Install packages
#install.packages('sp')
#install.packages('raster')
#install.packages('rpart')
#install.packages('DT')Load packages
Indicate input folder
RasterPlotGMTED_SAP_BINAIR / Higher than 1 km now
GMTED_SAP <- read.table(paste(InDir,"gmted_sap01.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RasterPlotGMTED_SAP <- raster(paste(InDir, "gmted_sap01.asc", sep = ""))
# Set extent
bb <- extent(90, 150, -10, 20)
extent(RasterPlotGMTED_SAP) <- bb
RasterPlotGMTED_SAP <- setExtent(RasterPlotGMTED_SAP,bb,keepres=FALSE)
# To binary values to create map with all the places which are higher than 1km
RasterPlotGMTED_SAP_BINAIR <- RasterPlotGMTED_SAP
RasterPlotGMTED_SAP_BINAIR[RasterPlotGMTED_SAP_BINAIR <= 1000] <- 0
RasterPlotGMTED_SAP_BINAIR[RasterPlotGMTED_SAP_BINAIR >= 1000] <- 1RasterPlotLandNow / Land Now
LandNow <- read.table(paste(InDir,"landnu.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RasterPlotLandNow <- raster(paste(InDir, "landnu.asc", sep = ""))
# Set extent
bb <- extent(90, 150, -10, 20)
extent(RasterPlotLandNow) <- bb
RasterPlotLandNow <- setExtent(RasterPlotLandNow,bb,keepres=TRUE)
#RasterPlotLandNow
#summary(RasterPlotLandNow)
#head(RasterPlotLandNow)
#View(RasterPlotLandNow)
RasterPlotLandNow[RasterPlotLandNow >= 1] <- 1
RasterPlotLandNow[RasterPlotLandNow < 1] <- 0
RasterPlotLandNow
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : landnu
#> values : 0, 1 (min, max)
summary(RasterPlotLandNow)
#> landnu
#> Min. 0
#> 1st Qu. 0
#> Median 0
#> 3rd Qu. 0
#> Max. 1
#> NA's 0RPEucDistTrans / DistTrans (Euclidean distance)
EucDistTransform <- read.table(paste(InDir,"transbuffer.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RPEucDistTrans <- raster(paste(InDir, "transbuffer.asc", sep = ""))
# Set extent
bb <- extent(90, 150, -10, 20)
extent(RPEucDistTrans) <- bb
RPEucDistTrans <- setExtent(RPEucDistTrans,bb,keepres=TRUE)RPEucDistTrench / DistTrench (Euclidean distance)
EucDistTrench <- read.table(paste(InDir,"trenchbuffer.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RPEucDistTrench <- raster(paste(InDir, "trenchbuffer.asc", sep = ""))
# Set extent
bb <- extent(90, 150, -10, 20)
extent(RPEucDistTrench) <- bb
RPEucDistTrench <- setExtent(RPEucDistTrench,bb,keepres=TRUE)
RPEucDistTrench
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : C:/Users/Linde/Desktop/Scriptie/Schrijven begin/Textuele conceptversie/Final Conceptversion MSc Linde Berbers/Supplementary Information/Supplementary Data 2. RStudio Data/Script Data/trenchbuffer.asc
#> names : trenchbuffer
summary(RPEucDistTrench)
#> Warning in .local(object, ...): summary is an estimate based on a sample of 1e+05 cells (55.56% of all cells)
#> trenchbuffer
#> Min. 0.0
#> 1st Qu. 124650.9
#> Median 313090.2
#> 3rd Qu. 622353.6
#> Max. 1468607.0
#> NA's 0.0RPEucDistFLTB / DistFault (Euclidean distance)
EucDistFLTB <- read.table(paste(InDir,"fltbuffer.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RPEucDistFLTB <- raster(paste(InDir, "fltbuffer.asc", sep = ""))
# Set extent
bb <- extent(90, 150, -10, 20)
extent(RPEucDistFLTB) <- bb
RPEucDistFLTB <- setExtent(RPEucDistFLTB,bb,keepres=TRUE)
RPEucDistFLTB
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : C:/Users/Linde/Desktop/Scriptie/Schrijven begin/Textuele conceptversie/Final Conceptversion MSc Linde Berbers/Supplementary Information/Supplementary Data 2. RStudio Data/Script Data/fltbuffer.asc
#> names : fltbuffer
summary(RPEucDistFLTB)
#> Warning in .local(object, ...): summary is an estimate based on a sample of 1e+05 cells (55.56% of all cells)
#> fltbuffer
#> Min. 0.0
#> 1st Qu. 121986.4
#> Median 308517.3
#> 3rd Qu. 593525.2
#> Max. 2687642.0
#> NA's 0.0RPEucDistPlateBoundB / DistPlateBound (Euclidean distance)
EucDistPlateBoundB <- read.table(paste(InDir,"plateboundbuffer.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RPEucDistPlateBoundB <- raster(paste(InDir, "plateboundbuffer.asc", sep = ""))
# Set extent
bb <- extent(90, 150, -10, 20)
extent(RPEucDistPlateBoundB) <- bb
RPEucDistPlateBoundB <- setExtent(RPEucDistPlateBoundB,bb,keepres=TRUE)
RPEucDistPlateBoundB
