443#alto
## [1] 0.3000693
sum(kmeans$cluster==3)/1443#medio
## [1] 0.2522523
tapply(Ind_2_severidad,kmeans$cluster,summary)
## $`1`
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##   44.26   49.44   54.52   54.70   59.80   65.94 
## 
## $`2`
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    0.00   29.76   35.91   33.72   40.02   44.17 
## 
## $`3`
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##   66.05   70.30   75.33   77.28   82.27  100.00

ECM

#Nfinal<-c()
NfinalMedia<-c() ##En este vector se estan almacenando las proporciones, osea, cada repeticion bootstrap
for (i in 1:1000) {
  N1=CaliyPalmira[,c(19:34)]
  Severidad=N1[sample(nrow(N1),size = 1155,replace = TRUE),]
  res.mfa_severidad=CaliyPalmira.FMA
  #Datos
  Coord1_severidad <-res.mfa_severidad$global.pca$var$coord[,c(1)];Coord1_severidad
  lp_severidad<-res.mfa_severidad$eig[c(1)];lp_severidad #VALOR PROPIO
  Vp_severidad<-Coord1_severidad/sqrt(lp_severidad);Vp_severidad #VECTOR PROPIO
  Pesos_severidad<-(Vp_severidad/sum(Vp_severidad));Pesos_severidad # PESOS RELATIVOS DE LAS VARIABLES
  data.frame(round(Pesos_severidad,3))
  Ind_severidad<-as.matrix(Severidad)%*%Pesos_severidad
  Imin_severidad<-min(Ind_severidad);Imin_severidad
  Imax_severidad<-max(Ind_severidad);Imax_severidad
  Ind_2_severidad<-round(((Ind_severidad-Imin_severidad)/(Imax_severidad-Imin_severidad))*100,2) #con este índice se hace el cluster
  NfinalMedia[i]=median(Ind_2_severidad)

  }; NfinalMedia
##    [1] 53.75 54.54 52.41 54.17 52.33 53.60 53.73 53.31 53.08 53.75 54.14 52.99
##   [13] 53.82 54.18 53.16 53.16 53.25 54.84 53.70 54.29 53.62 53.53 54.25 53.32
##   [25] 52.06 52.42 53.54 54.55 52.76 53.85 52.14 54.18 51.73 53.91 52.93 53.83
##   [37] 54.68 54.52 54.44 52.99 54.06 53.62 52.95 53.70 54.61 52.96 53.53 53.08
##   [49] 52.74 53.18 53.11 53.97 51.53 50.06 52.56 53.08 52.76 53.04 53.81 53.81
##   [61] 50.86 54.44 53.06 52.05 51.58 52.03 51.28 53.06 53.32 51.06 54.56 53.70
##   [73] 53.20 50.97 53.48 53.29 52.57 54.29 52.03 53.81 53.16 52.83 54.15 50.58
##   [85] 52.18 55.21 50.96 54.71 53.67 53.49 52.67 51.93 53.70 53.40 54.15 54.61
##   [97] 52.63 54.17 54.50 53.67 52.69 53.18 53.32 53.16 54.76 53.52 53.46 52.02
##  [109] 53.46 52.84 52.67 52.10 52.98 54.12 54.80 53.32 53.39 52.47 53.75 54.18
##  [121] 54.31 53.49 54.42 53.46 52.40 53.55 54.18 51.28 53.92 52.94 53.18 54.29
##  [133] 53.70 52.92 54.32 54.48 53.62 52.46 54.92 54.18 53.27 53.18 54.44 54.14
##  [145] 52.83 52.59 52.93 53.11 51.49 52.05 53.20 52.61 53.49 53.46 54.64 54.17
##  [157] 53.51 53.67 54.56 53.47 53.48 52.95 52.83 52.94 54.31 53.53 52.71 53.67
##  [169] 53.40 53.75 54.47 54.61 50.97 51.32 53.94 52.76 54.31 53.67 51.79 53.20
##  [181] 53.31 53.32 53.21 54.45 53.53 54.41 52.63 53.12 53.39 54.29 53.60 50.73
##  [193] 53.49 52.63 54.44 54.02 54.02 53.08 53.48 53.92 53.31 54.06 52.99 54.06
##  [205] 53.60 50.46 54.47 52.41 53.67 52.18 54.32 53.06 53.40 54.56 54.18 54.54
##  [217] 53.67 53.31 52.86 53.31 52.84 52.76 53.49 52.59 52.94 53.49 53.04 53.76
##  [229] 53.08 53.52 53.21 52.63 50.46 52.76 54.17 53.73 51.72 51.51 51.12 54.29
##  [241] 54.41 53.76 53.81 53.46 54.17 53.49 54.41 53.83 53.85 53.49 52.57 54.29
##  [253] 52.95 52.91 53.76 51.59 53.32 53.46 52.31 51.19 55.86 52.35 52.18 53.79
##  [265] 52.95 53.52 54.10 54.02 52.86 51.16 52.83 51.42 52.95 53.20 53.51 53.60
##  [277] 54.47 54.95 53.48 52.94 54.47 53.32 53.49 54.32 53.47 53.32 53.75 52.84
##  [289] 52.92 53.70 52.76 54.42 53.11 52.91 52.86 53.06 53.65 54.25 53.85 49.04
##  [301] 52.82 54.31 53.92 53.75 53.40 52.69 53.70 53.54 53.40 53.39 52.69 52.83
##  [313] 55.02 52.84 53.53 54.61 54.18 51.98 52.63 53.49 52.09 54.18 53.27 53.48
##  [325] 53.66 53.67 53.47 52.65 53.19 52.47 53.75 53.28 51.93 54.95 53.06 53.18
##  [337] 53.47 53.39 53.62 53.95 51.10 53.08 53.31 54.29 52.46 52.37 54.81 53.47
##  [349] 53.67 54.48 55.27 52.94 53.40 53.27 54.15 52.58 53.32 52.76 54.29 53.77
##  [361] 51.99 54.44 53.60 53.31 51.71 53.76 53.11 53.70 53.13 51.30 52.63 53.91
##  [373] 53.70 53.32 52.26 53.47 53.67 54.06 53.13 53.05 54.18 53.48 54.31 51.96
##  [385] 51.47 54.31 53.08 53.75 53.66 51.77 53.52 53.52 52.54 51.28 54.44 53.46
##  [397] 53.83 51.61 53.53 53.06 52.92 53.39 53.54 53.70 52.61 53.82 53.76 53.70
##  [409] 52.19 54.85 53.60 53.83 51.31 53.06 53.70 50.74 53.53 54.15 54.15 53.48
##  [421] 52.98 53.82 50.41 53.20 53.91 54.14 53.40 52.13 52.00 52.57 53.08 54.06
##  [433] 53.47 54.14 53.47 51.44 53.32 53.24 50.47 54.45 54.32 53.47 54.76 51.11
##  [445] 53.62 53.27 53.62 53.56 53.46 52.00 53.07 53.46 52.83 52.53 53.32 53.86
##  [457] 53.47 52.09 53.92 54.47 53.29 52.37 53.92 52.47 53.40 54.45 52.45 53.73
##  [469] 54.65 53.83 52.94 52.65 52.67 53.85 53.21 53.67 53.83 53.81 53.91 53.39
##  [481] 53.40 53.11 52.76 53.40 53.16 51.10 53.60 53.52 53.48 51.00 52.92 53.21
##  [493] 53.62 49.77 53.66 53.82 53.54 53.73 52.63 53.48 53.08 53.82 54.18 53.53
##  [505] 52.84 53.73 53.46 52.84 52.18 54.15 54.76 53.88 53.53 53.62 51.58 53.49
##  [517] 52.84 55.31 52.53 53.70 54.32 54.15 53.67 52.02 53.62 53.75 53.54 53.75
##  [529] 53.43 53.52 52.92 53.75 53.16 54.02 53.27 54.02 54.02 52.77 52.58 53.62
##  [541] 53.49 53.54 54.06 53.20 53.89 52.86 53.81 53.56 52.99 53.67 53.27 52.47
##  [553] 52.67 52.86 53.40 52.83 54.71 52.02 53.46 53.43 52.28 54.17 52.22 53.53
##  [565] 52.63 54.18 53.40 53.85 53.52 52.90 53.40 52.35 52.67 53.06 54.61 51.83
##  [577] 51.85 53.62 53.27 53.70 51.53 53.54 51.75 53.27 53.30 51.98 53.39 52.26
##  [589] 55.04 52.63 53.21 53.62 53.83 53.55 53.92 53.20 53.40 54.18 52.26 54.00
##  [601] 53.49 53.40 52.05 53.11 53.49 50.60 54.54 52.69 53.49 54.06 53.62 54.15
##  [613] 53.40 53.49 52.10 53.18 53.95 53.20 53.53 53.40 54.76 52.71 53.47 52.97
##  [625] 54.80 52.35 53.41 53.11 53.40 53.70 53.40 54.68 53.11 47.74 53.27 53.20
##  [637] 53.94 54.18 53.46 53.11 53.53 53.49 53.39 53.12 53.46 53.48 52.59 52.77
##  [649] 53.91 53.97 52.76 53.49 53.60 51.10 53.53 53.46 53.06 54.76 53.32 54.29
##  [661] 53.49 53.83 53.48 54.32 53.62 54.14 52.65 53.83 53.79 51.59 51.09 54.53
##  [673] 50.70 53.49 53.29 52.63 55.03 53.73 53.43 53.76 52.83 52.14 53.75 53.01
##  [685] 54.41 51.98 54.65 53.11 53.62 50.81 53.48 54.41 50.98 52.83 52.67 53.62
##  [697] 54.18 53.31 54.06 52.28 53.85 54.15 53.53 53.92 53.75 53.40 54.29 54.80
##  [709] 52.30 52.69 53.67 53.83 51.00 52.57 53.87 52.02 53.49 53.51 53.47 53.05
##  [721] 53.67 54.26 54.48 54.29 53.62 53.54 53.92 53.60 52.27 54.06 52.71 53.91
##  [733] 54.31 52.63 51.80 53.32 54.44 52.95 49.48 54.31 53.46 53.62 52.56 53.49
##  [745] 54.97 50.76 51.83 51.93 53.18 53.87 52.91 54.45 50.59 51.06 53.53 53.62
##  [757] 52.71 54.41 53.46 52.59 52.46 54.47 53.49 53.49 52.47 53.21 52.86 53.49
##  [769] 53.85 51.62 54.17 51.98 51.15 51.59 54.18 52.35 53.70 53.67 52.63 53.60
##  [781] 54.18 54.54 54.29 53.27 53.55 54.17 53.52 52.67 54.06 54.70 52.47 54.45
##  [793] 54.71 54.18 52.59 52.82 53.73 52.76 53.52 53.66 54.50 53.67 54.15 53.18
##  [805] 54.06 53.27 53.31 53.85 51.66 52.53 54.14 53.70 50.49 54.06 53.47 53.49
##  [817] 55.73 53.62 53.81 52.30 49.65 54.81 51.43 53.49 53.48 53.91 53.67 52.89
##  [829] 53.49 51.20 51.82 53.73 54.29 54.66 54.47 53.08 53.27 52.63 52.93 54.14
##  [841] 53.46 52.61 53.73 52.67 51.51 53.31 52.69 52.46 53.21 53.97 53.10 54.56
##  [853] 53.20 52.61 51.14 53.52 53.11 53.85 53.40 53.46 52.71 54.39 54.54 52.48
##  [865] 53.51 53.21 54.18 53.82 54.52 52.94 54.31 53.82 53.76 54.14 54.06 54.06
##  [877] 53.89 52.61 53.75 53.82 53.04 52.67 54.61 52.86 53.04 53.40 53.48 52.83
##  [889] 52.59 53.73 52.76 54.18 52.61 51.77 54.91 54.29 53.53 53.40 52.42 54.80
##  [901] 52.94 53.83 53.46 52.98 53.53 53.49 54.55 54.18 53.67 53.32 52.95 51.81
##  [913] 53.21 53.70 52.18 52.94 53.47 53.85 54.26 53.41 53.91 52.61 51.73 52.86
##  [925] 52.94 53.18 53.49 53.40 53.11 54.97 53.18 52.92 52.69 53.32 53.54 52.94
##  [937] 53.46 54.05 54.67 53.06 53.21 53.20 54.18 53.48 54.95 53.20 53.18 53.49
##  [949] 54.50 53.16 53.46 52.53 53.11 53.56 52.92 53.27 53.21 53.46 54.12 52.92
##  [961] 53.75 51.33 53.08 53.91 54.95 52.63 53.04 53.55 54.44 52.26 53.18 52.76
##  [973] 52.01 54.50 52.18 54.41 51.95 53.66 53.11 52.71 53.16 54.32 54.15 51.53
##  [985] 53.47 54.39 53.70 54.76 50.61 52.10 51.98 53.52 52.30 54.71 53.91 53.20
##  [997] 54.17 54.54 52.47 52.37
x11();hist(NfinalMedia)

I_mediana=round(median(NfinalMedia,3));I_mediana

## [1] 53
#EE=I_referencia-I_mediana;EE
EE<-round((1/1000)*sum((NfinalMedia-I_mediana)^2+((1/1000)*sum(NfinalMedia)-I_mediana)^2),2);EE
## [1] 1.05

Índices por separado

Probabilidad de contagio

#-----------------------------------probabilidad de contagio-----------------------------------
Proba<-CaliyPalmira.FMA$separate.analyses$`Probabilidad de contagio`$ind$coord[,1]

Imin_Proba<-min(Proba);Imin_Proba
## [1] -5.561753
Imax_Proba<-max(Proba);Imax_Proba
## [1] 3.500155
Ind_2_Proba<-round(((Proba-Imin_Proba)/(Imax_Proba-Imin_Proba))*100,2) #con este índice se hace el cluster
min(Ind_2_Proba)
## [1] 0
max(Ind_2_Proba)
## [1] 100
C8<-cbind(Ind_2_Proba,CaliyPalmira)
summary(C8$Ind_2_Proba);sd(C8$Ind_2_Proba)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    0.00   48.23   60.96   61.38   74.47  100.00
## [1] 19.62697

Severidad

#-----------------------------------severidad-----------------------------------
Sev<-CaliyPalmira.FMA$separate.analyses$Severidad$ind$coord[,1]

Imin_Sev<-min(Sev);Imin_Sev
## [1] -4.142719
Imax_Sev<-max(Sev);Imax_Sev
## [1] 3.366186
Ind_2_Sev<-round(((Sev-Imin_Sev)/(Imax_Sev-Imin_Sev))*100,2) #con este índice se hace el cluster
min(Ind_2_Sev)
## [1] 0
max(Ind_2_Sev)
## [1] 100
sd(Ind_2_Sev)
## [1] 22.00786
#rbind(summary(Ind_2_Sev))
#print(xtable(rbind(summary(Ind_2_Sev))), include.rownames = FALSE)
C8<-cbind(Ind_2_Sev,CaliyPalmira)
summary(C8$Ind_2_Sev)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    0.00   41.66   54.28   55.17   70.83  100.00

Susceptibilidad

#-----------------------------------susceptibilidad-----------------------------------
SU<-CaliyPalmira.FMA$separate.analyses$Susceptibilidad$ind$coord[,1]

Imin_SU<-min(SU);Imin_SU
## [1] -3.522199
Imax_SU<-max(SU);Imax_SU
## [1] 6.746319
Ind_2_SU<-round(((SU-Imin_SU)/(Imax_SU-Imin_SU))*100,2) #con este índice se hace el cluster
min(Ind_2_SU)
## [1] 0
max(Ind_2_SU)
## [1] 100
sd(Ind_2_SU)
## [1] 17.49717
#rbind(summary(Ind_2_SU))
#print(xtable(rbind(summary(Ind_2_SU))), include.rownames = FALSE)


#-----------------------------------k-mean--------------------------------####
C8<-cbind(Ind_2_SU,CaliyPalmira)
summary(C8$Ind_2_SU)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    0.00   21.91   34.02   34.30   45.38  100.00

CALI

#---------------------Índice de percepción por ciudad---------------------------####
library(dplyr)
## 
## Attaching package: 'dplyr'
## The following object is masked from 'package:car':
## 
##     recode
## The following objects are masked from 'package:data.table':
## 
##     between, first, last
## The following objects are masked from 'package:stats':
## 
##     filter, lag
## The following objects are masked from 'package:base':
## 
##     intersect, setdiff, setequal, union
CaliyPalmira$Municipio<-as.factor(CaliyPalmira$Municipio)
Cali<-filter(CaliyPalmira, CaliyPalmira$Municipio=="Cali")

