• Interlaced code, data (Raw) and text
• Repos on github
• in R: Rmarkdown (Rmd)

1. A folder
   • Raw data (csv, xls, html, json)
   • Code and text (Rmd, Rpres, shiny)
   • Results (Manuscript, Web Page, App)

• The webpage of a project
• interactive plots and documents.
• Presentations with interactive elements
• Full manuscripts

• Rmarkdown the ultimate guide
• Cheat sheet

link

# Title

## subtitle

*cursive*

**bold**

[link](https://stackoverflow.com/users/3808018/derek-corcoran)

knitr::include_graphics("Chunk.png")

• echo = T o F show code
• message = T o F shows message of packages
• warning = T o F shows or does not show warning
• eval = T o F runs or does not run the code
• cache = T o F saves the result or not
• For more options check this link

Inline

• Code interlinked with text
• To update means, maximum, minimum
• p-values, statistical differences
• They can be vectors, and not tables.

1. Clone a repository (this one).
2. Generate a report with bookdown, using the template in this repo.
3. Add bibliography (.bib file) to manage your references.
4. Add a couple of plots and use crossreferences for it.
5. Generate a pdf report (overleaf example) and rticles example.
6. Generate a .docx report, send it to someone else to edit it and check the control changes using the redoc package.
7. if we have time, we can add a ioslides presentation