HREC Veg Variance Partitioning
Jonathan Spiess
July 6, 2021
PBG Management and Patch
Everything summarized to the transect instead of including transect
I then summarized the sdcor values by Year, variable, and random effect grouping for graphing purposes.
Setup
VOR VP Calc
knitr::kable(VORvar)| Block | Model | Variable | Year | grp | var1 | var2 | vcov | sdcor |
|---|---|---|---|---|---|---|---|---|
| C | VOR20C | VOR | 2020 | Management:Patch | (Intercept) | NA | 0.1481627 | 0.3849191 |
| C | VOR20C | VOR | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000035 |
| C | VOR20C | VOR | 2020 | Residual | NA | NA | 0.0206359 | 0.1436519 |
| FN | VOR20FN | VOR | 2020 | Management:Patch | (Intercept) | NA | 0.0599680 | 0.2448837 |
| FN | VOR20FN | VOR | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | VOR20FN | VOR | 2020 | Residual | NA | NA | 0.0719818 | 0.2682942 |
| FS | VOR20FS | VOR | 2020 | Management:Patch | (Intercept) | NA | 0.0947099 | 0.3077497 |
| FS | VOR20FS | VOR | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000192 |
| FS | VOR20FS | VOR | 2020 | Residual | NA | NA | 0.0162531 | 0.1274875 |
| C | VOR19C | VOR | 2019 | Management:Patch | (Intercept) | NA | 0.0081859 | 0.0904758 |
| C | VOR19C | VOR | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | VOR19C | VOR | 2019 | Residual | NA | NA | 0.0185316 | 0.1361306 |
| FN | VOR19FN | VOR | 2019 | Management:Patch | (Intercept) | NA | 0.0283447 | 0.1683588 |
| FN | VOR19FN | VOR | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | VOR19FN | VOR | 2019 | Residual | NA | NA | 0.0478532 | 0.2187537 |
| FS | VOR19FS | VOR | 2019 | Management:Patch | (Intercept) | NA | 0.1100174 | 0.3316887 |
| FS | VOR19FS | VOR | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0000218 |
| FS | VOR19FS | VOR | 2019 | Residual | NA | NA | 0.0967367 | 0.3110252 |
| C | VOR18C | VOR | 2018 | Management:Patch | (Intercept) | NA | 0.0213475 | 0.1461079 |
| C | VOR18C | VOR | 2018 | Management | (Intercept) | NA | 0.0005668 | 0.0238074 |
| C | VOR18C | VOR | 2018 | Residual | NA | NA | 0.0282575 | 0.1680998 |
| FN | VOR18FN | VOR | 2018 | Management:Patch | (Intercept) | NA | 0.0108403 | 0.1041167 |
| FN | VOR18FN | VOR | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | VOR18FN | VOR | 2018 | Residual | NA | NA | 0.0275516 | 0.1659866 |
| FS | VOR18FS | VOR | 2018 | Management:Patch | (Intercept) | NA | 0.1141322 | 0.3378346 |
| FS | VOR18FS | VOR | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | VOR18FS | VOR | 2018 | Residual | NA | NA | 0.0448179 | 0.2117023 |
| C | VOR17C | VOR | 2017 | Management:Patch | (Intercept) | NA | 0.0242202 | 0.1556286 |
| C | VOR17C | VOR | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | VOR17C | VOR | 2017 | Residual | NA | NA | 0.0316985 | 0.1780407 |
| FN | VOR17FN | VOR | 2017 | Management:Patch | (Intercept) | NA | 0.0136430 | 0.1168032 |
| FN | VOR17FN | VOR | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | VOR17FN | VOR | 2017 | Residual | NA | NA | 0.0237377 | 0.1540705 |
| FS | VOR17FS | VOR | 2017 | Management:Patch | (Intercept) | NA | 0.0409691 | 0.2024082 |
| FS | VOR17FS | VOR | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000022 |
| FS | VOR17FS | VOR | 2017 | Residual | NA | NA | 0.0312325 | 0.1767273 |
Max Live VP Calc
knitr::kable(MLvar)| Block | Model | Variable | Year | grp | var1 | var2 | vcov | sdcor |
|---|---|---|---|---|---|---|---|---|
| C | ML20C | ML | 2020 | Management:Patch:Transect | (Intercept) | NA | 0.1995043 | 0.4466591 |
| C | ML20C | ML | 2020 | Management:Patch | (Intercept) | NA | 2.3367542 | 1.5286446 |
| C | ML20C | ML | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | ML20C | ML | 2020 | Residual | NA | NA | 1.2624451 | 1.1235858 |
| FN | ML20FN | ML | 2020 | Management:Patch | (Intercept) | NA | 0.6841989 | 0.8271632 |
| FN | ML20FN | ML | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | ML20FN | ML | 2020 | Residual | NA | NA | 0.8821963 | 0.9392531 |
| FS | ML20FS | ML | 2020 | Management:Patch | (Intercept) | NA | 1.8225202 | 1.3500075 |
| FS | ML20FS | ML | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | ML20FS | ML | 2020 | Residual | NA | NA | 0.7505467 | 0.8663410 |
| C | ML19C | ML | 2019 | Management:Patch | (Intercept) | NA | 0.2390481 | 0.4889254 |
| C | ML19C | ML | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | ML19C | ML | 2019 | Residual | NA | NA | 0.6803046 | 0.8248058 |
| FN | ML19FN | ML | 2019 | Management:Patch | (Intercept) | NA | 0.2370616 | 0.4868897 |
| FN | ML19FN | ML | 2019 | Management | (Intercept) | NA | 0.0177959 | 0.1334015 |
| FN | ML19FN | ML | 2019 | Residual | NA | NA | 1.2123915 | 1.1010865 |
| FS | ML19FS | ML | 2019 | Management:Patch | (Intercept) | NA | 3.2388413 | 1.7996781 |
| FS | ML19FS | ML | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | ML19FS | ML | 2019 | Residual | NA | NA | 0.4672384 | 0.6835484 |
