Overview
Reproducibility

Table Overview

Columns	11
Rows	3,257,040
`NA`s	0
Duplicate Rows	0

Column Types

character	5
integer	3
integer64	2
numeric	1

Reproducibility Information

Scan Build Time	`2021-07-18 21:34:19`
pointblank Version	`0.7.0.9000`
R Version	R version 4.1.0 (2021–05–18) Camp Pontanezen
Operating System	`x86_64-apple-darwin17.0`

rfam_acc
character

Distinct	3,874 (0.12%)
`NA`s	0
`Inf`/`-Inf`	0

Common Values
String Lengths

Value	Count	Frequency
RF00005	1430975	43.9%
RF00163	190681	5.9%
RF00001	140644	4.3%
RF00906	100466	3.1%
RF02271	75164	2.3%
RF00097	60610	1.9%
RF00436	53279	1.6%
RF02543	52832	1.6%
RF02541	49777	1.5%
Other Values (1627168)	1627168	50.0%

String Lengths

Mean	7.0
Minimum	7.0
Maximum	7.0

Histogram

rfamseq_acc
character

Distinct	981,380 (30.13%)
`NA`s	0
`Inf`/`-Inf`	0

Common Values
String Lengths

Value	Count	Frequency
CM002888.2	15347	0.5%
HE601624.1	7870	0.2%
CM000231.2	7174	0.2%
HE601631.1	6161	0.2%
CM000240.1	5354	0.2%
CM000235.2	5198	0.2%
CM003279.1	5110	0.2%
HE601625.1	4927	0.2%
CM000232.2	4769	0.1%
Other Values (3257030)	3257030	100.0%

String Lengths

Mean	12.2
Minimum	8.0
Maximum	21.0

Histogram

seq_start
integer

Distinct	1,399,123 (42.96%)
`NA`s	0
`Inf`/`-Inf`	0

Mean	11,534,854.02
Minimum	1
Maximum	744,743,214

Quantile Statistics

Minimum	1.00
5th Percentile	223.00
Q1	5,830.00
Median	54,013.00
Q3	2,855,097.00
95th Percentile	73,827,936.00
Maximum	744,743,214.00
Range	744,743,213.00
IQR	2,849,267.00

Descriptive Statistics

Mean	11,534,854.02
Variance	963,541,749,796,603.75
Standard Deviation	31,040,968.89
Coefficient of Variation	2.69

Value	Count	Frequency
1	78230	2.4%
2	1156	0.0%
3	773	0.0%
84	687	0.0%
87	666	0.0%
85	653	0.0%
86	631	0.0%
73	614	0.0%
83	595	0.0%
Other Values (3173890)	3173890	97.4%

Maximum Values

Value	Count	Frequency
1	78230	2.40%
2	1156	0.04%
3	773	0.02%
84	687	0.02%
87	666	0.02%
85	653	0.02%
86	631	0.02%
73	614	0.02%
83	595	0.02%
4	579	0.02%

Minimum Values

Value	Count	Frequency
43190146	1	0.00%
1043633	1	0.00%
44418682	1	0.00%
1093170	1	0.00%
45669198	1	0.00%
1144523	1	0.00%
46952862	1	0.00%
1197640	1	0.00%
48245304	1	0.00%
1252394	1	0.00%

seq_end
integer

Distinct	1,403,890 (43.10%)
`NA`s	0
`Inf`/`-Inf`	0

Mean	11,534,859.48
Minimum	1
Maximum	744,743,320

Quantile Statistics

Minimum	1.00
5th Percentile	240.00
Q1	5,843.00
Median	54,021.00
Q3	2,854,775.00
95th Percentile	73,828,011.00
Maximum	744,743,320.00
Range	744,743,319.00
IQR	2,848,932.00

Descriptive Statistics

Mean	11,534,859.48
Variance	963,541,577,326,767.00
Standard Deviation	31,040,966.11
Coefficient of Variation	2.69

Value	Count	Frequency
1	40064	1.2%
53	1283	0.0%
65	1105	0.0%
85	1005	0.0%
84	1002	0.0%
48	980	0.0%
73	971	0.0%
51	964	0.0%
50	958	0.0%
Other Values (3212767)	3212767	98.6%

Maximum Values

Value	Count	Frequency
1	40064	1.23%
53	1283	0.04%
65	1105	0.03%
85	1005	0.03%
84	1002	0.03%
48	980	0.03%
73	971	0.03%
51	964	0.03%
50	958	0.03%
67	933	0.03%

Minimum Values

Value	Count	Frequency
41718260	1	0.00%
1006194	1	0.00%
42950850	1	0.00%
1053574	1	0.00%
1102885	1	0.00%
45403991	1	0.00%
1155312	1	0.00%
46694864	1	0.00%
1208097	1	0.00%
48012450	1	0.00%

bit_score
numeric

Distinct	26,224 (0.81%)
`NA`s	0
`Inf`/`-Inf`	0

Mean	128.01
Minimum	25
Maximum	3,445.4

Quantile Statistics

Minimum	25.00
5th Percentile	30.60
Q1	42.00
Median	61.30
Q3	84.30
95th Percentile	439.70
Maximum	3,445.40
Range	3,420.40
IQR	42.30

Descriptive Statistics

Mean	128.01
Variance	89,829.50
Standard Deviation	299.72
Coefficient of Variation	2.34

Value	Count	Frequency
30.7	15941	0.5%
31	14545	0.4%
31.6	10970	0.3%
29.6	10417	0.3%
29.7	10127	0.3%
30.8	10077	0.3%
72.8	10036	0.3%
29.2	9946	0.3%
29.1	9830	0.3%
Other Values (3251881)	3251881	99.8%

Maximum Values

Value	Count	Frequency
30.7	15941	0.49%
31.0	14545	0.45%
31.6	10970	0.34%
29.6	10417	0.32%
29.7	10127	0.31%
30.8	10077	0.31%
72.8	10036	0.31%
29.2	9946	0.31%
29.1	9830	0.30%
30.9	9600	0.29%

Minimum Values

Value	Count	Frequency
2652.5	1	0.00%
2955.8	1	0.00%
1363.8	1	0.00%
2662.1	1	0.00%
1648.4	1	0.00%
1370.7	1	0.00%
2667.1	1	0.00%
1651.7	1	0.00%
2671.5	1	0.00%
1948.1	1	0.00%

evalue_score
character

Distinct	33,332 (1.02%)
`NA`s	0
`Inf`/`-Inf`	0

Common Values
String Lengths

Value	Count	Frequency
0.0e+00	69705	2.1%
22.8	15822	0.5%
18.8	14271	0.4%
1.5e-09	13833	0.4%
1.1e-09	11904	0.4%
1.3	11799	0.4%
12.8	10742	0.3%
1.4e-08	10738	0.3%
1.1e-07	10401	0.3%
Other Values (3220605)	3220605	98.9%

String Lengths

Mean	6.5
Minimum	1.0
Maximum	8.0

Histogram

cm_start
integer

Distinct	3,289 (0.10%)
`NA`s	0
`Inf`/`-Inf`	0

Mean	50.35
Minimum	1
Maximum	3,332

Quantile Statistics

Minimum	1.00
5th Percentile	1.00
Q1	1.00
Median	1.00
Q3	1.00
95th Percentile	8.00
Maximum	3,332.00
Range	3,331.00
IQR	0.00

Descriptive Statistics

Mean	50.35
Variance	88,524.59
Standard Deviation	297.53
Coefficient of Variation	5.91

Value	Count	Frequency
1	3045492	93.5%
8	37691	1.2%
7	10952	0.3%
4	6319	0.2%
6	5675	0.2%
9	3781	0.1%
5	3481	0.1%
10	3396	0.1%
3	2230	0.1%
Other Values (137430)	137430	4.2%

Maximum Values

Value	Count	Frequency
1	3045492	93.50%
8	37691	1.16%
7	10952	0.34%
4	6319	0.19%
6	5675	0.17%
9	3781	0.12%
5	3481	0.11%
10	3396	0.10%
3	2230	0.07%
24	2055	0.06%

Minimum Values

Value	Count	Frequency
3192	1	0.00%
3307	1	0.00%
2861	1	0.00%
3154	1	0.00%
3173	1	0.00%
3193	1	0.00%
3237	1	0.00%
3255	1	0.00%
3272	1	0.00%
3120	1	0.00%

cm_end
integer

Distinct	3,352 (0.10%)
`NA`s	0
`Inf`/`-Inf`	0

Mean	257.82
Minimum	19
Maximum	3,401

Quantile Statistics

Minimum	19.00
5th Percentile	46.00
Q1	71.00
Median	71.00
Q3	119.00
95th Percentile	1,533.00
Maximum	3,401.00
Range	3,382.00
IQR	48.00

