Chapter 4 version 10 NRCS graphs depth
James Lin
8/6/2021
1 Set up
1.1 1) Load packages
1.2 2) Import data
1.3 3) Data Wrangling
1.4 4) Theme James
2 Extra
2.1 Correlation Matrix
## [1] "sample_name" "location" "treatment"
## [4] "depth" "replication" "bdepth"
## [7] "nhorizon" "blk" "horizon"
## [10] "thorizon" "rlanduse" "landuse"
## [13] "elevation" "clay" "temp"
## [16] "precip" "prec" "ag"
## [19] "tillage" "nh4" "no3"
## [22] "t_np" "t_nm" "to_cp"
## [25] "to_cg" "ca" "cu"
## [28] "mg" "mn" "na"
## [31] "p" "p_h" "carbonate"
## [34] "k" "zn" "fe"
## [37] "cec" "gwc" "odad"
## [40] "bd" "ac" "x20wsa2000"
## [43] "x20wsa250" "x20wsa53" "x20wsa20"
## [46] "x20mwd" "x5wsa2000" "x5wsa250"
## [49] "x5wsa53" "x5wsa20" "x5mwd"
## [52] "nagg" "respiration" "mb"
## [55] "gramp" "gramn" "actin"
## [58] "amf" "fungi" "fb"
## [61] "glucosidase" "glucosaminidase" "acidphosphotase"
## [64] "alkphosphatase" "arylsulfatase" "phosphodiesterase"
## [67] "protein" "socstock" "tnstock"
## [70] "pgrmp" "pgrmn" "pactin"
## [73] "pamf" "pfungi"## [1] "t_np" "to_cp" "p"
## [4] "p_h" "cec" "bd"
## [7] "ac" "x20mwd" "respiration"
## [10] "mb" "gramp" "gramn"
## [13] "actin" "amf" "fungi"
## [16] "fb" "glucosidase" "glucosaminidase"
## [19] "acidphosphotase" "alkphosphatase" "arylsulfatase"
## [22] "phosphodiesterase" "protein" "pgrmp"
## [25] "pgrmn" "pactin" "pamf"
## [28] "pfungi"
3 Biological Graphs
3.1 B-Glucosidase
##N-acetyl-β-D-glucosaminidase
3.2 Acid Phosphatase
3.3 Alkaline Phosphatase
3.4 Arylsulfatase
3.5 Phosphodiesterase
3.6 Protein Content
3.7 Permanganate Oxidizable Organic Carbon
3.8 Soil Respiration
3.9 Microbial Biomass
3.10 Gram Negative Bacteria
3.11 Gram Positive Bacteria
3.12 Actinomycetes
3.13 Arbuscular Mycorrhizal Fungi
3.14 Saprophytic Fungi
3.15 Fungal to Bacteria ratio
3.16 Composition Gram Negative Bacteria
3.17 Composition Gram Positive Bacteria
3.18 Composition Actinomycetes
3.19 Composition Arbuscular Mycorrhizal Fungi
3.20 Composition Saprophytic Fungi
4 Chemical Graphs
4.1 Total Nitrogen
4.2 Total Nitrogen stock
4.3 TN stocks graph
## location treatment sum
## 1 Hays AG 9.605797
## 8 Hays EA 13.934172
## 15 Hays NP 14.907049
## 21 Manhattan AG 15.655787
## 28 Manhattan EA 14.194287
## 35 Manhattan NP 16.675074
## 42 Tribune AG 10.723844
## 48 Tribune EA 11.075330
## 61 Tribune NP 12.955694
4.4 Soil Organic Carbon
4.5 Soil Organic Carbon stocks
4.6 SOC stocks graph
## location treatment sum
## 1 Hays AG 80.33702
## 8 Hays EA 98.93570
## 15 Hays NP 134.47705
## 21 Manhattan AG 148.80752
## 28 Manhattan EA 149.22606
## 35 Manhattan NP 185.81541
## 42 Tribune AG 103.66324
## 48 Tribune EA 111.08303
## 61 Tribune NP 139.13003
4.7 Extractable Ca Content (g/kg)
4.8 Extractable Cu Content (mg/kg)
4.9 Extractable Mg Content (mg/kg)
4.10 Extractable Mn Content (mg/kg)
4.11 Extractable Na Content (mg/kg)
4.12 Extractable P Content (mg/kg)
4.13 Extractable K Content (mg/kg)
4.14 Extractable Zn Content (mg/kg)
4.15 Extractable Fe Content (mg/kg)
4.16 pH
5 Physical graphs
5.1 Clay
5.2 20 minute MWD
5.3 Bulk Density
6 Ratio Graphs
6.1 Soil Organic Carbon to Nitrogen
6.2 Protein to Total Nitrogen
6.3 Soil Respiration to Soil Organic Carbon
6.4 Glucosidase to Glucosaminidase ratio
6.5 Glucosidase to Acid Phosphotase ratio
6.6 Glucosidase to Alkaline Phosphatase ratio
6.7 Glucosidase to Arylsulfatase ratio
6.8 Glucosidase to Phosphodiesterase ratio