| C | ML18C | ML | 2018 | Management:Patch | (Intercept) | NA | 0.4301067 | 0.6558252 |
| C | ML18C | ML | 2018 | Management | (Intercept) | NA | 0.1109648 | 0.3331139 |
| C | ML18C | ML | 2018 | Residual | NA | NA | 0.2139652 | 0.4625637 |
| FN | ML18FN | ML | 2018 | Management:Patch | (Intercept) | NA | 0.2902148 | 0.5387159 |
| FN | ML18FN | ML | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | ML18FN | ML | 2018 | Residual | NA | NA | 0.6884618 | 0.8297360 |
| FS | ML18FS | ML | 2018 | Management:Patch | (Intercept) | NA | 1.2028827 | 1.0967601 |
| FS | ML18FS | ML | 2018 | Management | (Intercept) | NA | 0.0268962 | 0.1640006 |
| FS | ML18FS | ML | 2018 | Residual | NA | NA | 0.4943728 | 0.7031165 |
| C | ML17C | ML | 2017 | Management:Patch | (Intercept) | NA | 0.0180346 | 0.1342928 |
| C | ML17C | ML | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000091 |
| C | ML17C | ML | 2017 | Residual | NA | NA | 0.3795064 | 0.6160409 |
| FN | ML17FN | ML | 2017 | Management:Patch | (Intercept) | NA | 0.0712925 | 0.2670066 |
| FN | ML17FN | ML | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | ML17FN | ML | 2017 | Residual | NA | NA | 0.6654469 | 0.8157493 |
| FS | ML17FS | ML | 2017 | Management:Patch | (Intercept) | NA | 0.1348204 | 0.3671789 |
| FS | ML17FS | ML | 2017 | Management | (Intercept) | NA | 0.1207734 | 0.3475247 |
| FS | ML17FS | ML | 2017 | Residual | NA | NA | 1.0511102 | 1.0252367 |
Max Dead VP Calc
knitr::kable(MDvar)| Block | Model | Variable | Year | grp | var1 | var2 | vcov | sdcor |
|---|---|---|---|---|---|---|---|---|
| C | MD20C | MD | 2020 | Management:Patch | (Intercept) | NA | 0.2700584 | 0.5196715 |
| C | MD20C | MD | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | MD20C | MD | 2020 | Residual | NA | NA | 0.0384487 | 0.1960834 |
| FN | MD20FN | MD | 2020 | Management:Patch:Transect | (Intercept) | NA | 0.0975663 | 0.3123560 |
| FN | MD20FN | MD | 2020 | Management:Patch | (Intercept) | NA | 0.2438033 | 0.4937645 |
| FN | MD20FN | MD | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | MD20FN | MD | 2020 | Residual | NA | NA | 0.1235568 | 0.3515065 |
| FS | MD20FS | MD | 2020 | Management:Patch | (Intercept) | NA | 0.2223255 | 0.4715141 |
| FS | MD20FS | MD | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | MD20FS | MD | 2020 | Residual | NA | NA | 0.0588960 | 0.2426851 |
| C | MD19C | MD | 2019 | Management:Patch | (Intercept) | NA | 0.0125325 | 0.1119489 |
| C | MD19C | MD | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | MD19C | MD | 2019 | Residual | NA | NA | 0.0361748 | 0.1901968 |
| FN | MD19FN | MD | 2019 | Management:Patch | (Intercept) | NA | 0.0435045 | 0.2085773 |
| FN | MD19FN | MD | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | MD19FN | MD | 2019 | Residual | NA | NA | 0.0520197 | 0.2280783 |
| FS | MD19FS | MD | 2019 | Management:Patch | (Intercept) | NA | 0.0489946 | 0.2213473 |
| FS | MD19FS | MD | 2019 | Management | (Intercept) | NA | 0.0007179 | 0.0267944 |
| FS | MD19FS | MD | 2019 | Residual | NA | NA | 0.0419173 | 0.2047372 |
| C | MD18C | MD | 2018 | Management:Patch | (Intercept) | NA | 0.0169735 | 0.1302824 |
| C | MD18C | MD | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000064 |
| C | MD18C | MD | 2018 | Residual | NA | NA | 0.0093846 | 0.0968743 |
| FN | MD18FN | MD | 2018 | Management:Patch | (Intercept) | NA | 0.0286219 | 0.1691801 |
| FN | MD18FN | MD | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000028 |
| FN | MD18FN | MD | 2018 | Residual | NA | NA | 0.0153025 | 0.1237033 |
| FS | MD18FS | MD | 2018 | Management:Patch | (Intercept) | NA | 0.0786325 | 0.2804148 |
| FS | MD18FS | MD | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000012 |
| FS | MD18FS | MD | 2018 | Residual | NA | NA | 0.0090663 | 0.0952173 |
| C | MD17C | MD | 2017 | Management:Patch | (Intercept) | NA | 0.0756879 | 0.2751143 |
| C | MD17C | MD | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000032 |
| C | MD17C | MD | 2017 | Residual | NA | NA | 0.0101952 | 0.1009711 |
| FN | MD17FN | MD | 2017 | Management:Patch | (Intercept) | NA | 0.0634879 | 0.2519681 |
| FN | MD17FN | MD | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000050 |
| FN | MD17FN | MD | 2017 | Residual | NA | NA | 0.0093776 | 0.0968378 |
| FS | MD17FS | MD | 2017 | Management:Patch | (Intercept) | NA | 0.0811059 | 0.2847910 |
| FS | MD17FS | MD | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | MD17FS | MD | 2017 | Residual | NA | NA | 0.0288937 | 0.1699815 |
Litter Depth VP Calc
knitr::kable(LMvar)| Block | Model | Variable | Year | grp | var1 | var2 | vcov | sdcor |
|---|---|---|---|---|---|---|---|---|
| C | LM20C | LM | 2020 | Management:Patch | (Intercept) | NA | 0.2449952 | 0.4949699 |
| C | LM20C | LM | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | LM20C | LM | 2020 | Residual | NA | NA | 0.0355606 | 0.1885753 |
