Done
Only import the WT and KO (not the HET)
The first cell and gene quality control
Feature selection and dimensional reduction
Clustering at different resolutions
First rough annotation
Stricter cell and gene QC
feature selection
batch correction
dimensional reduction
Interactive Shinyapp with only Oligos
Differential gene expression between WT and KO for BAMs and Oligos
Differential abundance of cells between between WT and KO in the different oligo clusters, including differential expression between clusters. DA_WT_KO
To Do/ In progress: