version 3 tribune 2 graph
James Lin
5/9/2021
Add new mexico variables
1 Set up
1.1 1) Load packages
1.2 2) Import data
1.3 3) Data Wrangling
1.4 4) Theme James
1.5 5) Depth Wrangling
2 Extra
2.2 Correlation Matrix
## [1] "number" "depths"
## [3] "depth" "treatment"
## [5] "replication" "odad_6"
## [7] "respiration" "horizon"
## [9] "clay" "nh4"
## [11] "no3" "t_np"
## [13] "t_nm" "to_cp"
## [15] "to_cg" "ca"
## [17] "cu" "mg"
## [19] "mn" "na"
## [21] "p" "p_h"
## [23] "carbonate" "k"
## [25] "zn" "fe"
## [27] "gwc" "odad_28"
## [29] "bd" "ac"
## [31] "x20wsa2000" "x20wsa250"
## [33] "x20wsa53" "x20wsa20"
## [35] "x20mwd" "total_fame_nmol_per_g_soil"
## [37] "bacteria" "anaerobic_bacteria"
## [39] "gram_bacteria" "gram_bacteria_2"
## [41] "actinomycetes" "amf"
## [43] "fungi" "f_b_ratio"
## [45] "glucosidase" "glucosaminidase"
## [47] "acidphosphotase" "alkphosphatase"
## [49] "arylsulfatase" "phosphodiesterase"
## [51] "protein" "inn"
## [53] "hotkcl" "pmc"
## [55] "pmn"
2.3 Corrplot matrix
## png
## 23 Biological Graphs
3.1 Total Biomass
3.1.1 Depth
## Warning: Ignoring unknown parameters: se
## [1] TRUE3.1.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 189491 63164 3 12 6.115 0.009113 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 102621 34207 3 12 28.85 9.046e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 19085 6361.6 3 9 22.981 0.0001487 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.1.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.2 Bacteria
3.2.1 Depth
## Warning: Ignoring unknown parameters: se
## [1] TRUE3.2.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 189491 63164 3 12 6.115 0.009113 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 102621 34207 3 12 28.85 9.046e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 19085 6361.6 3 9 22.981 0.0001487 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.2.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.3 Anearobic Bacteria
3.3.1 Depth
## Warning: Ignoring unknown parameters: se
## [1] TRUE3.3.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 86.6 28.867 3 12 6.7595 0.006387 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 20.677 6.8924 3 12 22.875 2.978e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 5.3565 1.7855 3 9 30.791 4.611e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.3.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.4 Gram Positive Bacteria
3.4.1 Depth
## Warning: Ignoring unknown parameters: se
3.4.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 189491 63164 3 12 6.115 0.009113 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 102621 34207 3 12 28.85 9.046e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 19085 6361.6 3 9 22.981 0.0001487 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.4.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.5 Gram Negative Bacteria
3.5.1 Depth
## Warning: Ignoring unknown parameters: se
## [1] TRUE3.5.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 2543.2 847.74 3 12 4.7946 0.02026 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 1400.3 466.78 3 12 27.5 1.161e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 186.26 62.087 3 9 16.197 0.0005695 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.5.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.6 Actinomycetes
3.6.1 Depth
## Warning: Ignoring unknown parameters: se
## [1] TRUE3.6.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 735.95 245.32 3 9 14.652 0.0008254 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 436.66 145.55 3 12 36.944 2.441e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 86.222 28.741 3 9 14.487 0.0008604 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.6.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.7 Fungi
3.7.1 Depth
## Warning: Ignoring unknown parameters: se
## [1] TRUE3.7.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 4616.5 1538.8 3 12 7.243 0.004956 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 2763.4 921.13 3 12 26.506 1.404e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 721.07 240.35 3 9 24.15 0.0001223 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.7.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.8 AMF
3.8.1 Depth
## Warning: Ignoring unknown parameters: se
## [1] TRUE3.8.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 667.28 222.43 3 9 69.462 1.52e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 255.85 85.283 3 12 106.95 6.34e-09 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 283.25 94.415 3 9 26.515 8.429e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.8.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.9 F:B ratio
3.9.1 Depth
## Warning: Ignoring unknown parameters: se
## [1] TRUE3.9.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 0.064431 0.021477 3 9 34.086 3.044e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 0.229 0.076334 3 12 16.282 0.0001573 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 0.35035 0.11678 3 9 12.95 0.001292 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.9.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.10 B-Glucosidase
3.10.1 Depth
## Warning: Ignoring unknown parameters: se
3.10.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 3387.9 1129.3 3 9 38.163 1.911e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 149.9 49.967 3 9 28.546 6.265e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 70.458 23.486 3 9 14.908 0.0007746 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.10.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.11 B-Glucosaminidase
3.11.1 Depth
## Warning: Ignoring unknown parameters: se
3.11.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 142.33 47.443 3 9 6.5357 0.01224 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 69.963 23.321 3 9 37.086 2.151e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 37.793 12.598 3 12 57.232 2.214e-07 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.11.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.12 Acid Phosphatase
3.12.1 Depth
## Warning: Ignoring unknown parameters: se
3.12.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 25203 8401.1 3 9 68.776 1.586e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 38131 12710 3 12 227.98 7.651e-11 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 14014 4671.2 3 9 47.824 7.443e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.12.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.13 Alkaline Phosphatase
3.13.1 Depth
## Warning: Ignoring unknown parameters: se
3.13.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 7999.7 2666.6 3 12 85.751 2.254e-08 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 6058.2 2019.4 3 9 23.554 0.000135 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 2255.9 751.97 3 12 45.845 7.558e-07 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.13.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.14 Arylsulfatase
3.14.1 Depth
## Warning: Ignoring unknown parameters: se
3.14.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 1498.5 499.51 3 12 27.617 1.135e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 1663.5 554.49 3 12 65.797 1.013e-07 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 961.66 320.55 3 12 33.32 4.236e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.14.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.15 Phosphodiesterase
3.15.1 Depth
## Warning: Ignoring unknown parameters: se
3.15.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 2105.3 701.78 3 12 80.958 3.129e-08 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 911.12 303.71 3 12 24.854 1.954e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 954.71 318.24 3 12 63.415 1.247e-07 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.15.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
3.16 Protein Content
3.16.1 Depth
## Warning: Ignoring unknown parameters: se
3.16.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 3.3534 1.1178 3 9 1.2884 0.3365## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 5.5498 1.8499 3 12 7.0135 0.005583 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 2.8982 0.96608 3 9 9.4418 0.003846 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.16.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"## Warning: Removed 2 rows containing missing values (geom_bar).
3.17 Permanganate Oxidizable Organic Carbon
3.17.1 Depth
## Warning: Ignoring unknown parameters: se
3.17.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 49370 16457 3 9 3.6442 0.05729 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 30441 10147 3 12 4.9773 0.01802 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 25077 8359 3 12 2.6434 0.09693 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.17.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"## Warning: Removed 2 rows containing missing values (geom_bar).