| FN | LM20FN | LM | 2020 | Management:Patch | (Intercept) | NA | 0.2298360 | 0.4794121 |
| FN | LM20FN | LM | 2020 | Management | (Intercept) | NA | 0.0152696 | 0.1235702 |
| FN | LM20FN | LM | 2020 | Residual | NA | NA | 0.0550970 | 0.2347274 |
| FS | LM20FS | LM | 2020 | Management:Patch | (Intercept) | NA | 0.1635568 | 0.4044215 |
| FS | LM20FS | LM | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000091 |
| FS | LM20FS | LM | 2020 | Residual | NA | NA | 0.0207371 | 0.1440039 |
| C | LM19C | LM | 2019 | Management:Patch | (Intercept) | NA | 0.0290041 | 0.1703060 |
| C | LM19C | LM | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | LM19C | LM | 2019 | Residual | NA | NA | 0.0503381 | 0.2243615 |
| FN | LM19FN | LM | 2019 | Management:Patch | (Intercept) | NA | 0.0249583 | 0.1579819 |
| FN | LM19FN | LM | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0000194 |
| FN | LM19FN | LM | 2019 | Residual | NA | NA | 0.0210385 | 0.1450466 |
| FS | LM19FS | LM | 2019 | Management:Patch | (Intercept) | NA | 0.0000000 | 0.0000057 |
| FS | LM19FS | LM | 2019 | Management | (Intercept) | NA | 0.0234543 | 0.1531479 |
| FS | LM19FS | LM | 2019 | Residual | NA | NA | 0.0577042 | 0.2402171 |
| C | LM18C | LM | 2018 | Management:Patch | (Intercept) | NA | 0.0176034 | 0.1326777 |
| C | LM18C | LM | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | LM18C | LM | 2018 | Residual | NA | NA | 0.0116913 | 0.1081264 |
| FN | LM18FN | LM | 2018 | Management:Patch | (Intercept) | NA | 0.0929951 | 0.3049510 |
| FN | LM18FN | LM | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000017 |
| FN | LM18FN | LM | 2018 | Residual | NA | NA | 0.0188149 | 0.1371675 |
| FS | LM18FS | LM | 2018 | Management:Patch | (Intercept) | NA | 0.0501537 | 0.2239502 |
| FS | LM18FS | LM | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | LM18FS | LM | 2018 | Residual | NA | NA | 0.0123054 | 0.1109297 |
| C | LM17C | LM | 2017 | Management:Patch | (Intercept) | NA | 0.0022009 | 0.0469139 |
| C | LM17C | LM | 2017 | Management | (Intercept) | NA | 0.0011800 | 0.0343514 |
| C | LM17C | LM | 2017 | Residual | NA | NA | 0.0162886 | 0.1276267 |
| FN | LM17FN | LM | 2017 | Management:Patch | (Intercept) | NA | 0.0299329 | 0.1730112 |
| FN | LM17FN | LM | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | LM17FN | LM | 2017 | Residual | NA | NA | 0.0265149 | 0.1628340 |
| FS | LM17FS | LM | 2017 | Management:Patch | (Intercept) | NA | 0.0068828 | 0.0829628 |
| FS | LM17FS | LM | 2017 | Management | (Intercept) | NA | 0.0010465 | 0.0323494 |
| FS | LM17FS | LM | 2017 | Residual | NA | NA | 0.0147075 | 0.1212743 |
Bare Ground VP Calc
knitr::kable(BGvar)| Block | Model | Variable | Year | grp | var1 | var2 | vcov | sdcor |
|---|---|---|---|---|---|---|---|---|
| C | BG20C | BG | 2020 | Management:Patch | (Intercept) | NA | 0.6498017 | 0.8061028 |
| C | BG20C | BG | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000271 |
| C | BG20C | BG | 2020 | Residual | NA | NA | 0.7922892 | 0.8901063 |
| FN | BG20FN | BG | 2020 | Management:Patch | (Intercept) | NA | 0.4549221 | 0.6744791 |
| FN | BG20FN | BG | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | BG20FN | BG | 2020 | Residual | NA | NA | 0.5500202 | 0.7416335 |
| FS | BG20FS | BG | 2020 | Management:Patch | (Intercept) | NA | 1.1044676 | 1.0509365 |
| FS | BG20FS | BG | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000636 |
| FS | BG20FS | BG | 2020 | Residual | NA | NA | 0.2979886 | 0.5458834 |
| C | BG19C | BG | 2019 | Management:Patch | (Intercept) | NA | 0.2235449 | 0.4728054 |
| C | BG19C | BG | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | BG19C | BG | 2019 | Residual | NA | NA | 0.4856411 | 0.6968795 |
| FN | BG19FN | BG | 2019 | Management:Patch | (Intercept) | NA | 0.2518438 | 0.5018404 |
| FN | BG19FN | BG | 2019 | Management | (Intercept) | NA | 0.0000009 | 0.0009512 |
| FN | BG19FN | BG | 2019 | Residual | NA | NA | 0.3135550 | 0.5599598 |
| FS | BG19FS | BG | 2019 | Management:Patch | (Intercept) | NA | 0.1501359 | 0.3874737 |
| FS | BG19FS | BG | 2019 | Management | (Intercept) | NA | 0.1273263 | 0.3568281 |
| FS | BG19FS | BG | 2019 | Residual | NA | NA | 0.5774392 | 0.7598942 |
| C | BG18C | BG | 2018 | Management:Patch | (Intercept) | NA | 0.1429281 | 0.3780583 |
| C | BG18C | BG | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000341 |
| C | BG18C | BG | 2018 | Residual | NA | NA | 0.1985592 | 0.4455998 |
| FN | BG18FN | BG | 2018 | Management:Patch | (Intercept) | NA | 0.2610453 | 0.5109259 |
| FN | BG18FN | BG | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | BG18FN | BG | 2018 | Residual | NA | NA | 0.2006610 | 0.4479520 |
| FS | BG18FS | BG | 2018 | Management:Patch | (Intercept) | NA | 0.1109963 | 0.3331611 |
| FS | BG18FS | BG | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | BG18FS | BG | 2018 | Residual | NA | NA | 0.3791242 | 0.6157306 |
