Version 5 NRCS graphs
James Lin
4/10/2021
Change up labels
1 Set up
1.1 1) Load packages
1.2 2) Import data
1.3 3) Data Wrangling
1.4 4) Theme James
2 Extra
2.1 Kansas Map
## Warning in f(...): True north is not meaningful without coord_sf()
2.2 Correlation Matrix
## [1] "sample_name" "location" "treatment"
## [4] "depth" "replication" "bdepth"
## [7] "nhorizon" "blk" "horizon"
## [10] "thorizon" "rlanduse" "landuse"
## [13] "elevation" "clay" "temp"
## [16] "precip" "prec" "ag"
## [19] "tillage" "nh4" "no3"
## [22] "t_np" "t_nm" "to_cp"
## [25] "to_cg" "ca" "cu"
## [28] "mg" "mn" "na"
## [31] "p" "p_h" "carbonate"
## [34] "k" "zn" "fe"
## [37] "gwc" "odad" "bd"
## [40] "ac" "x20wsa2000" "x20wsa250"
## [43] "x20wsa53" "x20wsa20" "x20mwd"
## [46] "x5wsa2000" "x5wsa250" "x5wsa53"
## [49] "x5wsa20" "x5mwd" "nagg"
## [52] "respiration" "mb" "gramp"
## [55] "gramn" "actin" "amf"
## [58] "fungi" "fb" "glucosidase"
## [61] "glucosaminidase" "acidphosphotase" "alkphosphatase"
## [64] "arylsulfatase" "phosphodiesterase" "protein"
2.3 Corrplot matrix
## png
## 23 Biological Graphs
3.1 B-Glucosidase
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
3.2 B-Glucosaminidase
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
3.3 Acid Phosphatase
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
3.4 Alkaline Phosphatase
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
3.5 Arylsulfatase
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
3.6 Phosphodiesterase
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
3.7 Protein Content
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
3.8 Permanganate Oxidizable Organic Carbon
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
3.9 Soil Respiration
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4 Chemical Graphs
4.1 NH4+
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4.2 NO3-
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4.3 Total Nitrogen
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4.4 Total Organic Carbon
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4.5 Extractable Ca Content (g/kg)
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4.6 Extractable Cu Content (mg/kg)
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4.7 Extractable Mg Content (mg/kg)
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4.8 Extractable Mn Content (mg/kg)
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4.9 Extractable Na Content (mg/kg)
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4.10 Extractable P Content (mg/kg)
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4.11 Extractable K Content (mg/kg)
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4.12 Extractable Zn Content (mg/kg)
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4.13 Extractable Fe Content (mg/kg)
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4.14 pH
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
4.15 Water Moisture
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
5 Physical graphs
5.1 Clay
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
5.2 20 minute MWD
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se5.3 5 minute MWD
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se## Warning: Removed 56 row(s) containing missing values (geom_path).## Warning: Removed 120 rows containing missing values (geom_point).
## Warning: Removed 120 rows containing missing values (geom_point).## Warning: Removed 56 row(s) containing missing values (geom_path).## Warning: Removed 120 rows containing missing values (geom_point).
## Warning: Removed 120 rows containing missing values (geom_point).
5.4 NRCS hand method
## Warning: Ignoring unknown parameters: se## Warning: Removed 28 row(s) containing missing values (geom_path).## Warning: Removed 28 rows containing missing values (geom_point).
## Warning: Removed 28 rows containing missing values (geom_point).
## Warning: Ignoring unknown parameters: se## Warning: Removed 28 row(s) containing missing values (geom_path).## Warning: Removed 28 rows containing missing values (geom_point).
## Warning: Removed 28 rows containing missing values (geom_point).## Warning: Removed 28 row(s) containing missing values (geom_path).## Warning: Removed 28 rows containing missing values (geom_point).
## Warning: Removed 28 rows containing missing values (geom_point).
5.5 Bulk Density
## Warning: Ignoring unknown parameters: se## Warning: Removed 28 row(s) containing missing values (geom_path).## Warning: Removed 28 rows containing missing values (geom_point).
## Warning: Removed 28 rows containing missing values (geom_point).
## Warning: Ignoring unknown parameters: se## Warning: Removed 28 row(s) containing missing values (geom_path).## Warning: Removed 28 rows containing missing values (geom_point).
## Warning: Removed 28 rows containing missing values (geom_point).## Warning: Removed 28 row(s) containing missing values (geom_path).## Warning: Removed 28 rows containing missing values (geom_point).
## Warning: Removed 28 rows containing missing values (geom_point).
6 Ratio Graphs
6.1 Total Organic Carbon to Nitrogen
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
6.2 Protein to Total Nitrogen
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
6.3 Soil Respiration to Total Organic Carbon
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
6.4 Glucosidase to Glucosaminidase ratio
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
6.5 Glucosidase to Acid Phosphotase ratio
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
6.6 Glucosidase to Alkaline Phosphatase ratio
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
6.7 Glucosidase to Arylsulfatase ratio
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
6.8 Glucosidase to Phosphodiesterase ratio
## Warning: Ignoring unknown parameters: se
## Warning: Ignoring unknown parameters: se
Joined Graph
grid.arrange(spp_weight_boxplot, spp_count_plot, ncol = 2, widths = c(4, 6))
ggsave(“fiv.png”, fiv, width = 15, height = 10)