Summaries

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Scatter Chart by counties/sub-regions in Kenya

Trend Line for ART Current

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Loess Smoothed Fit for regional ART Current spread

Trend Line

Data Visualization

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Histogram for Viral Load Suppression

Smooth Linear Regression TB/HIV Coinfection

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Smooth Linear Regression TB/HIV Coinfection with Loess Smoothed Fit

Constraining Slope with stat_smooth

Density plots and Spatial Maps

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stat_density Example

Spatial Spread in Kenyan counties

[1] 25939.45

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Density and facet_wrap Predictions Together

Density and Scatterplot Overlay Using geom_density

Inference and Predictions

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stat_density Example

Inference and Predictions

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Map on Viral Load Suppression

[1] 71.97872

Density and Scatterplot Overlay Using geom_density

About the Dashboard

The Dashboard This dashboard is produced as part of the post-doctoral learning on Advanced Data Science

Data The HIV data used in this Dashboard has been extracted from Kenya District Health Information System 2 and is publicly available on https://hiskenya.org/dhis-web-commons/security/login.action. The dataset is in aggregate form and do not have patient identification.

The data was extracted with the following indicators; Period (Jan-2020 to Dec-2020), County Number of Clinical visits, Number Completed IPT in 12months, ART_Enrollment, Number Malnourished, Net Cohort On ART in 12 months, Number actively On ART, Presumed TB, Number screened for TB, Number Start on ART, TB Cases Tested for HIV, TB cases on HAART and viral load suppression

Packages library(ggplot2) library(plotly) library(plyr) library(flexdashboard) library(maptools) library(raster) library(dplyr) library(rgdal) library(ggmap) library(scales) library(readr) library(tidyverse) library(hrbrthemes)

Linear Prediction Result

Call: lm(formula = TB_onHAART ~ART_Enrollment)

Residuals: Min 1Q Median 3Q Max

-135.971 -5.862 -2.227 5.114 87.565

Coefficients: Estimate Std. Error t value Pr(>|t|)

(Intercept) 4.867440 0.722345 6.738 3.97e-11 ***

AnnimationHIV$ART_Enrollment 0.099689 0.001832 54.416 < 2e-16 ***

Deployment code - https://github.com/codhiambo2/Capstone_Project/blob/main/README.md

Questions and Feedback

For any question or feedback you can reach out to me: