R Notebook

PCR positvity rates

trying URL 'https://cran.ma.imperial.ac.uk/bin/macosx/big-sur-arm64/contrib/4.1/tsibble_1.1.1.tgz'
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The downloaded binary packages are in
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tsibble installed
also installing the dependency ‘fabletools’

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trying URL 'https://cran.ma.imperial.ac.uk/bin/macosx/big-sur-arm64/contrib/4.1/feasts_0.2.2.tgz'
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The downloaded binary packages are in
    /var/folders/bk/jrqs03tx5mq9s28mhml5xzhm0000gn/T//RtmpehX7ad/downloaded_packages

feasts installed
trying URL 'https://cran.ma.imperial.ac.uk/bin/macosx/big-sur-arm64/contrib/4.1/fable_0.3.1.tgz'
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The downloaded binary packages are in
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fable installed

Get positivity data

Series: uniqueCasePositivityBySpecimenDateRollingSum 
Model: ETS(M,A,N) 
  Smoothing parameters:
    alpha = 0.9998995 
    beta  = 0.1506035 

  Initial states:
     l[0]     b[0]
 1.703391 2.926506

  sigma^2:  0.024

     AIC     AICc      BIC 
3674.047 3674.139 3696.485 

Age specific cases

Healthcare data by region

`geom_smooth()` using formula 'y ~ s(x, bs = "cs")'
Warning: Removed 14 rows containing non-finite values (stat_smooth).
Warning: Removed 14 row(s) containing missing values (geom_path).

Warning: Removed 1 row(s) containing missing values (geom_path).