| C | BG17C | BG | 2017 | Management:Patch | (Intercept) | NA | 0.0879845 | 0.2966219 |
| C | BG17C | BG | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | BG17C | BG | 2017 | Residual | NA | NA | 0.1771098 | 0.4208442 |
| FN | BG17FN | BG | 2017 | Management:Patch | (Intercept) | NA | 0.1794255 | 0.4235864 |
| FN | BG17FN | BG | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | BG17FN | BG | 2017 | Residual | NA | NA | 0.0995663 | 0.3155413 |
| FS | BG17FS | BG | 2017 | Management:Patch | (Intercept) | NA | 0.1418271 | 0.3765994 |
| FS | BG17FS | BG | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | BG17FS | BG | 2017 | Residual | NA | NA | 0.0950053 | 0.3082293 |
Ground Litter VP Calc
knitr::kable(GCvar)| Block | Model | Variable | Year | grp | var1 | var2 | vcov | sdcor |
|---|---|---|---|---|---|---|---|---|
| C | GC20C | GC | 2020 | Management:Patch | (Intercept) | NA | 84.4115879 | 9.1875779 |
| C | GC20C | GC | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | GC20C | GC | 2020 | Residual | NA | NA | 93.8377592 | 9.6869892 |
| FN | GC20FN | GC | 2020 | Management:Patch | (Intercept) | NA | 61.0230143 | 7.8117229 |
| FN | GC20FN | GC | 2020 | Management | (Intercept) | NA | 0.0000006 | 0.0007659 |
| FN | GC20FN | GC | 2020 | Residual | NA | NA | 135.2870014 | 11.6312941 |
| FS | GC20FS | GC | 2020 | Management:Patch | (Intercept) | NA | 94.8298892 | 9.7380639 |
| FS | GC20FS | GC | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | GC20FS | GC | 2020 | Residual | NA | NA | 48.9362284 | 6.9954434 |
| C | GC19C | GC | 2019 | Management:Patch | (Intercept) | NA | 102.4065333 | 10.1196113 |
| C | GC19C | GC | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | GC19C | GC | 2019 | Residual | NA | NA | 37.2261206 | 6.1013212 |
| FN | GC19FN | GC | 2019 | Management:Patch | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | GC19FN | GC | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | GC19FN | GC | 2019 | Residual | NA | NA | 128.2534952 | 11.3249060 |
| FS | GC19FS | GC | 2019 | Management:Patch | (Intercept) | NA | 85.6490285 | 9.2546760 |
| FS | GC19FS | GC | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0001538 |
| FS | GC19FS | GC | 2019 | Residual | NA | NA | 48.2188207 | 6.9439773 |
| C | GC18C | GC | 2018 | Management:Patch | (Intercept) | NA | 1.9344274 | 1.3908370 |
| C | GC18C | GC | 2018 | Management | (Intercept) | NA | 6.9532279 | 2.6368974 |
| C | GC18C | GC | 2018 | Residual | NA | NA | 27.3800594 | 5.2325959 |
| FN | GC18FN | GC | 2018 | Management:Patch | (Intercept) | NA | 8.3758109 | 2.8940993 |
| FN | GC18FN | GC | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | GC18FN | GC | 2018 | Residual | NA | NA | 39.7808097 | 6.3072030 |
| FS | GC18FS | GC | 2018 | Management:Patch | (Intercept) | NA | 18.3903128 | 4.2883928 |
| FS | GC18FS | GC | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | GC18FS | GC | 2018 | Residual | NA | NA | 27.0159740 | 5.1976893 |
| C | GC17C | GC | 2017 | Management:Patch | (Intercept) | NA | 26.5051386 | 5.1483142 |
| C | GC17C | GC | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000845 |
| C | GC17C | GC | 2017 | Residual | NA | NA | 47.4981910 | 6.8918931 |
| FN | GC17FN | GC | 2017 | Management:Patch | (Intercept) | NA | 10.8598449 | 3.2954279 |
| FN | GC17FN | GC | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0001350 |
| FN | GC17FN | GC | 2017 | Residual | NA | NA | 29.6317429 | 5.4435047 |
| FS | GC17FS | GC | 2017 | Management:Patch | (Intercept) | NA | 33.9652757 | 5.8279736 |
| FS | GC17FS | GC | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | GC17FS | GC | 2017 | Residual | NA | NA | 20.4868257 | 4.5262375 |
Standing Litter VP Calc
knitr::kable(LCvar)| Block | Model | Variable | Year | grp | var1 | var2 | vcov | sdcor |
|---|---|---|---|---|---|---|---|---|
| C | LC20C | LC | 2020 | Management:Patch | (Intercept) | NA | 123.086686 | 11.0944439 |
| C | LC20C | LC | 2020 | Management | (Intercept) | NA | 0.000000 | 0.0000003 |
| C | LC20C | LC | 2020 | Residual | NA | NA | 83.247246 | 9.1239929 |
| FN | LC20FN | LC | 2020 | Management:Patch | (Intercept) | NA | 80.626420 | 8.9792216 |
| FN | LC20FN | LC | 2020 | Management | (Intercept) | NA | 0.000000 | 0.0000000 |
| FN | LC20FN | LC | 2020 | Residual | NA | NA | 51.796896 | 7.1970061 |
| FS | LC20FS | LC | 2020 | Management:Patch | (Intercept) | NA | 122.106779 | 11.0501936 |
| FS | LC20FS | LC | 2020 | Management | (Intercept) | NA | 0.000000 | 0.0000000 |
| FS | LC20FS | LC | 2020 | Residual | NA | NA | 34.080600 | 5.8378592 |
| C | LC19C | LC | 2019 | Management:Patch | (Intercept) | NA | 11.816117 | 3.4374580 |
| C | LC19C | LC | 2019 | Management | (Intercept) | NA | 0.000000 | 0.0000000 |
| C | LC19C | LC | 2019 | Residual | NA | NA | 86.592395 | 9.3055035 |
| FN | LC19FN | LC | 2019 | Management:Patch | (Intercept) | NA | 11.724179 | 3.4240589 |