3.18 Soil Respiration
3.18.1 Depth
## Warning: Ignoring unknown parameters: se
3.18.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 12.997 4.3325 3 9 54.155 4.401e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 1.5456 0.51521 3 12 108.39 5.867e-09 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 0.30395 0.10132 3 11 23.969 3.982e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 13.18.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4 Chemical Graphs
4.1 NH4+
4.1.1 Depth
## Warning: Ignoring unknown parameters: se
4.1.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 14.255 4.7516 3 9 32.176 3.855e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 0.013535 0.0045115 3 9 41.534 1.344e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 0.016061 0.0053536 3 9 6.8865 0.01047 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 14.1.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4.2 NO3-
4.2.1 Depth
## Warning: Ignoring unknown parameters: se
4.2.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 299.44 99.814 3 12 28.588 9.487e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 5.8475 1.9492 3 9 91.372 4.648e-07 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 2.6098 0.86995 3 8.9998 624.04 9.361e-11 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 14.2.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4.3 Total Nitrogen
4.3.1 Depth
## Warning: Ignoring unknown parameters: se
4.3.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 0.005825 0.0019417 3 9 2.0144 0.1825## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 0.0053188 0.0017729 3 9 22.593 0.000159 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 0.0050687 0.0016896 3 12 4.9755 0.01805 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 14.3.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4.4 Total Organic Carbon
4.4.1 Depth
## Warning: Ignoring unknown parameters: se
4.4.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 0.54292 0.18097 3 9 3.3939 0.0673 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 1.6672 0.55574 3 12 175.73 3.53e-10 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 1.1952 0.39842 3 12 19.392 6.773e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 14.4.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4.5 Extractable Ca Content (g/kg)
4.5.1 Depth
## Warning: Ignoring unknown parameters: se
4.5.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 2.1731 0.72438 3 12 6.5772 0.007048 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 13.608 4.536 3 12 95.684 1.203e-08 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 6.7807 2.2602 3 9 3462.3 4.274e-14 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 14.5.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4.6 Extractable Cu Content (mg/kg)
4.6.1 Depth
## Warning: Ignoring unknown parameters: se
4.6.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 15.89 5.2967 3 12 3.2916 0.05806 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 6.3025 2.1008 3 12 5.6335 0.01205 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 3.9719 1.324 3 12 1.3242 0.31224.6.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4.7 Extractable Mg Content (mg/kg)
4.7.1 Depth
## Warning: Ignoring unknown parameters: se
4.7.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 100956 33652 3 12 13.068 0.0004342 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 140357 46786 3 12 7.0323 0.005528 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 65781 21927 3 9 50.347 5.992e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 14.7.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4.8 Extractable Mn Content (mg/kg)
4.8.1 Depth
## Warning: Ignoring unknown parameters: se
4.8.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 7379.5 2459.8 3 12 56.61 2.353e-07 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 856.27 285.42 3 12 17.173 0.000122 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 145.76 48.587 3 9 72.331 1.277e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 14.8.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4.9 Extractable Na Content (mg/kg)
4.9.1 Depth
## Warning: Ignoring unknown parameters: se
4.9.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 6629.8 2209.9 3 9 188.17 1.953e-08 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 6475.5 2158.5 3 9 351.64 1.214e-09 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 10298 3432.8 3 9 320.8 1.828e-09 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 14.9.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4.10 Extractable P Content (mg/kg)
4.10.1 Depth
## Warning: Ignoring unknown parameters: se
4.10.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 54700 18233 3 12 71.345 6.415e-08 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 19556 6518.8 3 12 107.62 6.115e-09 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 4593.3 1531.1 3 9 53.484 4.64e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 14.10.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4.11 Extractable K Content (mg/kg)
4.11.1 Depth
## Warning: Ignoring unknown parameters: se
4.11.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 200127 66709 3 9 42.927 1.171e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 171835 57278 3 12 29.509 8.038e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 166604 55535 3 12 174.34 3.698e-10 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 14.11.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4.12 Extractable Zn Content (mg/kg)