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : C:/Users/Linde/Desktop/Scriptie/Schrijven begin/Textuele conceptversie/Final Conceptversion MSc Linde Berbers/Supplementary Information/Supplementary Data 2. RStudio Data/Script Data/plateboundbuffer.asc
#> names : plateboundbuffer
summary(RPEucDistPlateBoundB)
#> Warning in .local(object, ...): summary is an estimate based on a sample of 1e+05 cells (55.56% of all cells)
#> plateboundbuffer
#> Min. 0.00
#> 1st Qu. 69234.75
#> Median 194173.85
#> 3rd Qu. 452474.11
#> Max. 1294251.00
#> NA's 0.00RPEucDistVolcB / DistVolc (Euclidean distance)
EucDistVolcB <- read.table(paste(InDir,"volcbuffer.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RPEucDistVolcB <- raster(paste(InDir, "volcbuffer.asc", sep = ""))
# Set extent
bb <- extent(90, 150, -10, 20)
extent(RPEucDistVolcB) <- bb
RPEucDistVolcB <- setExtent(RPEucDistVolcB,bb,keepres=TRUE)
RPEucDistVolcB
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : C:/Users/Linde/Desktop/Scriptie/Schrijven begin/Textuele conceptversie/Final Conceptversion MSc Linde Berbers/Supplementary Information/Supplementary Data 2. RStudio Data/Script Data/volcbuffer.asc
#> names : volcbuffer
summary(RPEucDistVolcB)
#> Warning in .local(object, ...): summary is an estimate based on a sample of 1e+05 cells (55.56% of all cells)
#> volcbuffer
#> Min. 0.0
#> 1st Qu. 181975.9
#> Median 376217.2
#> 3rd Qu. 588725.1
#> Max. 1491158.0
#> NA's 0.0RasterPlotLITHOLOGY / Lithology
Lithology <- read.table(paste(InDir,"lithology_sap01.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RasterPlotLITHOLOGY <- raster(paste(InDir, "lithology_sap01.asc", sep = ""))
# Set extent
extent(RasterPlotLITHOLOGY) <- bb
RasterPlotLITHOLOGY <- setExtent(RasterPlotLITHOLOGY,bb,keepres=TRUE)
RasterPlotLITHOLOGY
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : C:/Users/Linde/Desktop/Scriptie/Schrijven begin/Textuele conceptversie/Final Conceptversion MSc Linde Berbers/Supplementary Information/Supplementary Data 2. RStudio Data/Script Data/lithology_sap01.asc
#> names : lithology_sap01
#> values : -2147483648, 2147483647 (min, max)
RasterPlotLITHOLOGY[RasterPlotLITHOLOGY <= 1] <- 1
RasterPlotLITHOLOGY[RasterPlotLITHOLOGY >= 14] <- 14
RasterPlotLITHOLOGY
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : lithology_sap01
#> values : 1, 14 (min, max)RasterPlotPRECIP / Precip
Precip <- read.table(paste(InDir,"annualprecipitation_sap01_g.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RasterPlotPRECIP <- raster(paste(InDir, "annualprecipitation_sap01_g.asc", sep = ""))
# Set extent
extent(RasterPlotPRECIP ) <- bb
RasterPlotPRECIP <- setExtent(RasterPlotPRECIP ,bb,keepres=FALSE)
RasterPlotPRECIP[RasterPlotPRECIP <= 749] <- 749
RasterPlotPRECIP[RasterPlotPRECIP >= 6302] <- 6302
RasterPlotPRECIP
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : annualprecipitation_sap01_g
#> values : 749, 6302 (min, max)RasterPlotTEMP / Temp
Temp_sap <- read.table(paste(InDir,"annualmeantemp_sap01_g.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RasterPlotTEMP <- raster(paste(InDir, "annualmeantemp_sap01_g.asc", sep = ""))
# Set extent
bb <- extent(90, 150, -10, 20)
extent(RasterPlotTEMP) <- bb
RasterPlotTEMP<- setExtent(RasterPlotTEMP,bb,keepres=TRUE)
RasterPlotTEMP
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : C:/Users/Linde/Desktop/Scriptie/Schrijven begin/Textuele conceptversie/Final Conceptversion MSc Linde Berbers/Supplementary Information/Supplementary Data 2. RStudio Data/Script Data/annualmeantemp_sap01_g.asc
#> names : annualmeantemp_sap01_gRasterPlotGEOAGE_Mean / GeoMean
geologicage <- read.table(paste(InDir,"geoage_sap01.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RasterPlotGEOAGE <- raster(paste(InDir, "geoage_sap01.asc", sep = ""))
# Set extent
extent(RasterPlotGEOAGE) <- bb
RasterPlotGEOAGE <- setExtent(RasterPlotGEOAGE,bb,keepres=TRUE)
#RasterPlotGEOAGE
RasterPlotGEOAGE_Mean <- RasterPlotGEOAGE
#Mean age from geologic era
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 1] <- NA
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 2] <- NA