| FN | LC19FN | LC | 2019 | Management | (Intercept) | NA | 0.000000 | 0.0000000 |
| FN | LC19FN | LC | 2019 | Residual | NA | NA | 96.987776 | 9.8482372 |
| FS | LC19FS | LC | 2019 | Management:Patch | (Intercept) | NA | 26.813543 | 5.1781795 |
| FS | LC19FS | LC | 2019 | Management | (Intercept) | NA | 0.000000 | 0.0000000 |
| FS | LC19FS | LC | 2019 | Residual | NA | NA | 146.141957 | 12.0889188 |
| C | LC18C | LC | 2018 | Management:Patch | (Intercept) | NA | 3.792175 | 1.9473508 |
| C | LC18C | LC | 2018 | Management | (Intercept) | NA | 0.000000 | 0.0001000 |
| C | LC18C | LC | 2018 | Residual | NA | NA | 7.639562 | 2.7639757 |
| FN | LC18FN | LC | 2018 | Management:Patch | (Intercept) | NA | 30.422366 | 5.5156474 |
| FN | LC18FN | LC | 2018 | Management | (Intercept) | NA | 0.000000 | 0.0001407 |
| FN | LC18FN | LC | 2018 | Residual | NA | NA | 6.327295 | 2.5154114 |
| FS | LC18FS | LC | 2018 | Management:Patch | (Intercept) | NA | 24.850053 | 4.9849827 |
| FS | LC18FS | LC | 2018 | Management | (Intercept) | NA | 0.000000 | 0.0000004 |
| FS | LC18FS | LC | 2018 | Residual | NA | NA | 7.160305 | 2.6758747 |
| C | LC17C | LC | 2017 | Management:Patch | (Intercept) | NA | 31.491344 | 5.6117149 |
| C | LC17C | LC | 2017 | Management | (Intercept) | NA | 0.000000 | 0.0000000 |
| C | LC17C | LC | 2017 | Residual | NA | NA | 17.156284 | 4.1420145 |
| FN | LC17FN | LC | 2017 | Management:Patch | (Intercept) | NA | 33.473312 | 5.7856125 |
| FN | LC17FN | LC | 2017 | Management | (Intercept) | NA | 0.000000 | 0.0000000 |
| FN | LC17FN | LC | 2017 | Residual | NA | NA | 12.227271 | 3.4967515 |
| FS | LC17FS | LC | 2017 | Management:Patch | (Intercept) | NA | 38.859229 | 6.2337171 |
| FS | LC17FS | LC | 2017 | Management | (Intercept) | NA | 0.000000 | 0.0000000 |
| FS | LC17FS | LC | 2017 | Residual | NA | NA | 12.724601 | 3.5671559 |
Forb VP Calc
knitr::kable(FBvar)| Block | Model | Variable | Year | grp | var1 | var2 | vcov | sdcor |
|---|---|---|---|---|---|---|---|---|
| C | FB20C | FB | 2020 | Management:Patch | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | FB20C | FB | 2020 | Management | (Intercept) | NA | 0.2049431 | 0.4527064 |
| C | FB20C | FB | 2020 | Residual | NA | NA | 0.2210517 | 0.4701613 |
| FN | FB20FN | FB | 2020 | Management:Patch | (Intercept) | NA | 0.1258889 | 0.3548082 |
| FN | FB20FN | FB | 2020 | Management | (Intercept) | NA | 0.0481590 | 0.2194516 |
| FN | FB20FN | FB | 2020 | Residual | NA | NA | 0.2169068 | 0.4657325 |
| FS | FB20FS | FB | 2020 | Management:Patch | (Intercept) | NA | 0.1667261 | 0.4083211 |
| FS | FB20FS | FB | 2020 | Management | (Intercept) | NA | 0.2785203 | 0.5277502 |
| FS | FB20FS | FB | 2020 | Residual | NA | NA | 0.3440085 | 0.5865223 |
| C | FB19C | FB | 2019 | Management:Patch | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | FB19C | FB | 2019 | Management | (Intercept) | NA | 0.0345680 | 0.1859248 |
| C | FB19C | FB | 2019 | Residual | NA | NA | 0.3370934 | 0.5805975 |
| FN | FB19FN | FB | 2019 | Management:Patch | (Intercept) | NA | 0.1510442 | 0.3886441 |
| FN | FB19FN | FB | 2019 | Management | (Intercept) | NA | 0.0628155 | 0.2506302 |
| FN | FB19FN | FB | 2019 | Residual | NA | NA | 0.1471419 | 0.3835908 |
| FS | FB19FS | FB | 2019 | Management:Patch | (Intercept) | NA | 0.1374496 | 0.3707419 |
| FS | FB19FS | FB | 2019 | Management | (Intercept) | NA | 0.0359296 | 0.1895511 |
| FS | FB19FS | FB | 2019 | Residual | NA | NA | 0.1067561 | 0.3267355 |
| C | FB18C | FB | 2018 | Management:Patch | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | FB18C | FB | 2018 | Management | (Intercept) | NA | 0.1721765 | 0.4149416 |
| C | FB18C | FB | 2018 | Residual | NA | NA | 0.0755734 | 0.2749061 |
| FN | FB18FN | FB | 2018 | Management:Patch | (Intercept) | NA | 0.1775705 | 0.4213911 |
| FN | FB18FN | FB | 2018 | Management | (Intercept) | NA | 0.2179791 | 0.4668824 |
| FN | FB18FN | FB | 2018 | Residual | NA | NA | 0.2308343 | 0.4804522 |
| FS | FB18FS | FB | 2018 | Management:Patch | (Intercept) | NA | 0.2026420 | 0.4501578 |
| FS | FB18FS | FB | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | FB18FS | FB | 2018 | Residual | NA | NA | 0.2263539 | 0.4757666 |
| C | FB17C | FB | 2017 | Management:Patch | (Intercept) | NA | 0.0240994 | 0.1552398 |
| C | FB17C | FB | 2017 | Management | (Intercept) | NA | 0.1559343 | 0.3948852 |
| C | FB17C | FB | 2017 | Residual | NA | NA | 0.1914661 | 0.4375684 |
| FN | FB17FN | FB | 2017 | Management:Patch | (Intercept) | NA | 0.3277632 | 0.5725060 |
| FN | FB17FN | FB | 2017 | Management | (Intercept) | NA | 0.0746095 | 0.2731474 |
| FN | FB17FN | FB | 2017 | Residual | NA | NA | 0.2493165 | 0.4993160 |
| FS | FB17FS | FB | 2017 | Management:Patch | (Intercept) | NA | 0.5304270 | 0.7283042 |
| FS | FB17FS | FB | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | FB17FS | FB | 2017 | Residual | NA | NA | 0.5125316 | 0.7159131 |
Legume VP Calc
knitr::kable(LGvar)| Block | Model | Variable | Year | grp | var1 | var2 | vcov | sdcor |
|---|---|---|---|---|---|---|---|---|
| C | LG20C | LG | 2020 | Management:Patch | (Intercept) | NA | 0.0896640 | 0.2994395 |
| C | LG20C | LG | 2020 | Management | (Intercept) | NA | 0.5473469 | 0.7398290 |
| C | LG20C | LG | 2020 | Residual | NA | NA | 0.1115472 | 0.3339868 |
| FN | LG20FN | LG | 2020 | Management:Patch | (Intercept) | NA | 0.2435651 | 0.4935231 |
| FN | LG20FN | LG | 2020 | Management | (Intercept) | NA | 0.1985049 | 0.4455389 |
| FN | LG20FN | LG | 2020 | Residual | NA | NA | 0.1910943 | 0.4371434 |
| FS | LG20FS | LG | 2020 | Management:Patch | (Intercept) | NA | 0.3490884 | 0.5908370 |
| FS | LG20FS | LG | 2020 | Management | (Intercept) | NA | 0.2700613 | 0.5196742 |
| FS | LG20FS | LG | 2020 | Residual | NA | NA | 0.4325011 | 0.6576482 |
| C | LG19C | LG | 2019 | Management:Patch | (Intercept) | NA | 0.1201504 | 0.3466271 |
| C | LG19C | LG | 2019 | Management | (Intercept) | NA | 0.2963793 | 0.5444073 |
| C | LG19C | LG | 2019 | Residual | NA | NA | 0.4913028 | 0.7009300 |
| FN | LG19FN | LG | 2019 | Management:Patch | (Intercept) | NA | 0.1522882 | 0.3902412 |
| FN | LG19FN | LG | 2019 | Management | (Intercept) | NA | 0.3172925 | 0.5632872 |
| FN | LG19FN | LG | 2019 | Residual | NA | NA | 0.1755500 | 0.4189868 |
| FS | LG19FS | LG | 2019 | Management:Patch | (Intercept) | NA | 0.4517018 | 0.6720876 |
| FS | LG19FS | LG | 2019 | Management | (Intercept) | NA | 0.1887855 | 0.4344945 |
| FS | LG19FS | LG | 2019 | Residual | NA | NA | 0.2880272 | 0.5366817 |
| C | LG18C | LG | 2018 | Management:Patch | (Intercept) | NA | 0.0458588 | 0.2141466 |
| C | LG18C | LG | 2018 | Management | (Intercept) | NA | 0.1081119 | 0.3288037 |
| C | LG18C | LG | 2018 | Residual | NA | NA | 0.0882594 | 0.2970848 |
| FN | LG18FN | LG | 2018 | Management:Patch | (Intercept) | NA | 0.1426832 | 0.3777344 |
| FN | LG18FN | LG | 2018 | Management | (Intercept) | NA | 0.0849588 | 0.2914769 |
| FN | LG18FN | LG | 2018 | Residual | NA | NA | 0.4153167 | 0.6444507 |
| FS | LG18FS | LG | 2018 | Management:Patch | (Intercept) | NA | 0.6895172 | 0.8303717 |
| FS | LG18FS | LG | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | LG18FS | LG | 2018 | Residual | NA | NA | 0.2429381 | 0.4928875 |
| C | LG17C | LG | 2017 | Management:Patch | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | LG17C | LG | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | LG17C | LG | 2017 | Residual | NA | NA | 0.6785709 | 0.8237541 |
| FN | LG17FN | LG | 2017 | Management:Patch | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | LG17FN | LG | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | LG17FN | LG | 2017 | Residual | NA | NA | 0.2957973 | 0.5438725 |
| FS | LG17FS | LG | 2017 | Management:Patch | (Intercept) | NA | 1.0972655 | 1.0475044 |
| FS | LG17FS | LG | 2017 | Management | (Intercept) | NA | 0.1011238 | 0.3179997 |
| FS | LG17FS | LG | 2017 | Residual | NA | NA | 0.0624569 | 0.2499137 |
Grass VP Calc
knitr::kable(GRvar)| Block | Model | Variable | Year | grp | var1 | var2 | vcov | sdcor |
|---|---|---|---|---|---|---|---|---|
| C | GR20C | GR | 2020 | Management:Patch | (Intercept) | NA | 46.6191997 | 6.8278254 |
| C | GR20C | GR | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | GR20C | GR | 2020 | Residual | NA | NA | 94.8057014 | 9.7368219 |
| FN | GR20FN | GR | 2020 | Management:Patch | (Intercept) | NA | 55.4396928 | 7.4457836 |
| FN | GR20FN | GR | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | GR20FN | GR | 2020 | Residual | NA | NA | 128.8993982 | 11.3533871 |
| FS | GR20FS | GR | 2020 | Management:Patch | (Intercept) | NA | 51.5870237 | 7.1824107 |
| FS | GR20FS | GR | 2020 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | GR20FS | GR | 2020 | Residual | NA | NA | 31.8759037 | 5.6458749 |
| C | GR19C | GR | 2019 | Management:Patch | (Intercept) | NA | 27.4416664 | 5.2384794 |
| C | GR19C | GR | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | GR19C | GR | 2019 | Residual | NA | NA | 57.3791375 | 7.5749018 |
| FN | GR19FN | GR | 2019 | Management:Patch | (Intercept) | NA | 24.6520161 | 4.9650797 |
| FN | GR19FN | GR | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0002211 |
| FN | GR19FN | GR | 2019 | Residual | NA | NA | 165.5308567 | 12.8658796 |
| FS | GR19FS | GR | 2019 | Management:Patch | (Intercept) | NA | 29.2551350 | 5.4088016 |
| FS | GR19FS | GR | 2019 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | GR19FS | GR | 2019 | Residual | NA | NA | 129.8414564 | 11.3947995 |
| C | GR18C | GR | 2018 | Management:Patch | (Intercept) | NA | 31.1710260 | 5.5831018 |
| C | GR18C | GR | 2018 | Management | (Intercept) | NA | 7.4495331 | 2.7293833 |
| C | GR18C | GR | 2018 | Residual | NA | NA | 38.3914480 | 6.1960833 |
| FN | GR18FN | GR | 2018 | Management:Patch | (Intercept) | NA | 30.4156366 | 5.5150373 |