4.12.1 Depth
## Warning: Ignoring unknown parameters: se
4.12.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 2.3025 0.7675 3 9 7.5699 0.007834 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 1.4275 0.47583 3 12 15.432 0.0002024 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 0.27687 0.092292 3 12 2.5028 0.10894.12.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4.13 Extractable Fe Content (mg/kg)
4.13.1 Depth
## Warning: Ignoring unknown parameters: se
4.13.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 9161.9 3054 3 12 55.311 2.678e-07 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 567.42 189.14 3 12 6.564 0.007099 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 79.177 26.392 3 9 54.223 4.378e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 14.13.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4.14 pH
4.14.1 Depth
## Warning: Ignoring unknown parameters: se
4.14.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 16.041 5.3471 3 9 80.246 8.16e-07 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 4.4331 1.4777 3 9 24.916 0.000108 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 2.5522 0.85074 3 9 240.73 6.555e-09 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 14.14.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
4.15 Water Moisture
4.15.1 Depth
## Warning: Ignoring unknown parameters: se
4.15.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 410.58 136.86 3 9 19.877 0.0002617 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 284.99 94.998 3 12 198.81 1.711e-10 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 280.69 93.562 3 12 727.04 7.851e-14 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 14.15.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
5 Physical graphs
5.1 Clay
5.1.1 Depth
## Warning: Ignoring unknown parameters: se
5.1.1.1 ANOVA
## [1] "0-5 cm"## Warning in anova.lm(clay5): ANOVA F-tests on an essentially perfect fit are
## unreliable## Analysis of Variance Table
##
## Response: clay
## Df Sum Sq Mean Sq F value Pr(>F)
## treatment 3 35 11.667 5.0457e+30 < 2.2e-16 ***
## Residuals 12 0 0.000
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Warning in anova.lm(clay10): ANOVA F-tests on an essentially perfect fit are
## unreliable## Analysis of Variance Table
##
## Response: clay
## Df Sum Sq Mean Sq F value Pr(>F)
## treatment 3 35 11.667 5.0457e+30 < 2.2e-16 ***
## Residuals 12 0 0.000
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Warning in anova.lm(clay15): ANOVA F-tests on an essentially perfect fit are
## unreliable## Analysis of Variance Table
##
## Response: clay
## Df Sum Sq Mean Sq F value Pr(>F)
## treatment 3 107 35.667 1.3779e+31 < 2.2e-16 ***
## Residuals 12 0 0.000
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 15.1.1.2 Stat
## [1] "0-5 cm"## Warning in summary.lm(object, ...): essentially perfect fit: summary may be
## unreliable
## [1] "5-10 cm"## Warning in summary.lm(object, ...): essentially perfect fit: summary may be
## unreliable
## [1] "10-15 cm"
5.2 20 minute MWD
5.2.1 Depth
## Warning: Ignoring unknown parameters: se
5.2.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 1.3089 0.43629 3 12 19.859 6.026e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 2.3165 0.77216 3 9 12.587 0.001429 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 2.8002 0.93339 3 9 25.69 9.563e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 15.2.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
6 New Mexico graphs
6.1 Soil Inorganic Nitrogen
6.1.1 Depth
## Warning: Ignoring unknown parameters: se
6.1.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 9232 3077.3 3 12 15.919 0.000175 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 2.6395 0.87982 3 9 14.714 0.0008128 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 1.8483 0.61611 3 9 11.874 0.001756 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 16.1.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
6.2 Hot KCl
6.2.1 Depth
## Warning: Ignoring unknown parameters: se
6.2.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 9232 3077.3 3 12 15.919 0.000175 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 2.6395 0.87982 3 9 14.714 0.0008128 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 1.8483 0.61611 3 9 11.874 0.001756 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 16.2.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
6.3 PMC
6.3.1 Depth
## Warning: Ignoring unknown parameters: se
6.3.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 4454.3 1484.8 3 9 3.0878 0.08258 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 1867.3 622.45 3 12 6.05 0.009456 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 639.78 213.26 3 9 11.496 0.001967 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 16.3.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
6.4 PMN
6.4.1 Depth
## Warning: Ignoring unknown parameters: se
6.4.1.1 ANOVA
## [1] "0-5 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 1217.8 405.92 3 9 2.7279 0.1063## [1] "5-10 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 253.61 84.537 3 9 9.899 0.003284 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## [1] "10-15 cm"## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## treatment 32.045 10.682 3 12 8.2319 0.003041 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 16.4.1.2 Stat
## [1] "0-5 cm"
## [1] "5-10 cm"
## [1] "10-15 cm"
2.1 Comments