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 3] <- 226.6
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 4] <- 250.1
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 5] <- 400.0
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 6] <- 173.2
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 7] <- 1.3
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 8] <- 359.1
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 9] <- 450.0
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 10] <- 492.5
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 11] <- 198.5
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 12] <- 328.9
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 13] <- 159.0
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 14] <- 389.1
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 15] <- 438.8
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 16] <- 600
#RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 16] <- 1520.5
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 17] <- 305.5
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 18] <- 306.0
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 19] <- 11.5
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 20] <- NA
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 21] <- 12.8
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 22] <- 133.7
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 23] <- 513.2
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 24] <- 33.0
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 25] <- 105.5
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 26] <- 303.5
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 27] <- 34.3
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 28] <- 600
#RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 28] <- 1492.7
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 29] <- 275.5
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 30] <- 600
#RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 30] <- 2570.5
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 31] <- 72.5
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 32] <- 251.9
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 33] <- 44.5
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 34] <- 159.0
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 35] <- 251.9
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 36] <- 396.5
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 37] <- 600
#RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 37] <- 3250.0
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 38] <- 280.1
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 39] <- 464.6
RasterPlotGEOAGE_Mean[RasterPlotGEOAGE_Mean == 40] <- 431.5
RasterPlotGEOAGE_Mean
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : geoage_sap01
#> values : 1.3, 600 (min, max)RasterPlotPLATE3TYPE = PlateBoundary now
Platebound3type <- read.table(paste(InDir,"plateboundtype3_sap01.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RasterPlotPLATE3TYPE <- raster(paste(InDir, "plateboundtype3_sap01.asc", sep = ""))
# Set extent
extent(RasterPlotPLATE3TYPE) <- bb
RasterPlotPLATE3TYPE <- setExtent(RasterPlotPLATE3TYPE,bb,keepres=TRUE)
RasterPlotPLATE3TYPE
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : C:/Users/Linde/Desktop/Scriptie/Schrijven begin/Textuele conceptversie/Final Conceptversion MSc Linde Berbers/Supplementary Information/Supplementary Data 2. RStudio Data/Script Data/plateboundtype3_sap01.asc
#> names : plateboundtype3_sap01
#> values : -2147483648, 2147483647 (min, max)
RasterPlotPLATE3TYPE[RasterPlotPLATE3TYPE >= 1] <- 1
RasterPlotPLATE3TYPE
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : plateboundtype3_sap01
#> values : 1, 1 (min, max)
# Make buffer
RasterPlotPLATE3TYPE <- buffer(RasterPlotPLATE3TYPE, width = 20000)
RasterPlotPLATE3TYPE
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : layer
#> values : 1, 1 (min, max)
RasterPlotPLATE3TYPE[is.na(RasterPlotPLATE3TYPE)] <- 0
RasterPlotPLATE3TYPE
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : layer
