remove Replanted prairie and topsoil data

1 Set up

1.1 1) Load packages

1.2 2) Import data

1.3 3) Data Wrangling

1.4 4) Theme James

## Warning: package 'ggthemes' was built under R version 4.1.2

1.5 5) Depth Wrangling

## Warning: package 'ggcorrplot' was built under R version 4.1.2
##  [1] "number"                     "depths"                    
##  [3] "depth"                      "treatment"                 
##  [5] "replication"                "odadp"                     
##  [7] "respiration"                "horizon"                   
##  [9] "clay"                       "nh4"                       
## [11] "no3"                        "t_np"                      
## [13] "t_nm"                       "to_cp"                     
## [15] "to_cg"                      "ca"                        
## [17] "cu"                         "mg"                        
## [19] "mn"                         "na"                        
## [21] "p"                          "p_h"                       
## [23] "carbonate"                  "k"                         
## [25] "zn"                         "fe"                        
## [27] "gwc"                        "odad"                      
## [29] "bd"                         "ac"                        
## [31] "x20wsa2000"                 "x20wsa250"                 
## [33] "x20wsa53"                   "x20wsa20"                  
## [35] "x20mwd"                     "total_fame_nmol_per_g_soil"
## [37] "bacteria"                   "anaerobic_bacteria"        
## [39] "gram_bacteria"              "gram_bacteria_2"           
## [41] "actinomycetes"              "amf"                       
## [43] "fungi"                      "f_b_ratio"                 
## [45] "glucosidase"                "glucosaminidase"           
## [47] "acidphosphotase"            "alkphosphatase"            
## [49] "arylsulfatase"              "phosphodiesterase"         
## [51] "protein"                    "inn"                       
## [53] "hotkcl"                     "pmc"                       
## [55] "pmn"

1.6 Corrplot matrix

## png 
##   2

2 Biological Graphs

2.1 Total Biomass

2.1.1 Depth

## Warning: Ignoring unknown parameters: se

2.2 Bacteria

2.2.1 Depth

## Warning: Ignoring unknown parameters: se

## [1] TRUE

2.3 Anearobic Bacteria

2.3.1 Depth

## Warning: Ignoring unknown parameters: se

## [1] TRUE

2.4 Gram Positive Bacteria

2.4.1 Depth

## Warning: Ignoring unknown parameters: se

2.5 Gram Negative Bacteria

2.5.1 Depth

## Warning: Ignoring unknown parameters: se

2.6 Actinomycetes

2.6.1 Depth

## Warning: Ignoring unknown parameters: se

2.7 Fungi

2.7.1 Depth

## Warning: Ignoring unknown parameters: se

2.8 AMF

2.8.1 Depth

## Warning: Ignoring unknown parameters: se

2.9 F:B ratio

2.9.1 Depth

## Warning: Ignoring unknown parameters: se

2.10 B-Glucosidase

2.10.1 Depth

## Warning: Ignoring unknown parameters: se

2.11 B-Glucosaminidase

2.11.1 Depth

## Warning: Ignoring unknown parameters: se

2.12 Acid Phosphatase

2.12.1 Depth

## Warning: Ignoring unknown parameters: se

2.13 Alkaline Phosphatase

2.13.1 Depth

## Warning: Ignoring unknown parameters: se

2.14 Arylsulfatase

2.14.1 Depth

## Warning: Ignoring unknown parameters: se

2.15 Phosphodiesterase

2.15.1 Depth

## Warning: Ignoring unknown parameters: se

2.16 Protein Content

2.16.1 Depth

## Warning: Ignoring unknown parameters: se

2.17 Permanganate Oxidizable Organic Carbon

2.17.1 Depth

## Warning: Ignoring unknown parameters: se

2.18 Soil Respiration

2.18.1 Depth

## Warning: Ignoring unknown parameters: se

3 Chemical Graphs

3.1 NH4+

3.1.1 Depth

## Warning: Ignoring unknown parameters: se

3.2 NO3-

3.2.1 Depth

## Warning: Ignoring unknown parameters: se

3.3 Total Nitrogen

3.3.1 Depth

## Warning: Ignoring unknown parameters: se

3.4 Total Organic Carbon

3.4.1 Depth

## Warning: Ignoring unknown parameters: se

3.5 Extractable Ca Content (g/kg)

3.5.1 Depth

## Warning: Ignoring unknown parameters: se

3.6 Extractable Cu Content (mg/kg)

3.6.1 Depth

## Warning: Ignoring unknown parameters: se

3.7 Extractable Mg Content (mg/kg)

3.7.1 Depth

## Warning: Ignoring unknown parameters: se

3.8 Extractable Mn Content (mg/kg)

3.8.1 Depth

## Warning: Ignoring unknown parameters: se

3.9 Extractable Na Content (mg/kg)

3.9.1 Depth

## Warning: Ignoring unknown parameters: se

3.10 Extractable P Content (mg/kg)

3.10.1 Depth

## Warning: Ignoring unknown parameters: se

3.11 Extractable K Content (mg/kg)

3.11.1 Depth

## Warning: Ignoring unknown parameters: se

3.12 Extractable Zn Content (mg/kg)

3.12.1 Depth

## Warning: Ignoring unknown parameters: se

3.13 Extractable Fe Content (mg/kg)

3.13.1 Depth

## Warning: Ignoring unknown parameters: se

3.14 pH

3.14.1 Depth

## Warning: Ignoring unknown parameters: se

3.15 Water Moisture

3.15.1 Depth

## Warning: Ignoring unknown parameters: se

4 Physical graphs

4.1 Clay

4.1.1 Depth

## Warning: Ignoring unknown parameters: se

4.2 20 minute MWD

4.2.1 Depth

## Warning: Ignoring unknown parameters: se

5 New Mexico graphs

5.1 Soil Inorganic Nitrogen

5.1.1 Depth

## Warning: Ignoring unknown parameters: se

5.2 Hot KCl

5.2.1 Depth

## Warning: Ignoring unknown parameters: se

5.3 PMC

5.3.1 Depth

## Warning: Ignoring unknown parameters: se

5.4 PMN

5.4.1 Depth

## Warning: Ignoring unknown parameters: se