Data extraction

For this exercise, we use crime data for the city of Chicago which are available from 2001 onwards on the city’s open data portal. Crime data for city of Chicago available from their open data portal at: https://data.cityofchicago.org/. To make analysis manageable, we utilized the past one year of data from the current date.

R has the capability of reading files and data tables directly from the Web. We can do this by specifying the connection string instead of the file name in the read_csv() function. We can access the Chicago crime data from the following url: https://data.cityofchicago.org/api/views/x2n5-8w5q/rows.csv?accessType=DOWNLOAD

library(tidyverse)
## Warning: package 'tidyverse' was built under R version 3.6.3
## -- Attaching packages --------------------------------------- tidyverse 1.3.0 --
## v ggplot2 3.3.3     v purrr   0.3.4
## v tibble  3.1.0     v dplyr   1.0.5
## v tidyr   1.1.3     v stringr 1.4.0
## v readr   1.4.0     v forcats 0.5.1
## Warning: package 'ggplot2' was built under R version 3.6.3
## Warning: package 'tibble' was built under R version 3.6.3
## Warning: package 'tidyr' was built under R version 3.6.3
## Warning: package 'readr' was built under R version 3.6.3
## Warning: package 'purrr' was built under R version 3.6.3
## Warning: package 'dplyr' was built under R version 3.6.3
## Warning: package 'forcats' was built under R version 3.6.3
## -- Conflicts ------------------------------------------ tidyverse_conflicts() --
## x dplyr::filter() masks stats::filter()
## x dplyr::lag()    masks stats::lag()
type = cols( `CASE#` = col_character(),
           `DATE  OF OCCURRENCE` = col_datetime(format = "%m/%d/%Y %I:%M:%S %p"),
           BLOCK = col_factor(),
           IUCR = col_factor(),
           `PRIMARY DESCRIPTION` = col_factor(),
           `SECONDARY DESCRIPTION` = col_factor(),
           `LOCATION DESCRIPTION` = col_factor(),
           ARREST = col_factor(),
           DOMESTIC = col_factor(),
           BEAT = col_factor(),
           WARD = col_factor(),
           `FBI CD` = col_factor(),
           `X COORDINATE` = col_double(),
           `Y COORDINATE` = col_double(),
           LATITUDE = col_double(),
           LONGITUDE = col_double(),
           LOCATION = col_character()
)

url.data <- "https://data.cityofchicago.org/api/views/x2n5-8w5q/rows.csv?accessType=DOWNLOAD"

crime_raw <- read_csv(url.data, na = '', col_types = type)

#Fixing column names
names(crime_raw) <- str_to_lower(names(crime_raw)) %>%
  str_replace_all(" ", "_") %>%
  str_replace_all("__", "_") %>%
  str_replace_all("#", "_num")

Data Exploration and pre-processing

Before we start playing with data, it is important to understand how the data are organized, what fields are present in the table, and how they are stored. We can investigate the internal structure of this data easily since it’s stored as a tibble.

#Print out the tibble
crime_raw
## # A tibble: 199,373 x 17
##    case_num date_of_occurrence  block   iucr  primary_descrip~ secondary_descri~
##    <chr>    <dttm>              <fct>   <fct> <fct>            <fct>            
##  1 JE194484 2021-04-04 10:00:00 035XX ~ 0820  THEFT            $500 AND UNDER   
##  2 JE163990 2020-11-23 15:05:00 073XX ~ 0820  THEFT            $500 AND UNDER   
##  3 JE195443 2021-04-01 13:29:00 019XX ~ 0820  THEFT            $500 AND UNDER   
##  4 JE194793 2021-03-08 21:00:00 050XX ~ 0460  BATTERY          SIMPLE           
##  5 JD220983 2020-04-28 16:00:00 034XX ~ 0610  BURGLARY         FORCIBLE ENTRY   
##  6 JE143283 2021-02-16 17:35:00 017XX ~ 0460  BATTERY          SIMPLE           
##  7 JD390623 2020-09-30 12:00:00 018XX ~ 0810  THEFT            OVER $500        
##  8 JD381795 2020-09-13 12:00:00 015XX ~ 0810  THEFT            OVER $500        
##  9 JE148785 2020-12-04 11:50:00 020XX ~ 1153  DECEPTIVE PRACT~ FINANCIAL IDENTI~
## 10 JD219381 2020-04-28 19:15:00 085XX ~ 1330  CRIMINAL TRESPA~ TO LAND          
## # ... with 199,363 more rows, and 11 more variables:
## #   location_description <fct>, arrest <fct>, domestic <fct>, beat <fct>,
## #   ward <fct>, fbi_cd <fct>, x_coordinate <dbl>, y_coordinate <dbl>,
## #   latitude <dbl>, longitude <dbl>, location <chr>
#Understanding the data 
str(crime_raw)
## spec_tbl_df[,17] [199,373 x 17] (S3: spec_tbl_df/tbl_df/tbl/data.frame)
##  $ case_num             : chr [1:199373] "JE194484" "JE163990" "JE195443" "JE194793" ...
##  $ date_of_occurrence   : POSIXct[1:199373], format: "2021-04-04 10:00:00" "2020-11-23 15:05:00" ...
##  $ block                : Factor w/ 26965 levels "035XX W WALNUT ST",..: 1 2 3 4 5 6 7 8 9 10 ...
##  $ iucr                 : Factor w/ 306 levels "0820","0460",..: 1 1 1 2 3 2 4 4 5 6 ...
##  $ primary_description  : Factor w/ 32 levels "THEFT","BATTERY",..: 1 1 1 2 3 2 1 1 4 5 ...
##  $ secondary_description: Factor w/ 282 levels "$500 AND UNDER",..: 1 1 1 2 3 2 4 4 5 6 ...
##  $ location_description : Factor w/ 131 levels "VACANT LOT / LAND",..: 1 2 2 2 3 4 3 5 NA 6 ...
##  $ arrest               : Factor w/ 2 levels "N","Y": 1 1 1 1 1 1 1 2 1 1 ...
##  $ domestic             : Factor w/ 2 levels "N","Y": 1 1 1 1 1 1 1 1 1 1 ...
##  $ beat                 : Factor w/ 274 levels "1123","334","131",..: 1 2 3 4 5 6 7 8 9 10 ...
##  $ ward                 : Factor w/ 50 levels "28","7","3","47",..: 1 2 3 4 5 6 7 8 7 9 ...
##  $ fbi_cd               : Factor w/ 26 levels "06","08B","05",..: 1 1 1 2 3 2 1 1 4 5 ...
##  $ x_coordinate         : num [1:199373] NA NA NA NA 1154351 ...
##  $ y_coordinate         : num [1:199373] NA NA NA NA 1868931 ...
##  $ latitude             : num [1:199373] NA NA NA NA 41.8 ...
##  $ longitude            : num [1:199373] NA NA NA NA -87.7 ...
##  $ location             : chr [1:199373] NA NA NA NA ...
##  - attr(*, "spec")=
##   .. cols(
##   ..   `CASE#` = col_character(),
##   ..   `DATE  OF OCCURRENCE` = col_datetime(format = "%m/%d/%Y %I:%M:%S %p"),
##   ..   BLOCK = col_factor(levels = NULL, ordered = FALSE, include_na = FALSE),
##   ..   IUCR = col_factor(levels = NULL, ordered = FALSE, include_na = FALSE),
##   ..   `PRIMARY DESCRIPTION` = col_factor(levels = NULL, ordered = FALSE, include_na = FALSE),
##   ..   `SECONDARY DESCRIPTION` = col_factor(levels = NULL, ordered = FALSE, include_na = FALSE),
##   ..   `LOCATION DESCRIPTION` = col_factor(levels = NULL, ordered = FALSE, include_na = FALSE),
##   ..   ARREST = col_factor(levels = NULL, ordered = FALSE, include_na = FALSE),
##   ..   DOMESTIC = col_factor(levels = NULL, ordered = FALSE, include_na = FALSE),
##   ..   BEAT = col_factor(levels = NULL, ordered = FALSE, include_na = FALSE),
##   ..   WARD = col_factor(levels = NULL, ordered = FALSE, include_na = FALSE),
##   ..   `FBI CD` = col_factor(levels = NULL, ordered = FALSE, include_na = FALSE),
##   ..   `X COORDINATE` = col_double(),
##   ..   `Y COORDINATE` = col_double(),
##   ..   LATITUDE = col_double(),
##   ..   LONGITUDE = col_double(),
##   ..   LOCATION = col_character()
##   .. )
#Summarize the data
summary(crime_raw)
##    case_num         date_of_occurrence           
##  Length:199373      Min.   :2020-04-06 05:05:00  
##  Class :character   1st Qu.:2020-07-07 10:30:00  
##  Mode  :character   Median :2020-09-25 22:21:00  
##                     Mean   :2020-09-30 20:31:31  
##                     3rd Qu.:2020-12-23 11:36:00  
##                     Max.   :2021-04-05 23:50:00  
##                                                  
##                                  block             iucr       
##  001XX N STATE ST                   :   345   0486   : 19802  
##  0000X W TERMINAL ST                :   270   0820   : 16104  
##  064XX S DR MARTIN LUTHER KING JR DR:   224   1310   : 12331  
##  008XX N MICHIGAN AVE               :   169   0560   : 11219  
##  033XX W FILLMORE ST                :   158   1320   : 10850  
##  065XX S DR MARTIN LUTHER KING JR DR:   143   0460   : 10125  
##  (Other)                            :198064   (Other):118942  
##          primary_description             secondary_description
##  BATTERY           :39167    SIMPLE                 : 21494   
##  THEFT             :36064    DOMESTIC BATTERY SIMPLE: 19802   
##  CRIMINAL DAMAGE   :24452    $500 AND UNDER         : 16104   
##  DECEPTIVE PRACTICE:18538    TO PROPERTY            : 12331   
##  ASSAULT           :17961    TO VEHICLE             : 11391   
##  OTHER OFFENSE     :11768    OVER $500              :  9897   
##  (Other)           :51423    (Other)                :108354   
##                              location_description arrest     domestic  
##  STREET                                :49494     N:171586   N:159512  
##  APARTMENT                             :37243     Y: 27787   Y: 39861  
##  RESIDENCE                             :37227                          
##  SIDEWALK                              :11888                          
##  PARKING LOT / GARAGE (NON RESIDENTIAL): 5358                          
##  (Other)                               :57074                          
##  NA's                                  : 1089                          
##       beat             ward            fbi_cd       x_coordinate    
##  421    :  1810   28     :  9954   06     :36064   Min.   :1092706  
##  511    :  1707   27     :  8429   08B    :31271   1st Qu.:1152638  
##  624    :  1673   24     :  8107   14     :24452   Median :1166296  
##  1834   :  1596   6      :  8093   11     :17643   Mean   :1164704  
##  1112   :  1542   8      :  6938   08A    :14771   3rd Qu.:1176743  
##  631    :  1527   (Other):157842   26     :12537   Max.   :1205119  
##  (Other):189518   NA's   :    10   (Other):62635   NA's   :2112     
##   y_coordinate        latitude       longitude        location        
##  Min.   :1813897   Min.   :41.64   Min.   :-87.93   Length:199373     
##  1st Qu.:1857620   1st Qu.:41.76   1st Qu.:-87.72   Class :character  
##  Median :1889757   Median :41.85   Median :-87.67   Mode  :character  
##  Mean   :1884963   Mean   :41.84   Mean   :-87.67                     
##  3rd Qu.:1908713   3rd Qu.:41.91   3rd Qu.:-87.63                     
##  Max.   :1951527   Max.   :42.02   Max.   :-87.52                     
##  NA's   :2112      NA's   :2112    NA's   :2112
#Identidy duplicates 
crime_raw %>%
  group_by(case_num) %>%
  mutate(count = n()) %>%
  filter(count > 1)
## # A tibble: 56 x 18
## # Groups:   case_num [26]
##    case_num date_of_occurrence  block   iucr  primary_descript~ secondary_descr~
##    <chr>    <dttm>              <fct>   <fct> <fct>             <fct>           
##  1 JD426385 2020-11-09 17:50:00 036XX ~ 0110  HOMICIDE          FIRST DEGREE MU~
##  2 JD364485 2020-09-12 03:04:00 001XX ~ 0110  HOMICIDE          FIRST DEGREE MU~
##  3 JD364485 2020-09-12 03:09:00 001XX ~ 0110  HOMICIDE          FIRST DEGREE MU~
##  4 JD426385 2020-11-09 17:50:00 036XX ~ 0110  HOMICIDE          FIRST DEGREE MU~
##  5 JE154771 2021-02-28 05:03:00 086XX ~ 0110  HOMICIDE          FIRST DEGREE MU~
##  6 JD428578 2020-11-11 18:25:00 013XX ~ 0110  HOMICIDE          FIRST DEGREE MU~
##  7 JE154771 2021-02-28 05:05:00 086XX ~ 0110  HOMICIDE          FIRST DEGREE MU~
##  8 JD428578 2020-11-12 02:24:00 013XX ~ 0110  HOMICIDE          FIRST DEGREE MU~
##  9 JD397606 2020-10-17 13:51:00 021XX ~ 0110  HOMICIDE          FIRST DEGREE MU~
## 10 JD397606 2020-10-13 01:07:00 021XX ~ 0110  HOMICIDE          FIRST DEGREE MU~
## # ... with 46 more rows, and 12 more variables: location_description <fct>,
## #   arrest <fct>, domestic <fct>, beat <fct>, ward <fct>, fbi_cd <fct>,
## #   x_coordinate <dbl>, y_coordinate <dbl>, latitude <dbl>, longitude <dbl>,
## #   location <chr>, count <int>

The data are stored at a crime incident global, that is, there is observation for each crime incident and the data table. Each incident has a unique identifier associated with it which is stored in the case_number variable. By definition then, case_number should have all unique values however we see that some instances are duplicated, i.e., there are two or mor rows which have the same case value. For example, there are two rows in the data that have a case value equal to “JC438604”.

#Get row names for display
get.row <- t(filter(crime_raw, case_num == 'JD364485'))

#Create data example for duplicates 
JD364485 <- as_tibble(t(filter(crime_raw, case_num == 'JD364485')), .name_repair = NULL, validate = NULL)
## Warning: The `x` argument of `as_tibble.matrix()` must have unique column names if `.name_repair` is omitted as of tibble 2.0.0.
## Using compatibility `.name_repair`.
#Add row names and reorganizing
JD364485 %>% 
  mutate(Variable = rownames(get.row)) %>%
  select(Variable, V1, V2)
## # A tibble: 17 x 3
##    Variable              V1                          V2                         
##    <chr>                 <chr>                       <chr>                      
##  1 case_num              JD364485                    JD364485                   
##  2 date_of_occurrence    2020-09-12 03:04:00         2020-09-12 03:09:00        
##  3 block                 001XX N PINE AVE            001XX N PINE AVE           
##  4 iucr                  0110                        0110                       
##  5 primary_description   HOMICIDE                    HOMICIDE                   
##  6 secondary_description FIRST DEGREE MURDER         FIRST DEGREE MURDER        
##  7 location_description  STREET                      STREET                     
##  8 arrest                Y                           Y                          
##  9 domestic              N                           N                          
## 10 beat                  1523                        1523                       
## 11 ward                  29                          29                         
## 12 fbi_cd                01A                         01A                        
## 13 x_coordinate          1139477                     1139477                    
## 14 y_coordinate          1900584                     1900584                    
## 15 latitude              41.88331                    41.88331                   
## 16 longitude             -87.76329                   -87.76329                  
## 17 location              (41.883310937, -87.7632939~ (41.883310937, -87.7632939~

These duplicated rows need to be removed. Since the differences only exist in one variable and the difference is minor, these duplications are likely a recording error. We can exlude the duplicated case_number’s with the distinct command inside the of the dplyr::filter command function

#Remove duplicates
crime_no_dup <- filter(distinct(crime_raw, case_num, .keep_all = TRUE))

#Double checking 
crime_no_dup %>%
  group_by(case_num) %>%
  summarize(count = n()) %>%
  filter(count > 1)
## # A tibble: 0 x 2
## # ... with 2 variables: case_num <chr>, count <int>

The date_of_occurrence gives an approximate date and time stamp as to when the crime incident might have happened. This variable was initially read in as a character, but I used the col_datetime() designation with the correct format to make R recognize that this is in fact a date.