summary(Cali)
##       x11             x12             x21             x22       
##  Min.   :0.000   Min.   :2.000   Min.   :1.000   Min.   :2.000  
##  1st Qu.:3.000   1st Qu.:6.000   1st Qu.:5.000   1st Qu.:3.000  
##  Median :4.000   Median :7.000   Median :5.000   Median :4.000  
##  Mean   :3.565   Mean   :6.294   Mean   :5.386   Mean   :3.656  
##  3rd Qu.:4.000   3rd Qu.:7.000   3rd Qu.:6.000   3rd Qu.:4.000  
##  Max.   :5.000   Max.   :8.000   Max.   :7.000   Max.   :4.000  
##       x23             x24             x25             x31           x32     
##  Min.   :0.000   Min.   :1.000   Min.   :3.000   No     :  5   No     :386  
##  1st Qu.:7.000   1st Qu.:5.000   1st Qu.:6.000   No sabe:  9   No sabe: 61  
##  Median :8.000   Median :6.000   Median :7.000   Si     :783   Si     :350  
##  Mean   :7.329   Mean   :5.864   Mean   :6.504                              
##  3rd Qu.:8.000   3rd Qu.:7.000   3rd Qu.:7.000                              
##  Max.   :8.000   Max.   :7.000   Max.   :7.000                              
##  x33          x41             x42             x43             x44       
##  0:  4   Min.   :1.000   Min.   :1.000   Min.   :1.000   Min.   :1.000  
##  1:720   1st Qu.:3.000   1st Qu.:3.000   1st Qu.:3.000   1st Qu.:2.000  
##  2: 73   Median :4.000   Median :4.000   Median :4.000   Median :4.000  
##          Mean   :3.839   Mean   :3.704   Mean   :3.991   Mean   :3.512  
##          3rd Qu.:5.000   3rd Qu.:5.000   3rd Qu.:5.000   3rd Qu.:5.000  
##          Max.   :7.000   Max.   :7.000   Max.   :7.000   Max.   :7.000  
##       x51             x52             x61             x62       
##  Min.   :1.000   Min.   :1.000   Min.   :0.000   Min.   :1.000  
##  1st Qu.:4.000   1st Qu.:5.000   1st Qu.:1.000   1st Qu.:2.000  
##  Median :5.000   Median :6.000   Median :2.000   Median :4.000  
##  Mean   :4.731   Mean   :5.528   Mean   :2.221   Mean   :3.478  
##  3rd Qu.:6.000   3rd Qu.:7.000   3rd Qu.:3.000   3rd Qu.:5.000  
##  Max.   :7.000   Max.   :7.000   Max.   :6.000   Max.   :7.000  
##       x71             x72             x73             x74       
##  Min.   :1.000   Min.   :1.000   Min.   :1.000   Min.   :1.000  
##  1st Qu.:3.000   1st Qu.:4.000   1st Qu.:3.000   1st Qu.:5.000  
##  Median :4.000   Median :5.000   Median :4.000   Median :6.000  
##  Mean   :4.289   Mean   :4.575   Mean   :4.088   Mean   :5.428  
##  3rd Qu.:5.000   3rd Qu.:6.000   3rd Qu.:5.000   3rd Qu.:6.000  
##  Max.   :7.000   Max.   :7.000   Max.   :7.000   Max.   :7.000  
##       x75             x76             x77             x81       
##  Min.   :1.000   Min.   :1.000   Min.   :1.000   Min.   :1.000  
##  1st Qu.:1.000   1st Qu.:3.000   1st Qu.:4.000   1st Qu.:4.000  
##  Median :3.000   Median :3.000   Median :5.000   Median :5.000  
##  Mean   :3.118   Mean   :3.287   Mean   :4.438   Mean   :4.881  
##  3rd Qu.:5.000   3rd Qu.:4.000   3rd Qu.:5.000   3rd Qu.:6.000  
##  Max.   :5.000   Max.   :5.000   Max.   :5.000   Max.   :7.000  
##       x82             x83             x84             x91        
##  Min.   :1.000   Min.   :1.000   Min.   :1.000   Min.   : 0.000  
##  1st Qu.:3.000   1st Qu.:3.000   1st Qu.:3.000   1st Qu.: 0.000  
##  Median :4.000   Median :4.000   Median :4.000   Median : 0.000  
##  Mean   :3.964   Mean   :4.092   Mean   :3.757   Mean   : 0.601  
##  3rd Qu.:5.000   3rd Qu.:5.000   3rd Qu.:5.000   3rd Qu.: 1.000  
##  Max.   :7.000   Max.   :7.000   Max.   :7.000   Max.   :13.000  
##       x92             x93             x94             x95       
##  Min.   :1.000   Min.   :1.000   Min.   :1.000   Min.   :1.000  
##  1st Qu.:2.000   1st Qu.:2.000   1st Qu.:2.000   1st Qu.:3.000  
##  Median :3.000   Median :4.000   Median :4.000   Median :4.000  
##  Mean   :3.449   Mean   :3.601   Mean   :3.606   Mean   :4.464  
##  3rd Qu.:5.000   3rd Qu.:5.000   3rd Qu.:5.000   3rd Qu.:6.000  
##  Max.   :7.000   Max.   :7.000   Max.   :7.000   Max.   :7.000  
##       x101            x102            x103           x104      
##  Min.   :1.000   Min.   :1.000   Min.   :1.00   Min.   :1.000  
##  1st Qu.:4.000   1st Qu.:4.000   1st Qu.:4.00   1st Qu.:4.000  
##  Median :5.000   Median :5.000   Median :4.00   Median :5.000  
##  Mean   :4.494   Mean   :4.675   Mean   :4.12   Mean   :4.588  
##  3rd Qu.:5.000   3rd Qu.:5.000   3rd Qu.:5.00   3rd Qu.:5.000  
##  Max.   :5.000   Max.   :5.000   Max.   :5.00   Max.   :5.000  
##       x105             x106              id          Municipio  
##  Min.   : 0.000   Min.   : 0.000   Min.   :  1.0   Cali   :797  
##  1st Qu.: 4.000   1st Qu.: 2.000   1st Qu.:202.0   Palmira:  0  
##  Median : 8.000   Median : 6.000   Median :407.0                
##  Mean   : 7.853   Mean   : 5.762   Mean   :406.9                
##  3rd Qu.:12.000   3rd Qu.:10.000   3rd Qu.:611.0                
##  Max.   :14.000   Max.   :12.000   Max.   :814.0
## AFM CON TODAS LAS VARIABLES

##Análisis factorial múltiple
CaliyPalmira.FMA<-MFA(Cali[,c(19:34)],
                      group=c(#2,
                              #5,
                              #3,
                              #4,
                              #2,
                              #2, #3
                              7,
                              4,
                              5
                              #6
                              ),
                      type=c(#'s',
                             #'s',
                             #'n',
                             #'s', #n
                             #'s',
                             #'s', #n
                             's',
                             's',
                             's'#,
                             #'s'
                             ),
                      name.group=c(#"Voluntariedad",
                                   #"Conocimiento",  
                                   #"Incertidumbre",
                                   #"Confianza gubernamental",
                                   #"Confianza sector salud",
                                   #"Confianza medios",
                                   "Probabilidad de contagio",
                                   "Severidad",
                                   "Susceptibilidad"), #,
                                   #"Cumplimiento"),
                      #num.group.sup=c(3),
                      graph=FALSE)

CaliyPalmira.FMA$eig
##         eigenvalue percentage of variance cumulative percentage of variance
## comp 1  1.88558352              35.330673                          35.33067
## comp 2  0.80127659              15.013730                          50.34440
## comp 3  0.46792772               8.767684                          59.11209
## comp 4  0.33608339               6.297283                          65.40937
## comp 5  0.31549687               5.911548                          71.32092
## comp 6  0.26084766               4.887571                          76.20849
## comp 7  0.23464033               4.396517                          80.60501
## comp 8  0.19947998               3.737709                          84.34272
## comp 9  0.16751433               3.138760                          87.48148
## comp 10 0.14802976               2.773672                          90.25515
## comp 11 0.12433215               2.329644                          92.58479
## comp 12 0.10948924               2.051529                          94.63632
## comp 13 0.08829007               1.654314                          96.29063
## comp 14 0.07611270               1.426144                          97.71678
## comp 15 0.06563418               1.229805                          98.94658
## comp 16 0.05622042               1.053417                         100.00000
CaliyPalmira.FMA$group$contrib
##                             Dim.1     Dim.2    Dim.3     Dim.4     Dim.5
## Probabilidad de contagio 19.82260 79.665204 13.19394 91.207231 85.477448
## Severidad                39.72483 11.178689 50.39997  5.018541  7.488267
## Susceptibilidad          40.45257  9.156107 36.40609  3.774228  7.034285
CaliyPalmira.FMA$group$correlation[,1:3]
##                              Dim.1     Dim.2     Dim.3
## Probabilidad de contagio 0.6159570 0.8031239 0.4393622
## Severidad                0.8709080 0.3042487 0.6027138
## Susceptibilidad          0.8754346 0.2824650 0.4531235
Coordenadas<-round(CaliyPalmira.FMA$quanti.var$coord[,c(1,2,3)],3);Coordenadas
##     Dim.1  Dim.2  Dim.3
## x71 0.519  0.714 -0.077
## x72 0.523  0.638 -0.060
## x73 0.490  0.679 -0.060
## x74 0.395  0.470  0.265
## x75 0.032  0.091 -0.035
## x76 0.349  0.585  0.061
## x77 0.282  0.034  0.316
## x81 0.592 -0.246  0.602
## x82 0.796 -0.288 -0.003
## x83 0.646 -0.272  0.525
## x84 0.793 -0.159  0.031
## x91 0.329 -0.209 -0.505
## x92 0.790 -0.173 -0.356
## x93 0.777 -0.200 -0.244
## x94 0.821 -0.191 -0.284
## x95 0.649 -0.289 -0.143
Contribu<-round(CaliyPalmira.FMA$quanti.var$contrib[,c(1,2,3)],3);Contribu
##      Dim.1  Dim.2  Dim.3
## x71  4.676 20.813  0.418
## x72  4.744 16.620  0.248
## x73  4.174 18.858  0.254
## x74  2.715  9.028  4.929
## x75  0.018  0.336  0.088
## x76  2.113 13.964  0.262
## x77  1.382  0.047  6.994
## x81  6.868  2.781 28.610
## x82 12.399  3.808  0.001
## x83  8.165  3.418 21.713
## x84 12.293  1.171  0.077
## x91  1.804  1.707 17.124
## x92 10.378  1.178  8.505
## x93 10.053  1.559  4.005
## x94 11.210  1.433  5.395
## x95  7.008  3.278  1.377
Tabla<-cbind(Coordenadas,Contribu);Tabla
##     Dim.1  Dim.2  Dim.3  Dim.1  Dim.2  Dim.3
## x71 0.519  0.714 -0.077  4.676 20.813  0.418
## x72 0.523  0.638 -0.060  4.744 16.620  0.248
## x73 0.490  0.679 -0.060  4.174 18.858  0.254
## x74 0.395  0.470  0.265  2.715  9.028  4.929
## x75 0.032  0.091 -0.035  0.018  0.336  0.088
## x76 0.349  0.585  0.061  2.113 13.964  0.262
## x77 0.282  0.034  0.316  1.382  0.047  6.994
## x81 0.592 -0.246  0.602  6.868  2.781 28.610
## x82 0.796 -0.288 -0.003 12.399  3.808  0.001
## x83 0.646 -0.272  0.525  8.165  3.418 21.713
## x84 0.793 -0.159  0.031 12.293  1.171  0.077
## x91 0.329 -0.209 -0.505  1.804  1.707 17.124
## x92 0.790 -0.173 -0.356 10.378  1.178  8.505
## x93 0.777 -0.200 -0.244 10.053  1.559  4.005
## x94 0.821 -0.191 -0.284 11.210  1.433  5.395
## x95 0.649 -0.289 -0.143  7.008  3.278  1.377
plot.MFA(CaliyPalmira.FMA, choix="group",title="Representación de grupos")

#plot.MFA(CaliyPalmira.FMA, choix="ind",lab.par=FALSE)
library(ggrepel)
options(ggrepel.max.overlaps = Inf)
#dim 1-2
plot.MFA(CaliyPalmira.FMA, choix="var",habillage='group',title="Círculo de correlación", repel = TRUE)

IPRG

#--------------------------ÍNDICE DE PERCEPCIÓN GLOBAL-----------------------------------------------#####

res.mfa_severidad=CaliyPalmira.FMA

#Datos
Severidad=Cali[,c(19:34)]

Coord1_severidad <-res.mfa_severidad$global.pca$var$coord[,1];Coord1_severidad
##        x71        x72        x73        x74        x75        x76        x77 
## 0.51897714 0.52273671 0.49032346 0.39540629 0.03201124 0.34883299 0.28217312 
##        x81        x82        x83        x84        x91        x92        x93 
## 0.59244118 0.79605796 0.64597488 0.79262979 0.32918363 0.78957486 0.77708632 
##        x94        x95 
## 0.82059472 0.64882058
lp_severidad<-res.mfa_severidad$eig[1];lp_severidad #VALOR PROPIO
## [1] 1.885584
Vp_severidad<-Coord1_severidad/sqrt(lp_severidad);Vp_severidad #VECTOR PROPIO
##       x71       x72       x73       x74       x75       x76       x77       x81 
## 0.3779422 0.3806800 0.3570753 0.2879524 0.0233120 0.2540356 0.2054910 0.4314419 
##       x82       x83       x84       x91       x92       x93       x94       x95 
## 0.5797247 0.4704275 0.5772282 0.2397261 0.5750034 0.5659087 0.5975935 0.4724999
Pesos_severidad<-(Vp_severidad/sum(Vp_severidad));Pesos_severidad # PESOS RELATIVOS DE LAS VARIABLES
##         x71         x72         x73         x74         x75         x76 
## 0.059090002 0.059518062 0.055827535 0.045020400 0.003644754 0.039717630 
##         x77         x81         x82         x83         x84         x91 
## 0.032127832 0.067454514 0.090638033 0.073549784 0.090247705 0.037480382 
##         x92         x93         x94         x95 
## 0.089899876 0.088477947 0.093431752 0.073873792
sum(Pesos_severidad)
## [1] 1
data.frame(round(Pesos_severidad,3))
##     round.Pesos_severidad..3.
## x71                     0.059
## x72                     0.060
## x73                     0.056
## x74                     0.045
## x75                     0.004
## x76                     0.040
## x77                     0.032
## x81                     0.067
## x82                     0.091
## x83                     0.074
## x84                     0.090
## x91                     0.037
## x92                     0.090
## x93                     0.088
## x94                     0.093
## x95                     0.074
res.mfa_severidad$eig
##         eigenvalue percentage of variance cumulative percentage of variance
## comp 1  1.88558352              35.330673                          35.33067
## comp 2  0.80127659              15.013730                          50.34440
## comp 3  0.46792772               8.767684                          59.11209
## comp 4  0.33608339               6.297283                          65.40937
## comp 5  0.31549687               5.911548                          71.32092
## comp 6  0.26084766               4.887571                          76.20849
## comp 7  0.23464033               4.396517                          80.60501
## comp 8  0.19947998               3.737709                          84.34272
## comp 9  0.16751433               3.138760                          87.48148
## comp 10 0.14802976               2.773672                          90.25515
## comp 11 0.12433215               2.329644                          92.58479
## comp 12 0.10948924               2.051529                          94.63632
## comp 13 0.08829007               1.654314                          96.29063
## comp 14 0.07611270               1.426144                          97.71678
## comp 15 0.06563418               1.229805                          98.94658
## comp 16 0.05622042               1.053417                         100.00000
Ind_severidad<-as.matrix(Severidad)%*%Pesos_severidad
Imin_severidad<-min(Ind_severidad);Imin_severidad
## [1] 0.9625196
Imax_severidad<-max(Ind_severidad);Imax_severidad
## [1] 6.661618
Ind_2_severidad<-round(((Ind_severidad-Imin_severidad)/(Imax_severidad-Imin_severidad))*100,2) #con este índice se hace el cluster
min(Ind_2_severidad)
## [1] 0
max(Ind_2_severidad)
## [1] 100
C8<-cbind(Ind_2_severidad,Cali)

summary(C8$Ind_2_severidad);sd(C8$Ind_2_severidad)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    0.00   39.76   50.89   52.05   63.37  100.00
## [1] 17.58605

ECM

n=round(797*0.80,0);n
## [1] 638
#Nfinal<-c()
NfinalMedia<-c() ##En este vector se estan almacenando las proporciones, osea, cada repeticion bootstrap
for (i in 1:1000) {
  N1=Cali[,c(19:34)]
  Severidad=N1[sample(nrow(N1),size = n,replace = TRUE),]
  res.mfa_severidad=CaliyPalmira.FMA
  #Datos
  Coord1_severidad <-res.mfa_severidad$global.pca$var$coord[,c(1)];Coord1_severidad
  lp_severidad<-res.mfa_severidad$eig[c(1)];lp_severidad #VALOR PROPIO
  Vp_severidad<-Coord1_severidad/sqrt(lp_severidad);Vp_severidad #VECTOR PROPIO
  Pesos_severidad<-(Vp_severidad/sum(Vp_severidad));Pesos_severidad # PESOS RELATIVOS DE LAS VARIABLES
  data.frame(round(Pesos_severidad,3))
  Ind_severidad<-as.matrix(Severidad)%*%Pesos_severidad
  Imin_severidad<-min(Ind_severidad);Imin_severidad
  Imax_severidad<-max(Ind_severidad);Imax_severidad
  Ind_2_severidad<-round(((Ind_severidad-Imin_severidad)/(Imax_severidad-Imin_severidad))*100,2) #con este índice se hace el cluster
  NfinalMedia[i]=median(Ind_2_severidad)

  }; NfinalMedia
##    [1] 49.380 51.065 52.640 49.575 51.640 49.760 52.525 50.555 51.390 50.490
##   [11] 52.300 46.940 49.810 50.250 47.950 49.140 48.385 50.150 50.335 51.710
##   [21] 48.210 49.910 50.005 50.460 47.960 47.865 47.220 48.545 45.850 51.405
##   [31] 50.530 49.645 50.770 49.575 49.210 52.295 47.700 47.315 49.445 52.560
##   [41] 50.390 50.190 47.310 49.710 51.280 52.165 49.895 51.010 51.225 51.735
##   [51] 51.640 47.740 53.590 50.855 50.330 50.460 52.010 52.110 49.710 48.100
##   [61] 48.530 49.520 50.785 49.720 51.840 51.340 49.085 50.270 51.065 47.770
##   [71] 50.900 51.350 49.695 48.385 48.930 45.745 49.980 52.100 49.100 48.530
##   [81] 49.460 48.270 51.250 50.030 47.330 46.785 48.820 48.345 48.915 48.840
##   [91] 49.435 51.310 48.230 50.380 48.090 49.265 51.540 51.200 50.035 51.200
##  [101] 50.775 47.445 52.770 52.510 51.710 48.410 47.370 47.745 52.040 48.360
##  [111] 52.165 51.000 51.510 52.100 51.350 52.470 51.155 49.845 51.020 51.600
##  [121] 52.690 51.600 49.335 49.240 47.310 51.495 52.100 49.150 47.060 50.040
##  [131] 47.210 47.960 49.645 46.890 49.400 48.715 51.440 49.680 50.985 50.095
##  [141] 51.710 52.340 44.695 47.425 48.985 49.400 49.280 49.900 50.800 48.820
##  [151] 51.215 50.775 48.030 51.690 49.960 50.220 49.050 48.905 51.860 49.770
##  [161] 51.630 50.290 50.360 49.950 47.840 51.820 51.955 50.385 48.190 44.835
##  [171] 51.475 52.360 51.780 49.730 51.370 49.630 48.260 50.540 49.870 49.845
##  [181] 47.720 49.855 51.400 51.675 48.765 49.820 48.900 50.980 50.830 47.380
##  [191] 49.580 50.095 50.960 48.500 47.510 49.200 50.990 50.735 48.565 48.565
##  [201] 51.600 49.530 48.895 48.530 51.420 48.545 49.435 49.625 52.110 50.960
##  [211] 51.610 49.270 51.800 51.510 51.240 51.675 49.825 50.030 50.770 49.365
##  [221] 48.490 45.090 51.405 51.930 49.710 51.670 51.020 49.180 50.090 46.210
##  [231] 48.860 51.220 51.665 50.120 52.850 49.920 49.710 53.640 51.110 49.105
##  [241] 51.405 52.580 47.215 49.490 49.860 50.540 49.820 51.350 50.545 49.060
##  [251] 50.110 50.485 50.200 51.225 51.155 49.910 50.210 48.930 50.570 48.960
##  [261] 50.525 52.985 48.250 48.750 47.655 50.120 49.350 52.100 51.780 49.445
##  [271] 47.920 53.690 51.110 51.110 50.630 51.280 51.440 47.495 50.880 47.950
##  [281] 50.340 50.030 50.570 50.585 52.455 49.715 50.890 49.755 51.510 50.315
##  [291] 50.120 52.340 47.620 44.435 51.110 49.435 50.955 49.520 52.645 51.290
##  [301] 49.765 46.790 51.510 50.775 53.180 48.230 46.780 50.895 50.460 46.570
##  [311] 50.385 51.480 52.570 51.290 50.770 50.385 49.260 52.360 51.405 50.310
##  [321] 50.135 51.760 48.740 50.225 50.555 52.645 50.195 50.890 51.000 52.470
##  [331] 48.775 48.705 52.510 49.955 50.990 47.295 50.545 49.265 49.265 52.000
##  [341] 51.780 47.435 51.780 47.110 48.660 50.250 49.620 49.470 48.805 49.465
##  [351] 51.290 50.900 49.815 50.555 49.660 52.450 50.840 49.710 52.125 51.220
##  [361] 49.365 48.400 47.520 51.220 51.200 47.610 51.715 48.660 52.930 51.735
##  [371] 50.895 49.680 50.150 50.075 49.260 51.200 49.875 52.510 49.615 51.770
##  [381] 48.660 45.730 49.465 49.050 49.820 50.280 48.880 49.960 49.240 49.310
##  [391] 48.485 49.120 50.180 49.605 49.710 52.580 51.025 49.265 52.005 50.200
##  [401] 52.450 53.580 48.520 52.295 52.455 51.220 50.480 50.830 50.990 50.855
##  [411] 50.845 51.340 50.470 47.940 49.805 51.660 53.170 50.640 49.735 52.750
##  [421] 47.820 48.410 52.100 48.580 50.950 46.900 49.905 52.395 51.105 48.300
##  [431] 48.765 49.940 48.130 46.230 50.055 48.785 51.115 50.540 52.220 44.335
##  [441] 51.630 50.890 49.800 51.520 50.965 48.345 47.960 52.230 48.310 49.780
##  [451] 51.220 48.165 49.530 47.820 48.680 50.445 50.150 50.250 49.730 49.820
##  [461] 49.535 49.845 52.445 52.495 49.110 48.850 51.960 49.720 49.665 49.110
##  [471] 47.780 46.800 51.430 51.585 52.110 50.555 50.990 48.850 51.010 51.045
##  [481] 48.590 50.770 51.710 50.210 51.920 52.185 52.635 52.450 48.580 51.760
##  [491] 44.335 49.265 50.085 50.460 50.555 51.300 49.620 51.950 52.075 51.280
##  [501] 48.510 48.300 50.740 48.320 51.495 52.005 51.920 51.330 51.220 50.085
##  [511] 50.810 50.890 52.000 48.055 50.120 52.610 51.330 49.920 49.320 48.920
##  [521] 48.930 52.395 50.100 50.600 47.415 49.140 50.650 51.855 50.990 49.140
##  [531] 50.745 52.150 50.570 50.885 48.240 50.900 51.220 50.195 51.840 47.345
##  [541] 50.710 52.540 46.875 48.945 47.895 51.495 50.740 50.160 52.395 48.760
##  [551] 46.990 52.640 49.760 49.290 52.670 51.665 52.705 48.055 48.805 51.660
##  [561] 48.900 49.720 52.985 52.360 48.430 48.280 52.120 49.420 49.155 50.610
##  [571] 50.955 48.075 51.330 51.215 49.575 48.580 47.480 47.150 49.985 49.910
##  [581] 50.560 50.725 49.630 47.340 47.320 51.690 47.840 50.555 45.140 49.880
##  [591] 48.985 51.290 48.945 47.995 50.190 52.845 49.760 49.015 47.355 51.155
##  [601] 52.450 52.580 47.370 49.805 50.890 52.150 49.580 51.960 52.450 52.100
##  [611] 52.295 48.830 45.425 51.020 50.095 52.360 52.045 45.865 52.035 50.515
##  [621] 48.630 49.840 50.390 48.805 48.760 49.335 49.820 50.490 50.030 51.670
##  [631] 51.245 50.180 50.220 51.860 48.785 50.235 50.890 50.070 50.500 50.095
##  [641] 51.985 49.685 51.535 51.495 51.860 49.820 48.615 51.890 52.510 49.580
##  [651] 49.350 50.570 50.615 52.210 47.605 49.530 51.065 51.710 49.870 49.260
##  [661] 49.855 49.940 49.940 48.915 49.630 48.765 50.450 50.340 50.895 50.730
##  [671] 48.500 50.405 49.325 47.660 50.230 50.480 51.350 47.610 48.970 53.340
##  [681] 49.485 48.975 51.670 52.705 51.005 51.155 52.100 48.390 51.155 50.255
##  [691] 50.350 51.350 52.890 51.320 50.730 46.535 47.920 48.060 44.595 51.780
##  [701] 50.035 48.130 51.670 51.960 52.100 48.920 50.505 50.530 51.290 51.490
##  [711] 50.240 47.850 47.800 52.230 48.830 48.130 48.490 47.865 47.210 47.440
##  [721] 49.820 48.210 50.965 48.825 48.385 48.095 51.475 48.870 49.395 52.185
##  [731] 50.740 49.600 51.230 51.775 52.150 51.225 52.965 50.500 49.800 50.810
##  [741] 47.710 49.790 52.105 50.080 51.010 49.680 50.030 48.830 47.770 48.140
##  [751] 47.880 52.690 48.135 47.840 47.600 50.890 46.410 52.110 51.600 50.460
##  [761] 51.170 50.945 51.100 50.615 45.630 49.050 49.810 48.385 50.480 48.775
##  [771] 47.480 49.050 46.830 51.955 52.260 48.155 53.300 49.720 47.940 49.920
##  [781] 47.860 45.085 52.575 52.405 48.150 50.555 51.670 48.385 50.585 49.660
##  [791] 51.435 49.265 52.950 49.900 49.990 51.350 49.380 51.350 51.540 49.250
##  [801] 52.850 52.045 50.195 50.585 51.530 50.050 50.445 49.075 50.075 51.710
##  [811] 50.615 48.580 52.340 51.840 50.895 51.670 51.065 52.520 43.400 49.225
##  [821] 52.580 53.415 49.210 51.410 50.600 48.445 52.575 49.670 47.510 49.620
##  [831] 47.195 47.555 48.760 50.320 51.405 50.050 49.675 51.710 47.770 50.950
##  [841] 49.640 48.510 49.645 50.380 50.780 51.745 49.750 52.295 48.595 50.105
##  [851] 50.130 49.390 50.950 50.940 50.440 49.540 49.260 51.475 51.670 51.220
##  [861] 50.890 51.330 47.050 47.400 51.450 51.540 47.690 50.150 49.325 51.555
##  [871] 49.665 50.585 51.405 51.665 47.405 49.540 51.220 51.780 50.660 52.140
##  [881] 49.830 51.435 49.310 50.950 49.745 47.585 51.050 50.290 48.055 50.220
##  [891] 51.085 50.525 51.480 52.995 51.920 48.105 48.520 48.700 47.675 47.705
##  [901] 47.320 52.580 48.835 48.675 52.940 51.615 50.850 48.660 50.950 51.215
##  [911] 52.230 49.865 48.510 52.100 49.730 51.000 50.075 50.715 50.710 48.080
##  [921] 52.570 48.150 48.660 50.905 50.145 44.160 50.660 52.450 52.220 51.220
##  [931] 49.180 51.105 49.990 50.595 49.170 48.995 48.535 47.690 49.355 49.820
##  [941] 51.800 50.900 52.820 50.510 49.820 50.950 50.085 51.245 50.385 50.135
##  [951] 48.075 49.415 49.720 50.855 48.245 51.850 50.855 47.340 50.260 52.575
##  [961] 51.665 48.110 47.595 49.810 45.065 46.945 48.045 51.035 49.730 48.485
##  [971] 52.565 48.260 51.405 48.915 49.165 48.690 49.215 51.620 52.110 48.230
##  [981] 51.260 51.955 51.525 48.135 50.990 48.170 49.165 50.460 50.580 51.200
##  [991] 51.770 49.380 51.950 50.840 49.695 50.310 51.400 49.820 48.625 50.870
x11();hist(NfinalMedia)

I_mediana=round(median(NfinalMedia,3));I_mediana

## [1] 50
#EE=I_referencia-I_mediana;EE
EE<-round((1/1000)*sum((NfinalMedia-I_mediana)^2+((1/1000)*sum(NfinalMedia)-I_mediana)^2),2);EE
## [1] 2.79

Índices por separado

Probabilidad de contagio

#-----------------------------------probabilidad de contagio-----------------------------------
Proba<-CaliyPalmira.FMA$separate.analyses$`Probabilidad de contagio`$ind$coord[,1]

Imin_Proba<-min(Proba);Imin_Proba
## [1] -5.543756
Imax_Proba<-max(Proba);Imax_Proba
## [1] 3.539925
Ind_2_Proba<-round(((Proba-Imin_Proba)/(Imax_Proba-Imin_Proba))*100,2) #con este índice se hace el cluster
min(Ind_2_Proba)
## [1] 0
max(Ind_2_Proba)
## [1] 100
C8<-cbind(Ind_2_Proba,Cali)
summary(C8$Ind_2_Proba);sd(C8$Ind_2_Proba)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    0.00   49.02   60.59   61.03   73.73  100.00
## [1] 19.25214

ECM

Hago 1000 AFM para construir los índices y así sacar las medianas de casa muestra?