Descriptive Statistics

Mean	257.82
Variance	344,817.58
Standard Deviation	587.21
Coefficient of Variation	2.28

Value	Count	Frequency
71	1366878	42.0%
46	221899	6.8%
119	139802	4.3%
135	105696	3.2%
180	75594	2.3%
107	61937	1.9%
54	55275	1.7%
104	53724	1.6%
63	50647	1.6%
Other Values (3244529)	3244529	99.6%

Maximum Values

Value	Count	Frequency
71	1366878	41.97%
46	221899	6.81%
119	139802	4.29%
135	105696	3.25%
180	75594	2.32%
107	61937	1.90%
54	55275	1.70%
104	53724	1.65%
63	50647	1.56%
301	43038	1.32%

Minimum Values

Value	Count	Frequency
3123	1	0.00%
3190	1	0.00%
3211	1	0.00%
3229	1	0.00%
3303	1	0.00%
3212	1	0.00%
3230	1	0.00%
3271	1	0.00%
3372	1	0.00%
3193	1	0.00%

truncated
character

Distinct	4 (0.00%)
`NA`s	0
`Inf`/`-Inf`	0

Common Values
String Lengths

Value	Count	Frequency
0	3125406	96.0%
5	51624	1.6%
3	48561	1.5%
53	31449	1.0%
Other Values (NA)	NA	NA

String Lengths

Mean	1.0
Minimum	1.0
Maximum	2.0

Histogram

type
character

Distinct	2 (0.00%)
`NA`s	0
`Inf`/`-Inf`	0

Common Values
String Lengths

Value	Count	Frequency
full	3178790	97.6%
seed	78250	2.4%
Other Values (NA)	NA	NA

String Lengths

Mean	4.0
Minimum	4.0
Maximum	4.0

Histogram

is_significant
integer

Distinct	2 (0.00%)
`NA`s	0
`Inf`/`-Inf`	0

Mean	0.93
Minimum	0
Maximum	1

Quantile Statistics

Minimum	0.00
5th Percentile	0.00
Q1	1.00
Median	1.00
Q3	1.00
95th Percentile	1.00
Maximum	1.00
Range	1.00
IQR	0.00

Descriptive Statistics

Mean	0.93
Variance	0.06
Standard Deviation	0.25
Coefficient of Variation	0.27

Value	Count	Frequency
1	3032477	93.1%
0	224563	6.9%
Other Values (NA)	NA	NA

Maximum Values

Value	Count	Frequency
1	3032477	93.11%
0	224563	6.89%

Minimum Values

Value	Count	Frequency
0	224563	6.89%
1	3032477	93.11%

	rfam_acc	rfamseq_acc	seq_start	seq_end	bit_score	evalue_score	cm_start	cm_end	truncated	type	is_significant
1	RF00001	DS562887.1	11698675	11698792	82.2	2.4e-12	1	119	0	full	1
2	RF00001	AP014719.1	1816426	1816310	88.0	7.6e-14	1	119	0	full	1
3	RF00001	ALWZ044074759.1	326	208	85.2	4.0e-13	1	119	0	full	1
4	RF00001	CM000801.1	35667655	35667745	45.0	0.00986	1	119	0	full	1
5	RF00001	AOTI011160105.1	2121	2239	83.3	1.3e-12	1	119	0	full	1
6..3257035
3257036	RF03459	APCM01015272.1	3303	3383	79.9	5.5e-12	1	78	0	full	1
3257037	RF03459	AXCO02001682.1	9239	9319	78.8	1.1e-11	1	78	0	full	1
3257038	RF03459	KB664438.1	120135	120215	78.8	1.1e-11	1	78	0	full	1
3257039	RF03459	AXCM01004370.1	12361	12441	77.5	2.4e-11	1	78	0	full	1
3257040	RF03459	KB671568.1	13447	13527	76.8	3.6e-11	1	78	0	full	1

Overview of `full_region`

Variables

Missing Values

Sample

Overview of full_region

Variables

Missing Values

Sample

Overview of `full_region`