crime_no_dup %>% 
  select(date_of_occurrence) %>% 
  head()
## # A tibble: 6 x 1
##   date_of_occurrence 
##   <dttm>             
## 1 2021-04-04 10:00:00
## 2 2020-11-23 15:05:00
## 3 2021-04-01 13:29:00
## 4 2021-03-08 21:00:00
## 5 2020-04-28 16:00:00
## 6 2021-02-16 17:35:00
crime_no_dup %>% 
  select(date_of_occurrence) %>% 
  tail()
## # A tibble: 6 x 1
##   date_of_occurrence 
##   <dttm>             
## 1 2020-10-22 12:00:00
## 2 2020-10-25 12:00:00
## 3 2020-11-07 22:00:00
## 4 2020-11-17 16:15:00
## 5 2020-12-08 19:22:00
## 6 2020-11-17 20:45:00

The timezone for date_of_occurrence should be America/Chicago, even though the timezone is stored in R as Coordinated Universal Time (UTC). Time zone is actually unnecessary since all of the crimes committed occured in the same time zone. As such, I’m going to leave the timezone as UTC for this analysis. Moreover, setting the time zone to America/Chicago coerces four date_of_occurrence to NA since March 1, 2020 02:00:00 doesn’t exist (thank you daylight savings). As there were definitely crimes committed those records should remain in the data set.

R understands the data stored in the date_of_occurrence column is a date and time stamp. Processing the data a bit further we can separate the time stamps from the date part using the functions from the lubridate library.

The frequency of crimes is probably not consistent throughout the day. There could be certain time intervals of the day where criminal activity is more prevalent compared to other intervals. To check this, we can bucket the timestamps into a few categories and then see the distribution the buckets. As an example we create four 6-hour time windows beginning at midnight to bucket the time stamps. The four time intervals we get are midnight to 6 AM, 6 AM to noon, noon to 6 PM, and 6 PM to midnight.

For bucketing we first create variable bins using the four time intervals mentioned above. Once the bins are created the next step is to match each timestamp in the data to one of these time enter this can be done using the cut function.

library(lubridate)
## Warning: package 'lubridate' was built under R version 3.6.3
## 
## Attaching package: 'lubridate'
## The following objects are masked from 'package:base':
## 
##     date, intersect, setdiff, union
#Removing timestamp from datetime and place in separate column
crime_clean <- crime_no_dup %>%
  mutate(time = hms::as.hms(hour(date_of_occurrence) * 60 + minute(date_of_occurrence)), 
         date = date(date_of_occurrence), 
         time_group = cut(as.numeric(time), breaks = c(0, 6*60, 12*60, 18*60, 23*60+59),labels=c("00-06","06-12","12-18","18-00"), include.lowest = TRUE))
## Warning: `as.hms()` was deprecated in hms 0.5.0.
## Please use `as_hms()` instead.
crime_clean %>% 
  select(case_num, date_of_occurrence, date, time, time_group)
## # A tibble: 199,343 x 5
##    case_num date_of_occurrence  date       time   time_group
##    <chr>    <dttm>              <date>     <time> <fct>     
##  1 JE194484 2021-04-04 10:00:00 2021-04-04 10'00" 06-12     
##  2 JE163990 2020-11-23 15:05:00 2020-11-23 15'05" 12-18     
##  3 JE195443 2021-04-01 13:29:00 2021-04-01 13'29" 12-18     
##  4 JE194793 2021-03-08 21:00:00 2021-03-08 21'00" 18-00     
##  5 JD220983 2020-04-28 16:00:00 2020-04-28 16'00" 12-18     
##  6 JE143283 2021-02-16 17:35:00 2021-02-16 17'35" 12-18     
##  7 JD390623 2020-09-30 12:00:00 2020-09-30 12'00" 06-12     
##  8 JD381795 2020-09-13 12:00:00 2020-09-13 12'00" 06-12     
##  9 JE148785 2020-12-04 11:50:00 2020-12-04 11'50" 06-12     
## 10 JD219381 2020-04-28 19:15:00 2020-04-28 19'15" 18-00     
## # ... with 199,333 more rows
crime_clean %>% 
  group_by(time_group) %>% 
  summarize(count = n())
## # A tibble: 4 x 2
##   time_group count
##   <fct>      <int>
## 1 00-06      37001
## 2 06-12      45520
## 3 12-18      61539
## 4 18-00      55283

The distribution of crime incidents across the day suggests that crimes are more frequent during the latter half of the day.

One of the core aspects of data mining is deriving increasigly more information from the limited data that we have. We will see a few examples of what we mean by this as we go along. Let’s start with something simple and intuitive.

We can use the date of incidence to determine which day of the week and which month of the year the crime occurred. It is possible that there is a pattern in the way crimes occur (or are committed) depending on the day of the week and month.

crime_clean <- crime_clean %>%
         mutate(
           day = wday(date, label = TRUE, abbr = TRUE),
           month = month(date, label = TRUE, abbr = TRUE)
         )

crime_clean %>% 
  select(case_num, date_of_occurrence, day, month)
## # A tibble: 199,343 x 4
##    case_num date_of_occurrence  day   month
##    <chr>    <dttm>              <ord> <ord>
##  1 JE194484 2021-04-04 10:00:00 Sun   Apr  
##  2 JE163990 2020-11-23 15:05:00 Mon   Nov  
##  3 JE195443 2021-04-01 13:29:00 Thu   Apr  
##  4 JE194793 2021-03-08 21:00:00 Mon   Mar  
##  5 JD220983 2020-04-28 16:00:00 Tue   Apr  
##  6 JE143283 2021-02-16 17:35:00 Tue   Feb  
##  7 JD390623 2020-09-30 12:00:00 Wed   Sep  
##  8 JD381795 2020-09-13 12:00:00 Sun   Sep  
##  9 JE148785 2020-12-04 11:50:00 Fri   Dec  
## 10 JD219381 2020-04-28 19:15:00 Tue   Apr  
## # ... with 199,333 more rows

There are two fields in the data which provide the description of the crime incident. The first, primary description provides a broad category of the crime type and the second provides more detailed information about the first. We use the primary description to categorize different crime types.

#Specific crime types
(t<-crime_clean %>% 
  group_by(primary_description) %>%
  summarize(count = n()) %>%
  arrange(desc(count)))
## # A tibble: 32 x 2
##    primary_description count
##    <fct>               <int>
##  1 BATTERY             39167
##  2 THEFT               36064
##  3 CRIMINAL DAMAGE     24452
##  4 DECEPTIVE PRACTICE  18538
##  5 ASSAULT             17961
##  6 OTHER OFFENSE       11768
##  7 MOTOR VEHICLE THEFT 10191
##  8 WEAPONS VIOLATION    9002
##  9 BURGLARY             7994
## 10 ROBBERY              7694
## # ... with 22 more rows

The data contains 32 crime types; not all of which are mutually exclusive. We can combine two or more similar categories into one to reduce this number and make the analysis a bit more manageable.

crime_clean<-crime_clean %>%
  mutate(
    crime = fct_recode(primary_description,
                     "DAMAGE" = "CRIMINAL DAMAGE",
                     "DRUG" = "NARCOTICS",
                     "DRUG" = "OTHER NARCOTIC VIOLATION",
                     "FRAUD" = "DECEPTIVE PRACTICE",
                     "MVT" = "MOTOR VEHICLE THEFT",
                     "NONVIOLENT" = "LIQUOR LAW VIOLATION",
                     "NONVIOLENT" = "CONCEALED CARRY LICENSE VIOLATION",
                     "NONVIOLENT" = "STALKING",
                     "NONVIOLENT" = "INTIMIDATION",
                     "NONVIOLENT" = "GAMBLING",
                     "NONVIOLENT" = "OBSCENITY",
                     "NONVIOLENT" = "PUBLIC INDECENCY",
                     "NONVIOLENT" = "INTERFERENCE WITH PUBLIC OFFICER",
                     "NONVIOLENT" = "PUBLIC PEACE VIOLATION",
                     "NONVIOLENT" = "NON-CRIMINAL",
                     "OTHER" = "OTHER OFFENSE",
                     "SEX" = "HUMAN TRAFFICKING",
                     "SEX" = "CRIMINAL SEXUAL ASSAULT",
                     "SEX" = "SEX OFFENSE",
                     "SEX" = "CRIM SEXUAL ASSAULT",
                     "SEX" = "PROSTITUTION",
                     "TRESSPASS" = "CRIMINAL TRESPASS",
                     "VIOLENT" = "KIDNAPPING",
                     "VIOLENT" = "WEAPONS VIOLATION",
                     "VIOLENT" = "OFFENSE INVOLVING CHILDREN"
                     ),
    
    crime_type = fct_recode(crime,
                          "VIOLENT "= "SEX",
                          "VIOLENT" = "ARSON",
                          "VIOLENT" = "ASSAULT",
                          "VIOLENT" = "HOMICIDE",
                          "VIOLENT" = "VIOLENT",
                          "VIOLENT" = "BATTERY",
                          "NONVIOLENT" = "BURGLARY",
                          "NONVIOLENT" = "DAMAGE",
                          "NONVIOLENT" = "DRUG",
                          "NONVIOLENT" = "FRAUD",
                          "NONVIOLENT" = "MVT",
                          "NONVIOLENT" = "NONVIOLENT",
                          "NONVIOLENT" = "ROBBERY",
                          "NONVIOLENT" = "THEFT",
                          "NONVIOLENT" = "TRESSPASS",
                          "NONVIOLENT" = "OTHER"
                          )
  )
## Warning: Unknown levels in `f`: CRIM SEXUAL ASSAULT
crime_clean %>%
  group_by(crime) %>%
  summarize(count = n()) %>%
  arrange(desc(count))
## # A tibble: 17 x 2
##    crime      count
##    <fct>      <int>
##  1 BATTERY    39167
##  2 THEFT      36064
##  3 DAMAGE     24452
##  4 FRAUD      18538
##  5 ASSAULT    17961
##  6 OTHER      11768
##  7 VIOLENT    10833
##  8 MVT        10191
##  9 BURGLARY    7994
## 10 ROBBERY     7694
## 11 DRUG        5460
## 12 TRESSPASS   3399
## 13 NONVIOLENT  2267
## 14 SEX         2149
## 15 HOMICIDE     791
## 16 ARSON        614
## 17 RITUALISM      1
crime_clean %>%
  group_by(crime_type) %>%
  summarize(count = n()) %>%
  arrange(count)
## # A tibble: 4 x 2
##   crime_type    count
##   <fct>         <int>
## 1 "RITUALISM"       1
## 2 "VIOLENT "     2149
## 3 "VIOLENT"     69366
## 4 "NONVIOLENT" 127827

With a couple of basic variables in place, we can start with a few visualizations to see how, when, and where are the crime incidents occuring.

Visualizations

Visualizing data is a powerful way to derive high-level insights about the underlying patterns in the data. Visualizations provide helpful clues as to where we need to investigate further. To see a few examples, we start with some simple plots of variables we processed in the previous section using the powerful ggplot2 library.

library(scales)
## Warning: package 'scales' was built under R version 3.6.3
## 
## Attaching package: 'scales'
## The following object is masked from 'package:purrr':
## 
##     discard
## The following object is masked from 'package:readr':
## 
##     col_factor
crime_clean %>% 
  group_by(crime) %>%
  summarise(count = n()) %>%
  ggplot(aes(x = reorder(crime,count), y = count)) +
  geom_bar(stat = "identity", fill = "red") +
  labs(x ="Crimes", y = "Number of crimes", title = "Crimes in Chicago") + 
  scale_y_continuous(label = comma) +
  coord_flip()

Prevalence of different crimes seem to be an evenly distributed in Chicago with theft and battery being much more frequent. It would be interesting to look at how crimes are distributed with respect to time of day, day of week, and month.

#Time of day
crime_clean %>%
  ggplot(aes(x = time_group)) +
  geom_bar(fill = "red") +
  labs(x = "Time of day", y= "Number of crimes", title = "Crimes by time of day")

#Day of week
crime_clean %>%
  ggplot(aes(x = day)) +
  geom_bar(fill = "blue") +
  labs(x = "Day of week", y = "Number of crimes", title = "Crimes by day of week")

#Month
crime_clean %>%
  ggplot(aes(x = month)) +
  geom_bar(fill = "green") +
  labs(x = "Month", y = "Number of crimes", title = "Crimes by month")

There does seem to be a pattern in the occurrence of crime with respect to the dimension of time. The latter part of the day, Fridays, and summer months witness more crime incidents, on average, with respect to other corresponding time periods.

These plots show the combined distribution of all crime with respect to different intervals of time. We can demonstrate the same plots with additional information by splitting out the different crime types. For example, we can see how different crimes vary by different times of the day. To get the number of different crimes by time of day, we need to aggregate the data at a crime – time group level. That is, four rows for each crime type – one for each time interval of the day. An easy way to aggregate data is to use the summarize function.

library(viridis)
## Warning: package 'viridis' was built under R version 3.6.3
## Loading required package: viridisLite
## 
## Attaching package: 'viridis'
## The following object is masked from 'package:scales':
## 
##     viridis_pal
library(scales)

crime_clean %>%
  group_by(crime, time_group) %>%
  summarise(count = n()) %>%
  ggplot(aes(x = crime, y = time_group)) +
  geom_tile(aes(fill = count)) +
  labs(x = "Crime", y = "Time of day", title = "Theft Occurance Throughtout the Day") +
  scale_fill_viridis_c("Number of Crimes", label = comma) +
  coord_flip()
## `summarise()` has grouped output by 'crime'. You can override using the `.groups` argument.

A quick look at the heat map shows that most of the theft incidents occur in the afternoon whereas drug related crimes are more prevalent in the evening.

We can perform a similar analysis by day of week and month as well.

#Crimes by day of the week
crime_clean %>%
  group_by(crime,day) %>%
  summarise(count = n()) %>%
  ggplot(aes(x = crime, y = day)) +
  geom_tile(aes(fill = count)) +
  labs(x = "Crime", y = "Day of week", title = "Battery is more prevelant on Sundays") +
  scale_fill_viridis_c("Number of Crimes", label = comma) +
  coord_flip()
## `summarise()` has grouped output by 'crime'. You can override using the `.groups` argument.

#Crimes by month
crime_clean %>%
  group_by(crime,month) %>%
  summarise(count = n()) %>%
  ggplot(aes(x = crime, y = month)) +
  geom_tile(aes(fill = count)) +
  labs(x = "Crime", y = "Month of year", title = "Summer is popular for crimes") +
  scale_fill_viridis_c("Number of Crimes", label = comma) +
  coord_flip()
## `summarise()` has grouped output by 'crime'. You can override using the `.groups` argument.

Till now we have only looked at the temporal distribution of crimes. But there is also a spatial element attached to them. Crimes vary considerably with respect to geographies. Typically, within an area like a zip code, city, or county, there will be pockets or zones which observe higher criminal activity as compared to the others. These zones are labeled as crime hot-stops and are often the focus areas for effective predictive policing. We have the location of each crime incident in our data that can be used to look for these spatial patterns in the city of Chicago. For this purpose, we will utilize the shape files for Chicago Police Department’s beats by processing them in R using the maptools library. The shape files for CPD beats can be downloaded from https://data.cityofchicago.org/Public-Safety/BoundariesPolice-Beats/kd6k-pxkv.

# Police beat shape files
library(maptools)
## Warning: package 'maptools' was built under R version 3.6.3
## Loading required package: sp
## Warning: package 'sp' was built under R version 3.6.3
## Checking rgeos availability: FALSE
##      Note: when rgeos is not available, polygon geometry     computations in maptools depend on gpclib,
##      which has a restricted licence. It is disabled by default;
##      to enable gpclib, type gpclibPermit()
beat_shp<-readShapePoly('PoliceBeat.shp')
## Warning: readShapePoly is deprecated; use rgdal::readOGR or sf::st_read
plot(beat_shp)

If we plot the shape file, we get the city of Chicago cut up into beats. We can plot our crime incidences by mapping them to the coordinates of the shape files.

To add more value to our analysis, we can also plot the locations of the police stations in Chicago and see if there is any relation between hot-spots of crime and proximity of police stations. Shape files for CPD police stations can be downloaded from https://data.cityofchicago.org/Public-Safety/PoliceStations-Shapefiles/tc9m-x6u6.

station_shp <- rgdal::readOGR("C:/Users/Josh/Documents/R School Analyses/Intro to R/Assignment 4/police_stations.shp") # A more modern way to read in shapefiles
## OGR data source with driver: ESRI Shapefile 
## Source: "C:\Users\Josh\Documents\R School Analyses\Intro to R\Assignment 4\police_stations.shp", layer: "police_stations"
## with 26 features
## It has 6 fields

Unfortunately, we don’t have exact locations of the police stations in a ready format. They are embedded in the shape files and need to be extracted out. We have written a function to do just that. It takes a shape file as an input and returns the location (lat and long) of each police station in Chicago as the input.

# Get police station information
getPoliceData <- function(shp_file){
    PoliceData <- tibble()
    NumOfStations = nrow(shp_file@data)
        for(i in 1:NumOfStations){
            PoliceData[i, 1] <- shp_file@data$DESCRIPTIO[i]
            PoliceData[i, 2] <- shp_file@polygons[[i]]@labpt[1]
            PoliceData[i, 3] <- shp_file@polygons[[i]]@labpt[2]
        }
    names(PoliceData) <- c("description", "lat", "long")
    return(PoliceData)
}
police_data <- getPoliceData(station_shp)

Before we can plot the data on the map, we need to process it a bit further and get crime counts for each location. ddply() from the plyr library is a convenient function for this. ddply() takes a portion of a data frame, applies a function to that portion, and returns the result back in the form of a data frame. It works similar to the aggregate() function in the base package but is more flexible, versatile, and powerful.

# Aggregate data for plotting it on maps
(crime_agg <- group_by(crime_clean, crime, arrest, beat, date, x_coordinate,y_coordinate, time_group, day, month) %>%
  summarise(count = n())) %>%
  arrange(desc(count))
## `summarise()` has grouped output by 'crime', 'arrest', 'beat', 'date', 'x_coordinate', 'y_coordinate', 'time_group', 'day'. You can override using the `.groups` argument.
## # A tibble: 197,897 x 10
## # Groups:   crime, arrest, beat, date, x_coordinate, y_coordinate, time_group,
## #   day [197,897]
##    crime      arrest beat  date       x_coordinate y_coordinate time_group day  
##    <fct>      <fct>  <fct> <date>            <dbl>        <dbl> <fct>      <ord>
##  1 DRUG       Y      1121  2020-07-10      1153365      1905122 06-12      Fri  
##  2 BURGLARY   N      1834  2020-08-10      1177342      1903838 00-06      Mon  
##  3 NONVIOLENT N      225   2020-05-31      1175887      1869033 12-18      Sun  
##  4 BURGLARY   N      1912  2020-10-28      1163556      1930110 12-18      Wed  
##  5 DRUG       Y      1654  2020-07-26           NA           NA 06-12      Sun  
##  6 BURGLARY   N      111   2020-08-10      1176352      1900918 00-06      Mon  
##  7 DRUG       Y      1134  2020-07-21      1154228      1895173 06-12      Tue  
##  8 THEFT      N      112   2021-02-16      1176641      1900827 06-12      Tue  
##  9 THEFT      N      111   2020-07-20      1176352      1900927 12-18      Mon  
## 10 BURGLARY   N      1834  2020-08-10      1176796      1903917 00-06      Mon  
## # ... with 197,887 more rows, and 2 more variables: month <ord>, count <int>

We are going to utilize ggplot2’s extensive plotting capabilities for this exercise as well. To plot the shape file using ggplot(), we need to convert the data in the shape file into a data frame using the fortify.SpatialPolygons() function. The function fortify.SpatialPolygons() has been written by Hadley Wickham and is available on his GitHub page https://github.com/hadley/ggplot2/blob/master/R/fortify-spatial.r.

library(bigreadr)
## Warning: package 'bigreadr' was built under R version 3.6.3
#source("https://raw.githubusercontent.com/tidyverse/ggplot2/master/R/fortify-spatial.r")
fortify.SpatialPolygons <- function(model, data, ...) {
  rbind_df(lapply(model@polygons, fortify)) #had to fix line in Hadley's source code. rbind_dfs was replaced with rbind_df
}
beat_shp_df<-fortify.SpatialPolygons(beat_shp)
(crime_plot <- ggplot(beat_shp_df, aes(x=long, y=lat)) +
  geom_path(aes(group = group),col="#969696") + 
  theme_bw() +
  geom_point(data= police_data, aes(x= lat, y= long),col="#de2d26",shape=15, size=2))

To see how the crimes in Chicago are spread out spatially on a given day, we take the first date in our data set and the subset data for observations relating to this date only. In addition, to plot the crime incidents on the map, we convert our coordinates from factor to numeric.

# the cool ggplot way
# crimes for one day
today <- crime_agg %>%
  ungroup() %>%
  select(date) %>%
    filter(row_number()==1)

(crime_plot <- crime_plot + 
    geom_point(data=filter(crime_agg, as.character(date) == today), 
        aes(x=x_coordinate, y= y_coordinate, color=crime),alpha=0.15) +
  theme_bw() +
  ggtitle(str_c("Crime in Chicago on", 
                wday(today$date,label=TRUE,abbr=FALSE), ",",
                month(today$date, label=TRUE, abbr=FALSE), 
                day(today$date), year(today$date))) +
  theme(panel.grid.major = element_blank(), 
        panel.grid.minor = element_blank(),
        panel.border = element_blank(), 
        axis.title.x = element_blank(), 
        axis.title.y = element_blank(), 
        axis.text.x = element_blank(), 
        axis.text.y = element_blank(), 
        axis.ticks = element_blank()))

Modeling

Before we get to our model, we need to process the data a bit more. Specifically, we need to determine at what level of data are we going to build the model and what kind of independent variables can we derive from the existing data set.

The data we have are at a crime incident level, that is, for each recorded each crime incident in the city of Chicago that occurred in the past 12 months, we have the location, date, type, beat, and ward. The location is available at a very granular level with the exact geographical coordinates present alongside the larger territorial identity of police beats. Such information is vital, but it needs to be understood that not all information can be directly transformed into an implementable solution. We cannot predict exactly when and where the next crime is going to happen. Data scientists don’t make prophecies. They derive actionable insights in the form of statistical aggregates. Therefore, understanding the nature of the problem is critical for designing a workable solution within a given set of constraints.

Keeping the ultimate goal of predictive policing in mind, our modeling engine would need to be constructed at a reasonably sized predefined geographical area for reasonably long predefined time interval. For example, the geographical area can be a block, or a couple of blocks taken together, a zip code, a beat etc. Similarly, the time interval can be an hour or a couple hours or a day.

For our purpose, we will build a multivariate regression model with a negative binomial distribution for errors at a beat-day level for all the crimes taken together. There are many approaches that can be taken to develop crime prediction models. We chose a negative binomial model because of its simplicity, general acceptance and understanding, and ease of implementation. It is debatable whether building the model in this fashion is the right approach or not. We agree to the fact that in terms of accuracy, a better solution would be to deal with different crime types separately and generate predictions for smaller time periods. However, this is just an indicative exercise which has been broken down for understanding and at times, brevity. Following these lines, we try to explain how a solution can be designed through a well suited approach without worrying too much about the exact details and metrics.

To create the modeling data set, we first create our base data set which has all possible unique combinations of beats and dates. The number of rows for the base data will be the product of the total number of unique beats and total number of unique dates.

library(lubridate)

crime_agg %>%
  ungroup() %>%
  summarize(count_beats = n_distinct(beat),
            count_date = n_distinct(date))
## # A tibble: 1 x 2
##   count_beats count_date
##         <int>      <int>
## 1         274        365
#Unqiue beats from crime data
beats <- crime_agg %>%
    ungroup() %>%
    distinct(beat) %>%
    arrange(beat)

#Unqiue dates from crime data
dates <- crime_agg %>%
    ungroup() %>%
    distinct(date) %>%
    arrange(date)

The function expand_grid() will help create the desired data frame with the unique combination of beat and date. For convenience, we can sort/order the data frame by beats

#Create base data
temp <- expand_grid(beats, dates) %>%
   arrange(beat) 

The total number of crimes in a beat on a given day can be found by aggregating the data by beats and dates.

#Aggregate crime data to get one row for beat-date combination
model_data <- crime_agg %>%
  ungroup() %>%
  group_by(beat,date) %>%
  summarize(count = sum(count, na.rm = TRUE),
            arrest = sum(as.numeric(arrest)-1, na.rm = TRUE))
## `summarise()` has grouped output by 'beat'. You can override using the `.groups` argument.

We then overlap the aggregated crimes data with the temp data set we created to get our final modeling data set

# Overlap base data and crime_agg data
model_data <- temp %>%
   left_join(model_data, keep = TRUE)
## Joining, by = c("beat", "date")

Our modeling data set has all the crime incidents that were recorded in the past 12 months. However, during this period, there were beats in which no crime occurred (or was not recorded) on certain days. For these rows, we see NAs in the count and arrest fields. We can replace the NAs with zero to indicate that there were no crimes, and therefore no arrests, in these beats on these days.

model_data <- model_data %>%
  mutate(arrest = replace_na(arrest, 0),
         count = replace_na(count, 0))

We saw in the visualization exercise that there was variation in the crime incidents with respect to days of the week and month, suggesting that they can be used as predictor variables in the model. These variables can be created using the wday() and month() functions, respectively

#Get day of the week from date 
model_data <- model_data %>%
  mutate(day = wday(date.y, abbr = TRUE, label = TRUE), 
         month = month(date.y, abbr = TRUE, label = TRUE),
         day = as_factor(day),
         month = as_factor(month)) 

A potential important indicator of criminal activity in a particular area could be the history of criminal activities in the past. We can calculate the crime history of each beat for different time periods. To calculate the crime histories, we will use the group averages function roll_sum from the RcppRoll library. The n arguement will help us look back in time for any number of days by supplying only one argument.

To calculate the number of crimes in the past seven days for each beat, we pass our data into mutate to create a past_crime1 variable, ensuring that our data is arranged by beat and date and grouping it by date. The roll_sum function takes the sum of the number of rows going back equal to the arguement supplied in n.

library(RcppRoll)
## Warning: package 'RcppRoll' was built under R version 3.6.3
#Get crime history for each beat
model_data <- model_data %>%
   ungroup() %>%
   arrange(beat.y,date.y) %>%
   group_by(beat.y) %>%
   mutate(past_crime1 = lag(count), past_crime7 = roll_sum(count, n = 7, align = 'right', fill = NA)) 

We can calculate the crimes for the past 30 days as well.

model_data <- model_data %>%
   mutate(past_crime30 = roll_sum(count, n = 30, align = 'right', fill = NA))

If we look at the data, we can see that the past crime information will not be available for certain dates. For example, if the first observation in our data is from May 29, 2019. This implies that the first observation for the past_crime30 variable can only be calculated from June 21, 2011 onwards. Since we have 0 beats in our data, we will have missing values for 7975 rows, which is about 0 % of our total observations. Simply removing these rows can lead to loss of valuable information. To circumvent this barrier, we need to impute for these missing observations with logical estimates from the data. One way to approach this is by taking the mean for each of these variables and replace the missing cells with this value.

#Replace missing values
model_data <- model_data %>% 
   mutate(
         past_crime1 = if_else(is.na(past_crime1), mean(past_crime1,na.rm = TRUE), past_crime1),
         past_crime7 = if_else(is.na(past_crime7), mean(past_crime7,na.rm = TRUE), past_crime7),
         past_crime30 = if_else(is.na(past_crime30), mean(past_crime30,na.rm = TRUE), past_crime30)
         )

We are not done with past crimes as yet. There is more valuable information that we can extract from these and, typically, such will be the case in most data mining exercises we do. With a few base variables, we can tweak, twist, and turn them to look at the response from different perspectives.

We have information on the number of arrests made in each beat on each day. We calculate similar past variables for arrests and see the effects of police actions in the past on crimes in the future. For example, we can calculate the number of arrests in the past 30 days for each beat.

#Arrests history
model_data <- model_data %>%
   mutate(
     past_arrest30 = roll_sum(arrest, n = 30, align = 'right', fill = NA), 
     past_arrest30 = if_else(is.na(past_arrest30), mean(past_arrest30, na.rm = TRUE), past_arrest30) 
          )

Simply using the past arrests variable will not bring out the effect we are looking for since it will be highly correlated with the past crimes variable (the correlation between past_crime30 and past_arrest30 is 1).

To bring out the real effect of policing, we can normalize past arrests by past crimes and see if more arrests per crime in the past have deterred criminals from committing crimes in the future

#The effect of policing
model_data <- model_data %>%
  mutate(policing = if_else(past_crime30 == 0, 0, past_arrest30 / past_crime30))

Another useful extension of past crimes variables can be the interaction between crimes in the past 7 days to crime in the past 30 days to see if crime has been increasing or decreasing in the recent past and what effect does this have on future crimes.

#The effect of crime trend
model_data <- model_data %>%
   mutate(crime_trend = if_else(past_crime30 == 0, 0, past_crime7 / past_crime30))

Our visualization exercise showed that there is considerable variation in crime incidents with respect to the time of the year. But we have only 1 year of data for both building the model and validating it. To use the month variable effectively, we can combine the similar months to form a new variable that reflects the changes in crime incidents with seasons.

#Season variable
model_data <- model_data %>%
   mutate(season = fct_recode(month,
                     "Spring" = "Mar",
                     "Spring" = "Apr",
                     "Spring" = "May",
                     "Summer" = "Jun",
                     "Summer" = "Jul",
                     "Summer" = "Aug",
                     "Fall" = "Sep",
                     "Fall" = "Oct",
                     "Fall" = "Nov",
                     "Winter" = "Dec",
                     "Winter" = "Jan",
                     "Winter" = "Feb"
                     ),
          season = as_factor(season)
          )

We have created a number of predictor variables, including interactions. The motivation behind deriving these was to get a set of variables that explains a good amount of variation in the dependent variable. One possible way to check this is the correlation between the dependent variable and the independent variables. The corrplot library has a convenient function that will allow us to do just that.

#Summary of modeling data set
model_data %>%
  ungroup() %>%
  select(count, past_crime1, past_crime7, past_crime30, policing, crime_trend, day, season)
## # A tibble: 100,010 x 8
##    count past_crime1 past_crime7 past_crime30 policing crime_trend day   season
##    <dbl>       <dbl>       <dbl>        <dbl>    <dbl>       <dbl> <ord> <ord> 
##  1     2        2.46        17.2         74.1    0.258       0.232 Mon   Spring
##  2     2        2           17.2         74.1    0.258       0.232 Tue   Spring
##  3     2        2           17.2         74.1    0.258       0.232 Wed   Spring
##  4     1        2           17.2         74.1    0.258       0.232 Thu   Spring
##  5     5        1           17.2         74.1    0.258       0.232 Fri   Spring
##  6     2        5           17.2         74.1    0.258       0.232 Sat   Spring
##  7     3        2           17           74.1    0.258       0.229 Tue   Spring
##  8     1        3           16           74.1    0.258       0.216 Wed   Spring
##  9     1        1           15           74.1    0.258       0.202 Thu   Spring
## 10     1        1           14           74.1    0.258       0.189 Fri   Spring
## # ... with 100,000 more rows
#Calculate correlation matrix
library(corrplot)
## Warning: package 'corrplot' was built under R version 3.6.3
## corrplot 0.84 loaded
md <- model_data %>% 
  ungroup() %>%
  select(count, past_crime1, past_crime7, past_crime30, policing, crime_trend) %>%
  cor()

#Correlation 
corrplot.mixed(md, order = "hclust", number.cex = 0.9)

Though data mining is a creative process, it does have some rules. One of the most stringent ones being that the performance of any predictive model is to be tested on a separate out-of-sample dataset. Analysts and scientists who are ignorant of this are bound to face the wrath of over-fitting leading to poor results when the model is deployed.

In our case, to measure the performance of our model, we will use an out-of-time validation sample. We will divide our data into two portions—a 90% development sample where we can train or develop our model and a 10% validation sample where we can test the performance of our model. We can do this with the createDataPartition() function in the caret library then splitting them into train and test using proportional numbers for observations required in each.

library(modelr)
## Warning: package 'modelr' was built under R version 3.6.3
(model_dat <- model_data %>% 
  ungroup() %>% 
  mutate(season_summer = if_else(season == 'Summer', 1, 0),
         season_winter = if_else(season == 'Winter', 1, 0),
         season_spring = if_else(season == 'Spring', 1, 0),
         season_fall = if_else(season == 'Fall', 1 ,0)) %>%
  arrange(date.y))
## # A tibble: 100,010 x 19
##    beat.x date.x     beat.y date.y     count arrest day   month past_crime1
##    <fct>  <date>     <fct>  <date>     <dbl>  <dbl> <ord> <ord>       <dbl>
##  1 1123   2020-04-06 1123   2020-04-06     2      0 Mon   Apr          2.46
##  2 334    2020-04-06 334    2020-04-06     2      0 Mon   Apr          2.64
##  3 822    2020-04-06 822    2020-04-06     2      0 Mon   Apr          2.32
##  4 2234   2020-04-06 2234   2020-04-06     1      0 Mon   Apr          2.61
##  5 1822   2020-04-06 1822   2020-04-06     1      0 Mon   Apr          1.91
##  6 622    2020-04-06 622    2020-04-06     2      0 Mon   Apr          2.17
##  7 614    2020-04-06 614    2020-04-06     1      0 Mon   Apr          2.59
##  8 431    2020-04-06 431    2020-04-06     2      0 Mon   Apr          2.82
##  9 723    2020-04-06 723    2020-04-06     3      2 Mon   Apr          2.60
## 10 533    2020-04-06 533    2020-04-06     1      0 Mon   Apr          2.97
## # ... with 100,000 more rows, and 10 more variables: past_crime7 <dbl>,
## #   past_crime30 <dbl>, past_arrest30 <dbl>, policing <dbl>, crime_trend <dbl>,
## #   season <ord>, season_summer <dbl>, season_winter <dbl>,
## #   season_spring <dbl>, season_fall <dbl>
preds_x <- model_matrix(model_dat,count ~ past_crime1 + past_crime7 + past_crime30 + policing + crime_trend + day + season_spring + season_summer + season_winter + season_fall + I(past_crime30^2) - 1)

ids_mod <- model_dat %>%
  select(beat.y, date.y, count) %>%
  rename(beat = beat.y) %>%
  rename(date = date.y)

ids_mod = ids_mod[1:80306,]

(modeling_data <- bind_cols(ids_mod, preds_x) %>% 
    arrange(date) %>%
    rename(past_crime_sq = `I(past_crime30^2)`)
)
## # A tibble: 80,306 x 20
##    beat  date       count past_crime1 past_crime7 past_crime30 policing
##    <fct> <date>     <dbl>       <dbl>       <dbl>        <dbl>    <dbl>
##  1 1123  2020-04-06     2        2.46        17.2         74.1   0.258 
##  2 334   2020-04-06     2        2.64        18.5         80.3   0.0794
##  3 822   2020-04-06     2        2.32        16.3         70.7   0.150 
##  4 2234  2020-04-06     1        2.61        18.4         79.8   0.132 
##  5 1822  2020-04-06     1        1.91        13.4         58.9   0.112 
##  6 622   2020-04-06     2        2.17        15.3         66.0   0.171 
##  7 614   2020-04-06     1        2.59        18.2         78.3   0.145 
##  8 431   2020-04-06     2        2.82        19.8         85.7   0.117 
##  9 723   2020-04-06     3        2.60        18.2         78.7   0.208 
## 10 533   2020-04-06     1        2.97        20.8         90.1   0.117 
## # ... with 80,296 more rows, and 13 more variables: crime_trend <dbl>,
## #   daySun <dbl>, dayMon <dbl>, dayTue <dbl>, dayWed <dbl>, dayThu <dbl>,
## #   dayFri <dbl>, daySat <dbl>, season_spring <dbl>, season_summer <dbl>,
## #   season_winter <dbl>, season_fall <dbl>, past_crime_sq <dbl>
inTrain <- c(1:floor(nrow(modeling_data) * 0.90))
training <- modeling_data[inTrain,]
test <- modeling_data[-inTrain,]

The dependent variable here, count, is a count variable. It is a discrete variable that counts the number of crimes instances in a particular beat on a given day. Typically, for modeling counts, a poisson regression model is a preferred choice that seems to fit the data well. However, the poisson regression model comes with the strong assumption that the mean of the dependent variable is equal to its variance. In our case, this assumption does not hold.

mean(training$count)
## [1] 2.502525
var(training$count)
## [1] 2.949917

The variance is much greater than the mean indicating that the distribution is overdispersed. A suitable way to model for such overdispersion is using the negative binomial distribution. We will use the glm.nb() method with the train function from the caret package to build the model.

As a basic model, we will include all linear variables and interactive effects we created in the previous section.

library(caret)
## Warning: package 'caret' was built under R version 3.6.3
## Loading required package: lattice
## 
## Attaching package: 'caret'
## The following object is masked from 'package:purrr':
## 
##     lift
library(MASS)
## 
## Attaching package: 'MASS'
## The following object is masked from 'package:dplyr':
## 
##     select
#Training control
train_control <- trainControl(method = "repeatedcv", number = 10, repeats = 3)

#Negative binomial regression model
crime_nb <- train(count ~ .-beat-date-season_summer-dayFri-past_crime_sq, data = training, trControl = train_control, method = 'glm.nb', tuneLength = 5)
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## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached
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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

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## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
summary(crime_nb$finalModel) 
## 
## Call:
## NULL
## 
## Deviance Residuals: 
##     Min       1Q   Median       3Q      Max  
## -5.3643  -0.6209  -0.1336   0.4341  11.1763  
## 
## Coefficients:
##                Estimate Std. Error z value Pr(>|z|)    
## (Intercept)   -0.102559   0.102816  -0.997  0.31852    
## past_crime1   -0.133935   0.004333 -30.911  < 2e-16 ***
## past_crime7    0.153802   0.005920  25.981  < 2e-16 ***
## past_crime30   0.001569   0.001331   1.179  0.23836    
## policing      -0.058339   0.076169  -0.766  0.44373    
## crime_trend    0.667486   0.445289   1.499  0.13387    
## daySun         0.024092   0.021023   1.146  0.25181    
## dayMon        -0.029220   0.020714  -1.411  0.15835    
## dayTue        -0.101248   0.020515  -4.935 8.01e-07 ***
## dayWed        -0.067677   0.020656  -3.276  0.00105 ** 
## dayThu        -0.080729   0.020615  -3.916 9.00e-05 ***
## daySat        -0.022067   0.020881  -1.057  0.29060    
## season_spring  0.049599   0.017270   2.872  0.00408 ** 
## season_winter  0.016328   0.015097   1.082  0.27946    
## season_fall    0.003286   0.014941   0.220  0.82594    
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## (Dispersion parameter for Negative Binomial(49407.32) family taken to be 1)
## 
##     Null deviance: 67988  on 72274  degrees of freedom
## Residual deviance: 44895  on 72260  degrees of freedom
## AIC: 237335
## 
## Number of Fisher Scoring iterations: 1
## 
## 
##               Theta:  49407 
##           Std. Err.:  33950 
## Warning while fitting theta: iteration limit reached 
## 
##  2 x log-likelihood:  -237303.3

Most of the variables are significant at the 0.1% level except crimes in the past 7 days given by past.crime.7 and the winter season. This shows that the visualization exercise was fruitful and our insights based on those did represent the structure present in the data. The significance of variables, however, is not a deciding factor for the model being good or bad. For that, we need to go a step further.

Model Evaluation

One widely used industry practice to decide whether a model is good or bad is to check its performance on an out-of-sample or out-of-time data set. Before starting the modeling exercise, we kept a portion of data for this purpose. We can check the performance on the outof-sample data set by scoring it using the predict() function and comparing it to the actual values by using the root mean squared error (RMSE).

#Predict on test data
pred_nb <- predict(crime_nb$finalModel, test)

#RMSE
sqrt(mean((test$count - pred_nb)^2))
## [1] 1.186027

The RMSE is a popular industry metric that gives us a value of how far we are on average from the actual values. We establish a benchmark with the first iteration of the model. This benchmark then initiates an iterative process of tweaking the model constituents, adding or deleting variables, transforming them till we get some improvement. As an example, consider the scenario where we believe that crimes in the future increase as crimes in the past increase, but at a decreasing rate, that is, the relationship between then is concave. In such a situation including another variable which is a higher-order term for past_crime30 might help reduce the RMSE.

#Negative binomial regression model with past_crime_sq
crime_nb2 <- train(count ~ .-beat-date-season_summer-dayFri, data = training, trControl=train_control, method = 'glm.nb')
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## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
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## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached
## Warning in (function (formula, data, weights, subset, na.action, start = NULL, :
## alternation limit reached
## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

## Warning in theta.ml(Y, mu, sum(w), w, limit = control$maxit, trace =
## control$trace > : iteration limit reached

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summary(crime_nb2$finalModel)
## 
## Call:
## NULL
## 
## Deviance Residuals: 
##     Min       1Q   Median       3Q      Max  
## -5.3752  -0.6210  -0.1339   0.4341  11.1549  
## 
## Coefficients:
##                 Estimate Std. Error z value Pr(>|z|)    
## (Intercept)   -8.495e-02  1.174e-01  -0.724  0.46919    
## past_crime1   -1.339e-01  4.333e-03 -30.910  < 2e-16 ***
## past_crime7    1.539e-01  5.933e-03  25.939  < 2e-16 ***
## past_crime30   1.140e-03  1.913e-03   0.596  0.55113    
## policing      -5.979e-02  7.633e-02  -0.783  0.43349    
## crime_trend    6.594e-01  4.464e-01   1.477  0.13959    
## daySun         2.412e-02  2.102e-02   1.147  0.25133    
## dayMon        -2.923e-02  2.071e-02  -1.411  0.15827    
## dayTue        -1.013e-01  2.052e-02  -4.937 7.94e-07 ***
## dayWed        -6.769e-02  2.066e-02  -3.277  0.00105 ** 
## dayThu        -8.075e-02  2.062e-02  -3.917 8.97e-05 ***
## daySat        -2.206e-02  2.088e-02  -1.056  0.29080    
## season_spring  4.978e-02  1.728e-02   2.881  0.00397 ** 
## season_winter  1.631e-02  1.510e-02   1.081  0.27990    
## season_fall    3.413e-03  1.495e-02   0.228  0.81936    
## past_crime_sq  2.416e-06  7.715e-06   0.313  0.75416    
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## (Dispersion parameter for Negative Binomial(49401.77) family taken to be 1)
## 
##     Null deviance: 67988  on 72274  degrees of freedom
## Residual deviance: 44895  on 72259  degrees of freedom
## AIC: 237337
## 
## Number of Fisher Scoring iterations: 1
## 
## 
##               Theta:  49402 
##           Std. Err.:  33944 
## Warning while fitting theta: iteration limit reached 
## 
##  2 x log-likelihood:  -237303.2
#Predict on test data
pred_nb2 <- predict(crime_nb2$finalModel, test)

#RMSE
sqrt(mean((test$count - pred_nb2)^2))
## [1] 1.186037

Inclusion of an additional important variable increased the RMSE from 1.1860267 to 1.1860375 - an indication that we are headed in the wrong direction.

Typically, with limited amount of data and time one can only improve so much on a given model. The key is then to decide the optimal point where the trade-off between accuracy and effort is minimized.

RMSE is just one of the many metrics that can be employed to determine the predictive power of a model. Another common method used is the actual versus predicted plot that gives a visual representation of how far away our predictions are from the actual values.

Directly comparing the actual and predicted values may not yield any insights considering there are about 10,000 data points within a small range. To make the comparison visually convenient and conclusive, we can bin the predictions and the actuals into groups and compare the average values for corresponding groups. For example, we can create 10 groups of the predicted values and take the average of the predicted and actual values in each group. The idea is that if the predictions were reasonably accurate, we would get reasonably overlapping lines. This gives us a comprehensive and condensed view of the differences between our predictions and the actual crimes.

For the plot, we first bring the actual and the predicted values into one data frame and thenuse the cut() function to create 10 groups of the predicted values and calculate the average values of the predicted and actual crimes by applying the mean() function to each group.

#Actual vs predicted 
validate <- test %>%
  add_predictions(crime_nb) %>%
  mutate(pred = round(pred)) %>%
    ggplot(aes(pred,count)) +
      geom_hex() + 
      geom_abline(color = "blue")

Try some other models

Let’s now try 6 different models. Some models require tuning parameters, so we tell caret to try 5 different combinations of tuning parameters for each model that requires tuning parameters. For linear regression models, there are no tuning parameters.

library(caret)
library(glmnet)
## Warning: package 'glmnet' was built under R version 3.6.3
## Loading required package: Matrix
## 
## Attaching package: 'Matrix'
## The following objects are masked from 'package:tidyr':
## 
##     expand, pack, unpack
## Loaded glmnet 4.1-1
library(earth)
## Warning: package 'earth' was built under R version 3.6.3
## Loading required package: Formula
## Warning: package 'Formula' was built under R version 3.6.3
## Loading required package: plotmo
## Warning: package 'plotmo' was built under R version 3.6.3
## Loading required package: plotrix
## Warning: package 'plotrix' was built under R version 3.6.3
## 
## Attaching package: 'plotrix'
## The following object is masked from 'package:scales':
## 
##     rescale
## Loading required package: TeachingDemos
## Warning: package 'TeachingDemos' was built under R version 3.6.3
#Glmnet model
crime_glmnet <- train(count ~ .-beat-date-season_summer-dayFri-past_crime_sq, data = training, trControl = train_control, method = 'glmnet', family = 'gaussian', tuneLength = 5)

#Poisson 
crime_pois <- train(count ~ .-beat-date-season_summer-dayFri-past_crime_sq, data = training, trControl = train_control, method = 'glmnet', family = 'poisson', tuneLength = 5)

#Earth
crime_earth <- train(count ~ .-beat-date-season_summer-dayFri-past_crime_sq, data = training, trControl = train_control, method = 'earth',tuneLength = 5)

#Earth poisson
crime_earth_pois <- train(count ~ .-beat-date-season_summer-dayFri-past_crime_sq, data = training, trControl = train_control, method = 'earth', glm = list(family = poisson), tuneLength = 5)

#GAM
crime_gam <- train(count ~ .-beat-date-season_summer-dayFri-past_crime_sq, data = training, trControl=train_control, method = 'gam', tuneLength = 5)
## Loading required package: mgcv
## Loading required package: nlme
## 
## Attaching package: 'nlme'
## The following object is masked from 'package:dplyr':
## 
##     collapse
## This is mgcv 1.8-28. For overview type 'help("mgcv-package")'.
#rpart
crime_tree <- train(count ~ .-beat-date-season_summer-dayFri-past_crime_sq, data = training, trControl=train_control, method = 'rpart', tuneLength = 5)
## Warning in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, :
## There were missing values in resampled performance measures.
resamps <- resamples(list(glmnet = crime_glmnet,
                          poisson = crime_pois,
                          neg_bin = crime_nb,
                          earth = crime_earth,
                          earth.pois = crime_earth_pois,
                          gam = crime_gam,
                          rpart = crime_tree))
ss <- summary(resamps)
ss[[3]]$Rsquared
##                 Min.   1st Qu.    Median      Mean   3rd Qu.      Max. NA's
## glmnet     0.2701635 0.2861178 0.2972489 0.2970628 0.3081267 0.3265371    0
## poisson    0.2713401 0.2807412 0.2896039 0.2892988 0.2992475 0.3159243    0
## neg_bin    0.2625711 0.2876532 0.2940014 0.2972657 0.3083126 0.3228838    0
## earth      0.2318415 0.2774792 0.2896968 0.2842888 0.2961015 0.3076906    0
## earth.pois 0.1792763 0.2794960 0.2970420 0.2868643 0.3040367 0.3301902    0
## gam        0.1450567 0.2410304 0.2762415 0.2638945 0.2994640 0.3094836    0
## rpart      0.2174211 0.2440675 0.2599930 0.2605761 0.2659556 0.3138248    0
library(lattice)

trellis.par.set(caretTheme())
dotplot(resamps, metric = "Rsquared")