| FN | GR18FN | GR | 2018 | Management | (Intercept) | NA | 0.0000006 | 0.0007508 |
| FN | GR18FN | GR | 2018 | Residual | NA | NA | 96.8667721 | 9.8420919 |
| FS | GR18FS | GR | 2018 | Management:Patch | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | GR18FS | GR | 2018 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FS | GR18FS | GR | 2018 | Residual | NA | NA | 43.3508108 | 6.5841333 |
| C | GR17C | GR | 2017 | Management:Patch | (Intercept) | NA | 33.9086429 | 5.8231128 |
| C | GR17C | GR | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| C | GR17C | GR | 2017 | Residual | NA | NA | 93.9771152 | 9.6941795 |
| FN | GR17FN | GR | 2017 | Management:Patch | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | GR17FN | GR | 2017 | Management | (Intercept) | NA | 0.0000000 | 0.0000000 |
| FN | GR17FN | GR | 2017 | Residual | NA | NA | 95.7207316 | 9.7836972 |
| FS | GR17FS | GR | 2017 | Management:Patch | (Intercept) | NA | 278.3758535 | 16.6845993 |
| FS | GR17FS | GR | 2017 | Management | (Intercept) | NA | 0.0000993 | 0.0099626 |
| FS | GR17FS | GR | 2017 | Residual | NA | NA | 102.2629328 | 10.1125137 |
## `summarise()` has grouped output by 'Year', 'Variable'. You can override using the `.groups` argument.2017 vs 2020 PBG Tests
VOR Year Test
## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 0.03568 0.03568 10.56 0.0314 *
## Residuals 4 0.01351 0.00338
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonP,
## Variable == "VOR"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 0.15424 0.04746 3.25 0.0314 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## (Adjusted p values reported -- single-step method)## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 7.017e-11 7.017e-11 1.326 0.314
## Residuals 4 2.117e-10 5.293e-11##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonM,
## Variable == "VOR"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 6.84e-06 5.94e-06 1.151 0.314
## (Adjusted p values reported -- single-step method)Max Live Year Test
## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 1.4380 1.4380 19.63 0.0114 *
## Residuals 4 0.2931 0.0733
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonP,
## Variable == "ML"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 0.9791 0.2210 4.43 0.0114 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## (Adjusted p values reported -- single-step method)## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 0.02013 0.02013 1 0.374
## Residuals 4 0.08051 0.02013##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonM,
## Variable == "ML"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 -0.1158 0.1158 -1 0.374
## (Adjusted p values reported -- single-step method)Max Dead Year Test
## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 0.07551 0.07551 174.5 0.00019 ***
## Residuals 4 0.00173 0.00043
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonP,
## Variable == "MD"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 0.22436 0.01698 13.21 0.00019 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## (Adjusted p values reported -- single-step method)## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 1.098e-11 1.098e-11 3.488 0.135
## Residuals 4 1.259e-11 3.148e-12##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonM,
## Variable == "MD"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 -2.706e-06 1.449e-06 -1.868 0.135
## (Adjusted p values reported -- single-step method)Litter Depth Year Test
## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 0.19293 0.19293 58.8 0.00155 **
## Residuals 4 0.01312 0.00328
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonP,
## Variable == "LM"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 0.35864 0.04677 7.668 0.00155 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## (Adjusted p values reported -- single-step method)## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 0.000539 0.0005392 0.197 0.68
## Residuals 4 0.010922 0.0027306##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonM,
## Variable == "LM"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 0.01896 0.04267 0.444 0.68
## (Adjusted p values reported -- single-step method)Bare Ground Year Test
## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 0.3431 0.3431 16.89 0.0147 *
## Residuals 4 0.0812 0.0203
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonP,
## Variable == "BG"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 0.4782 0.1164 4.11 0.0147 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## (Adjusted p values reported -- single-step method)## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 1.373e-09 1.373e-09 2.692 0.176
## Residuals 4 2.040e-09 5.101e-10##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonM,
## Variable == "BG"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 3.026e-05 1.844e-05 1.641 0.176
## (Adjusted p values reported -- single-step method)Ground Litter Year Test
## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 25.899 25.899 19.17 0.0119 *