#> values : 0, 1 (min, max)RasterPlotVOLC_Buffer
Volcanoes <- read.table(paste(InDir,"volcanoes_sap01.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RasterPlotVOLC <- raster(paste(InDir, "volcanoes_sap01.asc", sep = ""))
# Set extent
extent(RasterPlotVOLC) <- bb
RasterPlotVOLC <- setExtent(RasterPlotVOLC,bb,keepres=TRUE)
RasterPlotVOLC
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : C:/Users/Linde/Desktop/Scriptie/Schrijven begin/Textuele conceptversie/Final Conceptversion MSc Linde Berbers/Supplementary Information/Supplementary Data 2. RStudio Data/Script Data/volcanoes_sap01.asc
#> names : volcanoes_sap01
#> values : -2147483648, 2147483647 (min, max)
RasterPlotVOLC[RasterPlotVOLC >= 1] <- 1
RasterPlotVOLC
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : volcanoes_sap01
#> values : 1, 1 (min, max)
RasterPlotVOLC_Buffer <- buffer(RasterPlotVOLC, width = 20000)
RasterPlotVOLC_Buffer
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : layer
#> values : 1, 1 (min, max)
RasterPlotVOLC_Buffer[is.na(RasterPlotVOLC_Buffer)] <- 0
RasterPlotVOLC_Buffer
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : layer
#> values : 0, 1 (min, max)RasterPlotTRANS_Buffer
Transform <- read.table(paste(InDir,"transform_sap01.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RasterPlotTRANS <- raster(paste(InDir, "transform_sap01.asc", sep = ""))
# Set extent
extent(RasterPlotTRANS) <- bb
RasterPlotTRANS <- setExtent(RasterPlotTRANS,bb,keepres=TRUE)
RasterPlotTRANS
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : C:/Users/Linde/Desktop/Scriptie/Schrijven begin/Textuele conceptversie/Final Conceptversion MSc Linde Berbers/Supplementary Information/Supplementary Data 2. RStudio Data/Script Data/transform_sap01.asc
#> names : transform_sap01
#> values : -2147483648, 2147483647 (min, max)
RasterPlotTRANS[RasterPlotTRANS >= 1] <- 1
RasterPlotTRANS
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : transform_sap01
#> values : 1, 1 (min, max)
# Make buffer
RasterPlotTRANS_Buffer <- buffer(RasterPlotTRANS, width = 20000)
RasterPlotTRANS_Buffer
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : layer
#> values : 1, 1 (min, max)
RasterPlotTRANS_Buffer[is.na(RasterPlotTRANS_Buffer)] <- 0
RasterPlotTRANS_Buffer
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : layer
#> values : 0, 1 (min, max)RasterPlotTRENCH_Buffer
Trench <- read.table(paste(InDir,"trench_sap01.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RasterPlotTRENCH <- raster(paste(InDir, "trench_sap01.asc", sep = ""))
# Set extent
extent(RasterPlotTRENCH) <- bb
RasterPlotTRENCH <- setExtent(RasterPlotTRENCH,bb,keepres=TRUE)
RasterPlotTRENCH
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : C:/Users/Linde/Desktop/Scriptie/Schrijven begin/Textuele conceptversie/Final Conceptversion MSc Linde Berbers/Supplementary Information/Supplementary Data 2. RStudio Data/Script Data/trench_sap01.asc
#> names : trench_sap01
#> values : -2147483648, 2147483647 (min, max)
RasterPlotTRENCH[RasterPlotTRENCH >= 1] <- 1
RasterPlotTRENCH
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : trench_sap01
#> values : 1, 1 (min, max)
# Make buffer
RasterPlotTRENCH_Buffer <- buffer(RasterPlotTRENCH, width = 20000)
RasterPlotTRENCH_Buffer
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : layer
#> values : 1, 1 (min, max)
RasterPlotTRENCH_Buffer[is.na(RasterPlotTRENCH_Buffer)] <- 0
RasterPlotTRENCH_Buffer
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : layer
#> values : 0, 1 (min, max)RasterPlotFAULTLINETYPE_Buffer
FaultLinesType <- read.table(paste(InDir,"faultlinestype_sap01.asc", sep = ""),
skip = 6,quote="\"", comment.char="")
RasterPlotFAULTLINETYPE <- raster(paste(InDir, "faultlinestype_sap01.asc", sep = ""))
# Set extent
extent(RasterPlotFAULTLINETYPE) <- bb
RasterPlotFAULTLINETYPE <- setExtent(RasterPlotFAULTLINETYPE,bb,keepres=TRUE)
RasterPlotFAULTLINETYPE
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : C:/Users/Linde/Desktop/Scriptie/Schrijven begin/Textuele conceptversie/Final Conceptversion MSc Linde Berbers/Supplementary Information/Supplementary Data 2. RStudio Data/Script Data/faultlinestype_sap01.asc