Severidad

#-----------------------------------severidad-----------------------------------
Sev<-CaliyPalmira.FMA$separate.analyses$Severidad$ind$coord[,1]

Imin_Sev<-min(Sev);Imin_Sev
## [1] -3.969254
Imax_Sev<-max(Sev);Imax_Sev
## [1] 3.521764
Ind_2_Sev<-round(((Sev-Imin_Sev)/(Imax_Sev-Imin_Sev))*100,2) #con este índice se hace el cluster
min(Ind_2_Sev)
## [1] 0
max(Ind_2_Sev)
## [1] 100
sd(Ind_2_Sev)
## [1] 21.99115
#rbind(summary(Ind_2_Sev))
#print(xtable(rbind(summary(Ind_2_Sev))), include.rownames = FALSE)
C8<-cbind(Ind_2_Sev,Cali)
summary(C8$Ind_2_Sev)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    0.00   37.60   50.26   52.99   66.90  100.00

Susceptibilidad

#-----------------------------------susceptibilidad-----------------------------------
SU<-CaliyPalmira.FMA$separate.analyses$Susceptibilidad$ind$coord[,1]

Imin_SU<-min(SU);Imin_SU
## [1] -3.393132
Imax_SU<-max(SU);Imax_SU
## [1] 6.640584
Ind_2_SU<-round(((SU-Imin_SU)/(Imax_SU-Imin_SU))*100,2) #con este índice se hace el cluster
min(Ind_2_SU)
## [1] 0
max(Ind_2_SU)
## [1] 100
sd(Ind_2_SU)
## [1] 17.79983
#rbind(summary(Ind_2_SU))
#print(xtable(rbind(summary(Ind_2_SU))), include.rownames = FALSE)


#-----------------------------------k-mean--------------------------------####
C8<-cbind(Ind_2_SU,Cali)
summary(C8$Ind_2_SU)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    0.00   21.30   32.61   33.82   45.43  100.00

PALMIRA

library(dplyr)

CaliyPalmira$Municipio<-as.factor(CaliyPalmira$Municipio)
Palmira<-filter(CaliyPalmira, CaliyPalmira$Municipio=="Palmira")

AFM CON TODAS LAS VARIABLES

##Análisis factorial múltiple
CaliyPalmira.FMA<-MFA(Palmira[,c(19:34)],
                      group=c(#2,
                              #5,
                              #3,
                              #4,
                              #2,
                              #2, #3
                              7,
                              4,
                              5
                              #6
                              ),
                      type=c(#'s',
                             #'s',
                             #'n',
                             #'s', #n
                             #'s',
                             #'s', #n
                             's',
                             's',
                             's'#,
                             #'s'
                             ),
                      name.group=c(#"Voluntariedad",
                                   #"Conocimiento",  
                                   #"Incertidumbre",
                                   #"Confianza gubernamental",
                                   #"Confianza sector salud",
                                   #"Confianza medios",
                                   "Probabilidad de contagio",
                                   "Severidad",
                                   "Susceptibilidad"), #,
                                   #"Cumplimiento"),
                      #num.group.sup=c(3),
                      graph=FALSE)

CaliyPalmira.FMA$eig
##         eigenvalue percentage of variance cumulative percentage of variance
## comp 1  2.04287583             40.5263204                          40.52632
## comp 2  0.70280965             13.9422517                          54.46857
## comp 3  0.48852501              9.6912993                          64.15987
## comp 4  0.32139975              6.3758888                          70.53576
## comp 5  0.22235609              4.4110729                          74.94683
## comp 6  0.21048293              4.1755345                          79.12237
## comp 7  0.18525508              3.6750675                          82.79744
## comp 8  0.16106274              3.1951430                          85.99258
## comp 9  0.13244381              2.6274041                          88.61998
## comp 10 0.11596779              2.3005548                          90.92054
## comp 11 0.10876158              2.1575989                          93.07814
## comp 12 0.09656076              1.9155604                          94.99370
## comp 13 0.07852095              1.5576890                          96.55139
## comp 14 0.06938844              1.3765194                          97.92790
## comp 15 0.05687026              1.1281852                          99.05609
## comp 16 0.04758121              0.9439101                         100.00000
CaliyPalmira.FMA$group$contrib
##                             Dim.1     Dim.2    Dim.3    Dim.4    Dim.5
## Probabilidad de contagio 25.03689 75.462789 32.35813 60.09339 20.54200
## Severidad                37.54348 15.833327 31.50396 25.29624 26.00522
## Susceptibilidad          37.41964  8.703884 36.13791 14.61037 53.45278
CaliyPalmira.FMA$group$correlation[,1:3]
##                              Dim.1     Dim.2     Dim.3
## Probabilidad de contagio 0.7225955 0.7538494 0.5811008
## Severidad                0.8805261 0.3520768 0.5469880
## Susceptibilidad          0.8769671 0.2667586 0.4634630
Coordenadas<-round(CaliyPalmira.FMA$quanti.var$coord[,c(1,2,3)],3);Coordenadas
##     Dim.1  Dim.2  Dim.3
## x71 0.545  0.685 -0.043
## x72 0.531  0.650 -0.050
## x73 0.567  0.627 -0.084
## x74 0.519  0.420  0.237
## x75 0.409  0.167  0.495
## x76 0.451  0.559  0.070
## x77 0.457 -0.113  0.472
## x81 0.626 -0.296  0.499
## x82 0.788 -0.295 -0.069
## x83 0.632 -0.347  0.402
## x84 0.825 -0.094 -0.067
## x91 0.359 -0.188 -0.503
## x92 0.793 -0.149 -0.389
## x93 0.808 -0.156 -0.264
## x94 0.811 -0.148 -0.313
## x95 0.656 -0.310 -0.069
Contribu<-round(CaliyPalmira.FMA$quanti.var$contrib[,c(1,2,3)],3);Contribu
##      Dim.1  Dim.2  Dim.3
## x71  4.257 19.529  0.111
## x72  4.027 17.544  0.152
## x73  4.604 16.356  0.423
## x74  3.848  7.338  3.364
## x75  2.398  1.154 14.671
## x76  2.911 13.014  0.289
## x77  2.991  0.528 13.348
## x81  7.034  4.569 18.684
## x82 11.140  4.536  0.353
## x83  7.163  6.265 12.135
## x84 12.206  0.463  0.332
## x91  1.933  1.545 15.850
## x92  9.422  0.966  9.470
## x93  9.784  1.060  4.377
## x94  9.836  0.958  6.140
## x95  6.444  4.175  0.301
Tabla<-cbind(Coordenadas,Contribu);Tabla
##     Dim.1  Dim.2  Dim.3  Dim.1  Dim.2  Dim.3
## x71 0.545  0.685 -0.043  4.257 19.529  0.111
## x72 0.531  0.650 -0.050  4.027 17.544  0.152
## x73 0.567  0.627 -0.084  4.604 16.356  0.423
## x74 0.519  0.420  0.237  3.848  7.338  3.364
## x75 0.409  0.167  0.495  2.398  1.154 14.671
## x76 0.451  0.559  0.070  2.911 13.014  0.289
## x77 0.457 -0.113  0.472  2.991  0.528 13.348
## x81 0.626 -0.296  0.499  7.034  4.569 18.684
## x82 0.788 -0.295 -0.069 11.140  4.536  0.353
## x83 0.632 -0.347  0.402  7.163  6.265 12.135
## x84 0.825 -0.094 -0.067 12.206  0.463  0.332
## x91 0.359 -0.188 -0.503  1.933  1.545 15.850
## x92 0.793 -0.149 -0.389  9.422  0.966  9.470
## x93 0.808 -0.156 -0.264  9.784  1.060  4.377
## x94 0.811 -0.148 -0.313  9.836  0.958  6.140
## x95 0.656 -0.310 -0.069  6.444  4.175  0.301
plot.MFA(CaliyPalmira.FMA, choix="group",title="Representación de grupos")

#plot.MFA(CaliyPalmira.FMA, choix="ind",lab.par=FALSE)
library(ggrepel)
options(ggrepel.max.overlaps = Inf)
#dim 1-2
plot.MFA(CaliyPalmira.FMA, choix="var",habillage='group',title="Círculo de correlación", repel = TRUE)

IPRG

#--------------------------ÍNDICE DE PERCEPCIÓN GLOBAL-----------------------------------------------#####

res.mfa_severidad=CaliyPalmira.FMA

#Datos
Severidad=Palmira[,c(19:34)]

Coord1_severidad <-res.mfa_severidad$global.pca$var$coord[,1];Coord1_severidad
##       x71       x72       x73       x74       x75       x76       x77       x81 
## 0.5454594 0.5305513 0.5672769 0.5186316 0.4093872 0.4510565 0.4572500 0.6262629 
##       x82       x83       x84       x91       x92       x93       x94       x95 
## 0.7881412 0.6319853 0.8249893 0.3593309 0.7932819 0.8083693 0.8105135 0.6560303
lp_severidad<-res.mfa_severidad$eig[1];lp_severidad #VALOR PROPIO
## [1] 2.042876
Vp_severidad<-Coord1_severidad/sqrt(lp_severidad);Vp_severidad #VECTOR PROPIO
##       x71       x72       x73       x74       x75       x76       x77       x81 
## 0.3816290 0.3711987 0.3968936 0.3628591 0.2864265 0.3155803 0.3199136 0.4381630 
##       x82       x83       x84       x91       x92       x93       x94       x95 
## 0.5514207 0.4421667 0.5772013 0.2514048 0.5550173 0.5655732 0.5670734 0.4589897
Pesos_severidad<-(Vp_severidad/sum(Vp_severidad));Pesos_severidad # PESOS RELATIVOS DE LAS VARIABLES
##        x71        x72        x73        x74        x75        x76        x77 
## 0.05578140 0.05425683 0.05801257 0.05303785 0.04186598 0.04612728 0.04676066 
##        x81        x82        x83        x84        x91        x92        x93 
## 0.06404477 0.08059925 0.06462997 0.08436752 0.03674697 0.08112496 0.08266788 
##        x94        x95 
## 0.08288716 0.06708894
sum(Pesos_severidad)
## [1] 1
data.frame(round(Pesos_severidad,3))
##     round.Pesos_severidad..3.
## x71                     0.056
## x72                     0.054
## x73                     0.058
## x74                     0.053
## x75                     0.042
## x76                     0.046
## x77                     0.047
## x81                     0.064
## x82                     0.081
## x83                     0.065
## x84                     0.084
## x91                     0.037
## x92                     0.081
## x93                     0.083
## x94                     0.083
## x95                     0.067
res.mfa_severidad$eig
##         eigenvalue percentage of variance cumulative percentage of variance
## comp 1  2.04287583             40.5263204                          40.52632
## comp 2  0.70280965             13.9422517                          54.46857
## comp 3  0.48852501              9.6912993                          64.15987
## comp 4  0.32139975              6.3758888                          70.53576
## comp 5  0.22235609              4.4110729                          74.94683
## comp 6  0.21048293              4.1755345                          79.12237
## comp 7  0.18525508              3.6750675                          82.79744
## comp 8  0.16106274              3.1951430                          85.99258
## comp 9  0.13244381              2.6274041                          88.61998
## comp 10 0.11596779              2.3005548                          90.92054
## comp 11 0.10876158              2.1575989                          93.07814
## comp 12 0.09656076              1.9155604                          94.99370
## comp 13 0.07852095              1.5576890                          96.55139
## comp 14 0.06938844              1.3765194                          97.92790
## comp 15 0.05687026              1.1281852                          99.05609
## comp 16 0.04758121              0.9439101                         100.00000
Ind_severidad<-as.matrix(Severidad)%*%Pesos_severidad
Imin_severidad<-min(Ind_severidad);Imin_severidad
## [1] 0.963253
Imax_severidad<-max(Ind_severidad);Imax_severidad
## [1] 6.546757
Ind_2_severidad<-round(((Ind_severidad-Imin_severidad)/(Imax_severidad-Imin_severidad))*100,2) #con este índice se hace el cluster
min(Ind_2_severidad)
## [1] 0
max(Ind_2_severidad)
## [1] 100
C8<-cbind(Ind_2_severidad,Palmira)

summary(C8$Ind_2_severidad);sd(C8$Ind_2_severidad)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    0.00   44.15   57.09   57.03   69.84  100.00
## [1] 18.0409

ECM

n=round(646*0.80,0);n
## [1] 517
#Nfinal<-c()
NfinalMedia<-c() ##En este vector se estan almacenando las proporciones, osea, cada repeticion bootstrap
for (i in 1:1000) {
  N1=Palmira[,c(19:34)]
  Severidad=N1[sample(nrow(N1),size = n,replace = TRUE),]
  res.mfa_severidad=CaliyPalmira.FMA
  #Datos
  Coord1_severidad <-res.mfa_severidad$global.pca$var$coord[,c(1)];Coord1_severidad
  lp_severidad<-res.mfa_severidad$eig[c(1)];lp_severidad #VALOR PROPIO
  Vp_severidad<-Coord1_severidad/sqrt(lp_severidad);Vp_severidad #VECTOR PROPIO
  Pesos_severidad<-(Vp_severidad/sum(Vp_severidad));Pesos_severidad # PESOS RELATIVOS DE LAS VARIABLES
  data.frame(round(Pesos_severidad,3))
  Ind_severidad<-as.matrix(Severidad)%*%Pesos_severidad
  Imin_severidad<-min(Ind_severidad);Imin_severidad
  Imax_severidad<-max(Ind_severidad);Imax_severidad
  Ind_2_severidad<-round(((Ind_severidad-Imin_severidad)/(Imax_severidad-Imin_severidad))*100,2) #con este índice se hace el cluster
  NfinalMedia[i]=median(Ind_2_severidad)

  }; NfinalMedia
##    [1] 57.35 57.97 58.24 57.46 57.38 56.32 56.50 58.10 57.52 56.29 56.78 56.56
##   [13] 57.04 57.30 59.09 57.30 57.70 56.52 57.31 58.35 57.38 56.73 56.85 58.70
##   [25] 55.84 55.96 58.10 56.59 55.54 55.35 57.07 56.07 56.55 52.90 57.11 56.45
##   [37] 57.84 57.13 56.48 55.49 52.40 55.39 56.92 56.35 57.27 56.70 58.04 58.04
##   [49] 56.15 55.55 57.43 54.00 56.15 57.72 57.01 58.35 56.98 58.10 57.39 56.82
##   [61] 57.34 56.04 58.82 56.15 58.29 56.66 57.96 55.12 54.87 56.27 55.43 56.29
##   [73] 54.97 55.11 57.45 58.70 55.88 56.55 56.75 56.17 57.34 57.51 57.46 57.10
##   [85] 57.12 58.73 55.58 55.86 57.11 57.34 57.21 55.39 58.24 56.18 57.32 53.52
##   [97] 58.17 58.43 58.24 57.14 56.06 57.49 57.86 55.49 55.99 57.42 56.36 56.51
##  [109] 57.46 53.00 58.08 56.16 55.97 57.21 57.00 54.23 56.78 54.57 56.73 58.50
##  [121] 56.45 57.10 57.99 56.50 57.96 55.09 56.13 55.54 56.37 57.22 56.45 54.87
##  [133] 57.51 58.47 57.23 55.47 57.49 57.39 58.82 55.88 57.49 55.38 49.41 57.39
##  [145] 54.44 57.38 56.36 53.15 56.92 57.46 58.10 56.10 58.97 57.52 55.07 57.60
##  [157] 56.85 57.32 56.05 55.09 56.07 57.08 55.00 56.48 52.53 55.98 55.81 56.92
##  [169] 57.17 53.28 51.69 56.29 52.99 55.81 55.62 56.76 58.10 54.60 57.22 55.01
##  [181] 57.38 56.06 57.45 55.19 56.75 54.67 56.84 54.98 55.11 56.51 58.03 55.43
##  [193] 57.44 56.18 53.86 57.13 56.27 50.08 57.13 57.70 57.97 57.11 52.40 55.49
##  [205] 56.44 56.92 57.39 57.45 55.12 56.35 57.49 57.11 58.73 57.11 57.68 53.32
##  [217] 56.01 55.18 55.41 57.49 58.06 47.35 56.18 57.08 56.15 54.63 52.63 55.14
##  [229] 57.39 57.01 58.28 55.92 58.47 57.25 57.49 54.10 57.87 56.13 53.55 59.35
##  [241] 56.76 57.13 49.65 56.71 57.46 56.98 55.79 55.88 55.79 55.85 57.10 55.85
##  [253] 57.22 58.35 57.59 55.02 51.63 55.99 56.73 57.21 57.65 57.46 57.21 54.87
##  [265] 57.08 56.32 56.64 57.42 58.98 58.70 54.47 55.77 56.52 56.78 54.63 57.74
##  [277] 56.15 53.79 56.15 56.85 52.06 55.98 57.12 55.63 57.04 57.11 56.33 55.53
##  [289] 56.27 58.45 54.60 57.44 56.72 55.52 57.86 54.70 57.60 56.15 56.32 56.93
##  [301] 58.89 56.76 55.53 55.52 54.64 56.85 57.30 55.70 56.29 58.43 57.17 57.65
##  [313] 58.70 57.10 57.46 56.31 56.17 54.44 57.91 56.75 57.91 58.48 54.00 55.20
##  [325] 57.60 56.45 55.70 58.04 57.10 56.56 56.26 58.43 56.92 55.54 56.75 58.43
##  [337] 55.92 58.89 57.21 55.26 55.05 56.48 58.10 54.60 57.59 58.37 57.49 56.76
##  [349] 54.17 56.85 58.35 58.04 56.27 58.50 56.37 57.00 58.89 55.48 58.37 56.07
##  [361] 55.54 58.59 56.12 57.12 57.46 57.49 53.53 56.60 57.87 57.34 57.60 57.21
##  [373] 54.68 57.38 56.29 57.22 55.92 56.76 54.72 57.65 58.08 56.85 57.60 56.52
##  [385] 57.11 55.99 58.10 54.70 57.17 57.22 55.09 55.52 57.22 56.48 54.98 57.86
##  [397] 55.95 54.87 58.74 57.49 55.99 57.86 53.94 52.73 58.74 57.39 57.70 56.76
##  [409] 57.00 55.89 58.22 58.43 56.84 55.24 58.47 57.77 56.55 54.57 57.17 58.45
##  [421] 52.59 56.43 58.49 57.39 56.27 57.98 57.51 54.87 53.24 57.14 56.10 55.72
##  [433] 58.04 55.52 55.55 58.74 56.21 58.04 56.65 58.24 55.48 58.84 57.59 56.33
##  [445] 57.65 54.74 57.50 55.83 56.26 55.44 57.01 57.08 55.97 57.36 57.27 58.36
##  [457] 53.95 57.99 58.29 58.04 58.45 49.84 58.04 55.99 58.08 58.43 55.95 56.21
##  [469] 56.15 57.09 57.13 56.05 57.17 56.07 55.99 56.78 58.96 55.71 59.13 56.45
##  [481] 58.35 57.60 54.22 57.22 55.78 57.22 57.08 57.00 56.52 57.49 57.46 56.82
##  [493] 57.08 54.81 58.24 56.84 56.55 56.93 56.52 53.99 57.65 52.13 54.15 57.08
##  [505] 56.44 55.99 53.63 55.89 55.41 57.72 56.93 52.46 58.24 59.09 57.46 57.96
##  [517] 54.24 57.01 57.66 56.26 58.29 52.67 57.54 57.96 56.55 57.59 57.59 57.10
##  [529] 58.84 55.81 57.14 57.39 56.65 57.21 56.15 55.47 58.08 57.13 57.27 56.64
##  [541] 57.21 53.49 57.51 56.93 56.85 57.79 52.67 54.51 57.14 56.92 56.92 56.73
##  [553] 50.89 58.50 57.65 56.26 57.70 56.13 55.24 57.27 56.05 56.26 52.60 56.92
##  [565] 55.97 58.24 51.74 58.79 57.38 54.25 57.13 57.42 53.38 57.22 57.49 58.59
##  [577] 56.04 57.21 57.21 54.65 57.01 55.54 57.00 54.15 56.43 54.31 56.82 57.34
##  [589] 56.19 58.24 59.07 58.50 57.14 56.55 57.65 55.55 55.38 55.99 57.22 55.55
##  [601] 57.27 57.01 53.63 58.24 57.22 59.57 56.98 56.07 56.64 56.36 55.02 55.85
##  [613] 56.51 57.38 56.85 54.24 56.19 55.11 55.89 57.10 56.40 56.75 55.71 56.66
##  [625] 51.54 58.47 55.68 57.86 56.73 56.75 55.79 57.60 52.40 51.46 56.85 58.47
##  [637] 57.10 55.77 58.87 58.35 56.35 58.10 57.64 52.45 57.51 55.18 57.90 54.70
##  [649] 57.13 57.65 58.74 55.24 57.42 55.47 57.65 58.73 57.34 54.39 58.56 55.18
##  [661] 57.91 56.55 57.27 57.11 58.40 58.08 57.85 57.45 56.76 54.15 56.73 56.40
##  [673] 57.72 55.99 56.43 57.10 57.27 54.83 58.10 56.52 55.14 58.43 56.36 54.99
##  [685] 56.15 57.59 57.10 59.57 58.48 56.92 57.77 54.81 57.55 57.59 58.76 56.15
##  [697] 58.35 57.00 55.70 53.69 56.26 56.17 54.02 58.36 54.22 57.34 54.83 56.10
##  [709] 56.78 56.17 56.36 55.54 56.76 56.48 54.63 56.59 57.49 56.18 56.84 57.45
##  [721] 57.32 53.79 57.31 56.92 55.41 57.42 57.86 57.74 57.07 58.36 56.45 56.72
##  [733] 56.07 58.36 59.07 55.48 55.71 57.27 56.83 57.38 55.92 55.52 55.52 55.55
##  [745] 57.49 55.79 57.52 57.64 57.65 58.35 57.21 56.13 58.36 56.40 56.15 56.76
##  [757] 56.44 55.44 55.04 57.00 56.07 57.65 55.88 57.27 56.45 57.45 56.84 57.82
##  [769] 56.17 51.63 56.07 57.60 52.57 58.76 54.49 57.72 57.22 57.12 54.15 57.32
##  [781] 58.24 56.75 56.52 56.52 57.21 52.60 57.12 57.01 55.00 58.04 53.91 54.37
##  [793] 56.56 56.60 57.22 57.01 57.82 54.16 54.83 56.48 50.45 57.14 58.24 56.92
##  [805] 57.60 57.30 57.13 54.97 53.50 58.68 51.65 55.78 55.86 54.53 57.49 58.35
##  [817] 55.78 56.48 57.17 58.91 55.32 57.11 57.25 53.00 57.49 57.07 56.13 57.60
##  [829] 58.04 57.21 58.24 55.86 56.98 57.86 55.44 53.59 55.32 58.94 57.64 57.01
##  [841] 56.31 57.13 56.78 56.82 58.84 56.38 55.11 56.66 54.31 57.51 57.17 56.82
##  [853] 51.54 57.70 56.37 57.11 56.83 56.52 57.60 57.00 58.73 54.15 58.17 58.70
##  [865] 57.07 56.13 57.39 58.10 57.87 57.91 57.86 55.52 57.12 54.72 57.87 55.89
##  [877] 57.11 55.52 58.35 57.12 57.49 56.40 57.54 56.72 57.00 55.43 53.88 56.52
##  [889] 51.64 48.21 58.92 55.79 55.97 57.65 57.00 56.56 54.60 52.82 57.95 55.95
##  [901] 56.76 58.08 55.95 58.24 57.34 56.84 54.15 58.24 57.32 57.13 52.90 55.70
##  [913] 53.04 56.66 58.35 52.10 56.05 57.49 50.88 57.39 57.21 52.95 55.95 57.21
##  [925] 58.35 53.69 58.73 56.52 57.72 55.62 58.74 53.90 54.72 57.14 57.17 57.39
##  [937] 55.43 57.87 58.48 58.24 56.45 58.04 56.13 54.50 56.13 57.49 57.86 56.64
##  [949] 57.49 57.65 56.17 55.35 55.20 58.24 55.48 56.65 55.92 56.21 56.15 56.05
##  [961] 57.08 59.11 59.91 53.41 57.49 57.44 56.13 52.69 56.04 58.59 59.25 56.29
##  [973] 57.08 58.04 51.51 56.65 56.45 57.77 56.40 57.41 54.24 58.73 55.79 56.82
##  [985] 57.32 57.36 57.32 55.49 56.83 58.24 53.49 56.15 56.76 59.09 56.94 56.83
##  [997] 55.99 56.50 57.17 57.34
x11();hist(NfinalMedia)

I_mediana=round(median(NfinalMedia,3));I_mediana

## [1] 57
#EE=I_referencia-I_mediana;EE
EE<-round((1/1000)*sum((NfinalMedia-I_mediana)^2+((1/1000)*sum(NfinalMedia)-I_mediana)^2),2);EE
## [1] 3.03

Índices por separado

Probabilidad de contagio

#-----------------------------------probabilidad de contagio-----------------------------------
Proba<-CaliyPalmira.FMA$separate.analyses$`Probabilidad de contagio`$ind$coord[,1]

Imin_Proba<-min(Proba);Imin_Proba
## [1] -6.214496
Imax_Proba<-max(Proba);Imax_Proba
## [1] 3.395533
Ind_2_Proba<-round(((Proba-Imin_Proba)/(Imax_Proba-Imin_Proba))*100,2) #con este índice se hace el cluster
min(Ind_2_Proba)
## [1] 0
max(Ind_2_Proba)
## [1] 100
C8<-cbind(Ind_2_Proba,Palmira)
summary(C8$Ind_2_Proba);sd(C8$Ind_2_Proba)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    0.00   51.83   64.84   64.67   77.22  100.00
## [1] 19.26239

Severidad

#-----------------------------------severidad-----------------------------------
Sev<-CaliyPalmira.FMA$separate.analyses$Severidad$ind$coord[,1]

Imin_Sev<-min(Sev);Imin_Sev
## [1] -4.397929
Imax_Sev<-max(Sev);Imax_Sev
## [1] 3.203421
Ind_2_Sev<-round(((Sev-Imin_Sev)/(Imax_Sev-Imin_Sev))*100,2) #con este índice se hace el cluster
min(Ind_2_Sev)
## [1] 0
max(Ind_2_Sev)
## [1] 100
sd(Ind_2_Sev)
## [1] 21.75114
#rbind(summary(Ind_2_Sev))
#print(xtable(rbind(summary(Ind_2_Sev))), include.rownames = FALSE)
C8<-cbind(Ind_2_Sev,Palmira)
summary(C8$Ind_2_Sev)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    0.00   45.23   58.40   57.86   71.08  100.00

Susceptibilidad

#-----------------------------------susceptibilidad-----------------------------------
SU<-CaliyPalmira.FMA$separate.analyses$Susceptibilidad$ind$coord[,1]

Imin_SU<-min(SU);Imin_SU
## [1] -3.712545
Imax_SU<-max(SU);Imax_SU
## [1] 4.942211
Ind_2_SU<-round(((SU-Imin_SU)/(Imax_SU-Imin_SU))*100,2) #con este índice se hace el cluster
min(Ind_2_SU)
## [1] 0
max(Ind_2_SU)
## [1] 100
sd(Ind_2_SU)
## [1] 20.9077
#rbind(summary(Ind_2_SU))
#print(xtable(rbind(summary(Ind_2_SU))), include.rownames = FALSE)


#-----------------------------------k-mean--------------------------------####
C8<-cbind(Ind_2_SU,Palmira)
summary(C8$Ind_2_SU)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    0.00   26.64   41.91   42.90   57.20  100.00