## Residuals 4 5.405 1.351
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonP,
## Variable == "GC"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 4.1552 0.9491 4.378 0.0119 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## (Adjusted p values reported -- single-step method)## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 4.980e-08 4.976e-08 0.497 0.52
## Residuals 4 4.004e-07 1.001e-07##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonM,
## Variable == "GC"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 0.0001821 0.0002583 0.705 0.52
## (Adjusted p values reported -- single-step method)Standing Litter Year Test
## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 30.343 30.343 38.81 0.00338 **
## Residuals 4 3.128 0.782
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonP,
## Variable == "LC"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 4.498 0.722 6.229 0.00338 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## (Adjusted p values reported -- single-step method)## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 1.399e-14 1.399e-14 1 0.374
## Residuals 4 5.596e-14 1.399e-14##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonM,
## Variable == "LC"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 9.658e-08 9.658e-08 1 0.374
## (Adjusted p values reported -- single-step method)Forb Year Test
## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 0.08002 0.08002 1.168 0.341
## Residuals 4 0.27409 0.06852##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonP,
## Variable == "FB"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 -0.2310 0.2137 -1.081 0.341
## (Adjusted p values reported -- single-step method)## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 0.04715 0.04715 1.413 0.3
## Residuals 4 0.13348 0.03337##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonM,
## Variable == "FB"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 0.1773 0.1492 1.189 0.3
## (Adjusted p values reported -- single-step method)Legume Year Test
## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 0.0188 0.01885 0.097 0.771
## Residuals 4 0.7755 0.19388##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonP,
## Variable == "LG"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 0.1121 0.3595 0.312 0.771
## (Adjusted p values reported -- single-step method)## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 0.3206 0.3206 11.22 0.0286 *
## Residuals 4 0.1143 0.0286
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonM,
## Variable == "LG"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 0.4623 0.1380 3.35 0.0286 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## (Adjusted p values reported -- single-step method)Grass Year Test
## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 0.18 0.18 0.005 0.946
## Residuals 4 143.61 35.90##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonP,
## Variable == "GR"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 -0.3506 4.8924 -0.072 0.946
## (Adjusted p values reported -- single-step method)## Df Sum Sq Mean Sq F value Pr(>F)
## Year 1 1.654e-05 1.654e-05 1 0.374
## Residuals 4 6.617e-05 1.654e-05##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: aov(formula = sdcor ~ Year, data = subset(VPYearComparisonM,
## Variable == "GR"))
##
## Linear Hypotheses:
## Estimate Std. Error t value Pr(>|t|)
## 2020 - 2017 == 0 -0.003321 0.003321 -1 0.374
## (Adjusted p values reported -- single-step method)PBG VP Graphs
VOR
Max Live
Max Dead
Bare Ground
Ground Litter
Standing Litter
Forb
Legume
Grass
VP Use Comparison
## `summarise()` has grouped output by 'Year', 'Variable', 'Use'. You can override using the `.groups` argument.## `summarise()` has grouped output by 'Variable', 'Use'. You can override using the `.groups` argument.VOR Use Overall
##
## Model selection based on AICc:
##
## K AICc Delta_AICc AICcWt Cum.Wt LL
## VOR_use_ 4 -68.42 0.00 1 1 38.70
## VOR_use_null 3 -54.77 13.65 0 1 30.67## Data: VPUseP
## Models:
## VOR_use_null: sdcor ~ 1 + (1 | Year)
## VOR_use_: sdcor ~ Use + (1 | Year)
## npar AIC BIC logLik deviance Chisq Df Pr(>Chisq)
## VOR_use_null 3 -55.339 -49.853 30.669 -61.339
## VOR_use_ 4 -69.392 -62.078 38.696 -77.392 16.053 1 6.158e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Simultaneous Tests for General Linear Hypotheses
##
## Multiple Comparisons of Means: Tukey Contrasts
##
##
## Fit: lmer(formula = sdcor ~ Use + (1 | Year), data = VPUseP, REML = FALSE)
##
## Linear Hypotheses:
## Estimate Std. Error z value Pr(>|z|)
## Homogeneous - Heterogeneous == 0 -0.13815 0.03152 -4.383 1.17e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## (Adjusted p values reported -- single-step method)Yearly Vor
Overall VOR
