Parameters

sampleid <- "DB10.077"
main_biom_path <- "/pita/pub/data/16S_DBs/processed/16S_DB1-16_merged/table.qza"
main_biom_map <- "/pita/pub/data/16S_DBs/maps/DB1-16_premap_v1.tsv"
alpha_index <- "diversity_inverse_simpson"
# alpha_index  <-  "dominance_gini"

Universal Dysbiosis Index

PCoA

Alpha Diversity

Comparisons