Visualizing COVID-19 Data in Miami-Dade County

Roy Williams, Mary Jo Trepka, Zoran Bursac, and Gabriel J. Odom

9 August 2021, JSM

Outline

  • Overview and Pandemic Timeline
  • Question 1: What are the recent trends?
  • Question 2: Are we better now, or worse?
  • Question 3: Are we reporting COVID-19 deaths correctly?
  • Summary and Closing Thoughts


Slides available at https://rpubs.com/gabrielodom/JSM_2021_COVID_visuals


DISCLAIMER: all data is from the Florida Department of Health unless otherwise stated

Overview and Pandemic Timeline

The COVID-19 Epidemic in South Florida

  • COVID-19 is a highly contagious respiratory infection caused by the novel coronavirus SARS-Cov-2
  • The incubation period is 2-14 days, so observed data lags community transmission 1-2 weeks
  • The South Florida (SFL) metropolitan region is comprised of Miami-Dade, Broward, and Palm Beach counties
  • There are roughly 6.4 million people in these three counties (30% of the state’s total population)
  • As of today, Florida has had 2.7 million COVID-19 cases (1 million in SFL) and 39965 deaths (12434 in SFL) since March 5, 2020

COVID-19 Epidemic Timeline in South Florida

  • First Wave: Early March (second week) to mid-May 2020
  • Second Wave: Mid-June through August 2020
  • Third Wave: Late October 2020 through 2021 “Spring Break” Season and ending in May 2021
  • Fourth Wave: Mid-July 2021 to current (shown later)

Context: The First Wave (Mar-May 2020)

  • March 16, 2020: confirmed “Patient Zero” in Miami-Dade
  • March 28, 2020: Gov. DeSantis issues a “Safer at Home” order (a lockdown) effective April 1st and required all hospitals to report their COVID-19 data to the state daily
  • Early April 2020: representatives for local elected officials reached out to us for help understanding trends in the data they were receiving daily (example report excerpt below)

Decision to Reopen

  • In mid-April 2020, the White House released reopening guidelines based on 14-day trends in testing, positivity rates, and hospital capacity (Note: at this point, the state of the science was that SARS-Cov-2 was primarily spread via surface contact)
  • The 14-day trend of case counts and test positivity rates became negative in early May, and hospitals had sufficient capacity
  • On May 18, 2020, Miami-Dade County lifted the lockdown restrictions

Question 2: Are we better now, or worse?

“Nothing could be older than the daily news, nothing deader than yesterday’s newspaper.” - Edward Abbey

Context: The Second Wave (June-Sept 2020)

  • At the end of the spring school semesters and after the Memorial Day holiday (May 25), cases began to rise

  • The Florida Department of Health (FLDoH) reported testing data for the most recent 14 days only (below)

  • Local elected and administrative officials struggled to interpret this data, lacking context necessary to compare to the First Wave

Figure: Contextualizing the Current Spread

Decision to Require Masks in Public

  • Using our figures, local officials were better able to contextualize the current state of affairs in the county than they had been using the tables/figures reported by the state Department of Health
  • A “Mask in Public” ordinance had been in place since the end of May, but it was not enforced
  • On July 2, 2020, city officials began enforcement of that ordinance
  • Note 1: Because of the viral incubation period, “current” testing data and hospitalization data was already too old to measure the current state of community transmission
  • Note 2: the county did not lock down because “deaths were decreasing” (more on that next)

Question 3: Are we reporting COVID-19 deaths correctly?

https://slate.com/technology/2020/06/covid-death-rate-declining-explained.html

Context: Peak of the 2nd Wave (July 2020)

  • During the rapid rise of COVID-19 cases and hospitalizations, some of the officials we met with noticed that the number of COVID-19 deaths reported by the state was decreasing, while the number of patients reported to be on ventilators in the hospital was increasing
  • Based on the medical experience at the time, we expected 80% of ventilated patients to expire


Was this because COVID-19 was no longer a threat?

NO!

Interpretation

  • The grey columns are the reported COVID-19 deaths for March-June, 2020, as reported on July 1, 2020
  • The other stacked columns show how the counts for the exact same days will increase over time as more deaths are reported and certified
  • Using this figure, we convinced the local officials that daily death counts were completely inappropriate data to use in making health policy decisions
  • The local offices of the health department informed us that that medical examiners offices were hopelessly backlogged (Florida required at that time for all COVID-19 deaths to be certified by a medical examiner; this policy changed in August)

Making Inference

  • We no longer have 2-3 month delays in death reporting; this “lag” is 1-3 weeks now, and we have a better understanding of the implications of this delay
  • However, even in 2021, these same shoddy and misinterpreted data are still being used to erroneously claim that the Delta variant “isn’t that bad”

Summary

What We Learned

  • We were blessed to have local officials who cared about science, and we were lucky to be able to work with an incredible interdisciplinary team of experts
  • Real data is messy
  • Responding to a pandemic is exhausting–our team worked 7 days a week for months on end
  • Even very smart people can make bad decisions when data are displayed poorly
  • “Hindsight is 20/20”
  • We, and all of the people we worked with, made mistakes
  • Consider a modification of Hanlon’s Razor: “don’t attribute to malice what can adequately be explained by inexperience, underfunding, and exhaustion.”

Next steps

  • Our paper is here (it’s open access)
  • The emergency order giving us access to the data expired in June 2021, so we have not had access to state data
  • We have access to similar data from the CDC, but they use a different data dictionary
  • We are in the process of reverse-engineering the state health department data from the CDC data in order to have an “apples to apples” comparison across the entire pandemic

Final Thoughts

Please get vaccinated!


GitHub repository for this presentation: https://github.com/gabrielodom/JSM_2021_COVID_Visuals