#> names : faultlinestype_sap01
#> values : -2147483648, 2147483647 (min, max)
RasterPlotFAULTLINETYPE[RasterPlotFAULTLINETYPE >= 1] <- 1
RasterPlotFAULTLINETYPE
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : faultlinestype_sap01
#> values : 1, 1 (min, max)
# Make buffer
RasterPlotFAULTLINETYPE_Buffer <- buffer(RasterPlotFAULTLINETYPE, width = 20000)
RasterPlotFAULTLINETYPE_Buffer
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : layer
#> values : 1, 1 (min, max)
RasterPlotFAULTLINETYPE_Buffer[is.na(RasterPlotFAULTLINETYPE_Buffer)] <- 0
RasterPlotFAULTLINETYPE_Buffer
#> class : RasterLayer
#> dimensions : 300, 600, 180000 (nrow, ncol, ncell)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : layer
#> values : 0, 1 (min, max)Make brick of all variables
EurekaAll_Stack <- stack(RasterPlotLandNow, RasterPlotGMTED_SAP_BINAIR, RasterPlotGEOAGE_Mean, RasterPlotLITHOLOGY, RasterPlotTEMP, RPEucDistTrans, RPEucDistFLTB, RasterPlotFAULTLINETYPE_Buffer, RPEucDistPlateBoundB, RasterPlotPRECIP, RPEucDistTrench, RPEucDistVolcB, RasterPlotVOLC_Buffer, RasterPlotTRANS_Buffer, RasterPlotTRENCH_Buffer, RasterPlotPLATE3TYPE)
EurekaAll_Brick <- brick(EurekaAll_Stack)
EurekaAll_Brick
#> class : RasterBrick
#> dimensions : 300, 600, 180000, 16 (nrow, ncol, ncell, nlayers)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 90, 150, -10, 20 (xmin, xmax, ymin, ymax)
#> crs : +proj=longlat +datum=WGS84 +no_defs
#> source : memory
#> names : landnu, gmted_sap01, geoage_sap01, lithology_sap01, annualmeantemp_sap01_g, transbuffer, fltbuffer, layer.1, plateboundbuffer, annualpre//on_sap01_g, trenchbuffer, volcbuffer, layer.2, layer.3, layer.4, ...
#> min values : 0.000000, 0.000000, 1.300000, 1.000000, 4.108334, 0.000000, 0.000000, 0.000000, 0.000000, 749.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, ...
#> max values : 1.000000e+00, 1.000000e+00, 6.000000e+02, 1.400000e+01, 2.864583e+01, 1.506163e+06, 2.687642e+06, 1.000000e+00, 1.294251e+06, 6.302000e+03, 1.472936e+06, 1.506296e+06, 1.000000e+00, 1.000000e+00, 1.000000e+00, ...
EurekaAll_Brick_df <- as.data.frame(EurekaAll_Brick)Change the names of each variable to make sense
names(EurekaAll_Brick_df)
#> [1] "landnu" "gmted_sap01"
#> [3] "geoage_sap01" "lithology_sap01"
#> [5] "annualmeantemp_sap01_g" "transbuffer"
#> [7] "fltbuffer" "layer.1"
#> [9] "plateboundbuffer" "annualprecipitation_sap01_g"
#> [11] "trenchbuffer" "volcbuffer"
#> [13] "layer.2" "layer.3"
#> [15] "layer.4" "layer.5"names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "landnu"] <- "Land"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "gmted_sap01"] <- "HigherThan1km"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "geoage_sap01"] <- "GeoMean"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "lithology_sap01"] <- "Lithology"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "annualmeantemp_sap01_g"] <- "Temp"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "annualprecipitation_sap01_g"] <- "Precip"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "transbuffer"] <- "DistTrans"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "fltbuffer"] <- "DistFault"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "layer.1"] <- "Faults"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "plateboundbuffer"] <- "DistPlateBound"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "trenchbuffer"] <- "DistTrench"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "volcbuffer"] <- "DistVolc"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "layer.2"] <- "Volc"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "layer.3"] <- "Trans"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "layer.4"] <- "Trench"
names(EurekaAll_Brick_df)[names(EurekaAll_Brick_df) == "layer.5"] <- "PlateBound"
names(EurekaAll_Brick_df)
#> [1] "Land" "HigherThan1km" "GeoMean" "Lithology"
#> [5] "Temp" "DistTrans" "DistFault" "Faults"
#> [9] "DistPlateBound" "Precip" "DistTrench" "DistVolc"
#> [13] "Volc" "Trans" "Trench" "PlateBound"See head of dataframe