6 Reconstruction 30Ma

Load packages

library(sp)
library(raster)
library(rpart)
library(DT)

Indicate input folder

InDir <- 'C:/Users/Linde/Desktop/Scriptie/Data per script/30MaScriptFinal (3)/'

load("C:/Users/Linde/Desktop/Scriptie/Data per script/30MaScriptFinal (3)/EurekaAll_Brick_df.RData")

Check reconstruction difference if removing precipitation 30Ma

See head of dataframe

datatable(head(Paleo30Good_Brick_df[1:5,],20))

Paleo30Good_Brick_df_NOPRECIP <- Paleo30Good_Brick_df

Paleo30Good_Brick_df_NOPRECIP$Precip[Paleo30Good_Brick_df_NOPRECIP$Precip >= 319] <- NA

summary(Paleo30Good_Brick_df_NOPRECIP$Precip);

##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
##      NA      NA      NA     NaN      NA      NA  180000

Predict30_RpartAll_NOPRECIP <- predict(Rpart.EurekaAll.Final, Paleo30Good_Brick_df_NOPRECIP, type = "class");
Predict30_RpartAll_df_NOPRECIP <- as.data.frame(Predict30_RpartAll_NOPRECIP);

summary(Predict30_RpartAll_df)

##  Predict30_RpartAll
##  0:176144          
##  1:  3856

summary(Predict30_RpartAll_df_NOPRECIP)

##  Predict30_RpartAll_NOPRECIP
##  0:176371                   
##  1:  3629

RECONSTRUCTION 30MA NO PRECIPITATION

Predict30_RpartAll_NOPRECIP <- predict(Rpart.EurekaAll.Final, Paleo30Good_Brick_df_NOPRECIP, type = "class")
Predict30_RpartAll_df_NOPRECIP <- as.data.frame(Predict30_RpartAll_NOPRECIP)

Get the rownames of data subsets

rownames_pred30_RpartAll_NOPRECIP <- rownames(Predict30_RpartAll_df_NOPRECIP)
rownames_pred30_numeric_RpartAll_NOPRECIP <- as.numeric(rownames_pred30_RpartAll_NOPRECIP)

Get coordinates of each cell in dataframe

Coordinates <- coordinates(EurekaAll_Brick)
Coordinates_df <- as.data.frame(Coordinates)

Get the coordinates of the predicted datasubsets

XCor_pred30_RpartAll_NOPRECIP <- Coordinates_df$x[rownames_pred30_numeric_RpartAll_NOPRECIP]
YCor_pred30_RpartAll_NOPRECIP <- Coordinates_df$y[rownames_pred30_numeric_RpartAll_NOPRECIP]

Get the coordinates into one file.

XYCor_pred30_RpartAll_NOPRECIP <- data.frame(XCor_pred30_RpartAll_NOPRECIP, YCor_pred30_RpartAll_NOPRECIP)

Get the coordinates and the 0s and 1s into one file.

XYZ_pred30_RpartAll_NOPRECIP <- data.frame(XYCor_pred30_RpartAll_NOPRECIP,Predict30_RpartAll_NOPRECIP)

Into raster

RasterPlot_pred30_RpartAll_NOPRECIP <- rasterFromXYZ(XYZ_pred30_RpartAll_NOPRECIP, res=c(0.1,0.1), crs="+proj=longlat +datum=WGS84 +no_defs ")

plot both

plot(RasterPlot_pred30_RpartAll, main="Predicted30")

plot(RasterPlot_pred30_RpartAll_NOPRECIP, main="Predicted30 NOPRECIP")