Schefferville - transitions; Basic statistics for supplementary material

Tammy L. Elliott

Date: April 12, 2015

R version 3.1.0

# set global chunk options: 
library(knitr)
opts_chunk$set(cache=FALSE, fig.align='center')

rm(list = ls()) #Clear your work environment

Frequency of species across 176 plots

abd.sp.allsp.pa<-abd.sp.allsp
abd.sp.allsp.pa[abd.sp.allsp.pa > 0] <- 1 
(colSums(abd.sp.allsp.pa))

## AchMil AgrMer AlnVir AmeBar AndPol AnePar AntAlp AntMon ArcAlp ArnAng 
##      7      2     10      1      6     12      1      1     12      1 
## BarAlp BetGla BisViv CalCan CarAqu CarBig CarBru CarCap CarCat CarDef 
##      7     70     17     10      7     16      2      7      1      2 
## CarDis CarGyn CarLep CarLim CarMag CarSci CarTri CarUtr CarVag CasSep 
##      3     31      1      6      2     32      2      1     68      2 
## CerAlp ChaAng CopTri CorCan CysMon DasFru AveFle DiaLap DipCom DryExp 
##      1      2     40     83      4      1     25      2      3      2 
## DryInt ElyTra EmpNig EpiHor EquArv EquSci EquSyl EquVar EriVir EurRad 
##     12      5     64      1     19      4     36      5      2     12 
## FraVir GauHis GeoLiv HupApr JunCom JunTri KalPol LinBor LisCor LonVil 
##      2     23     49      3      8      3     13     76      7      5 
## LuzPar LycAno MaiTri MinBif MitNud MoeMac MonUni MyrGal OrtSec PacAur 
##      2     42      7      1     40      0      1      3     23      1 
## ParKot PetFri PhyCae PoaArc PyrAsa PyrGra RhiMin RhoGro RhoLap RibGla 
##      0     17      0      1      3      3      2     91      7      8 
## RubArc RubCha RubIda SalArc SalArg SalGla SalHum SalPed SalPla SalUva 
##     27     19      6     13      1      8      1      1      8      5 
## SalVes SchPur SelSel SolMac SolMul SteBor SteLon TofPus TriAlp TriBor 
##     55      2      1     39     18      2      0     14      1     36 
## TriCes TriSpi VacCes VacMyr VacOxy VacUli VacVit VibEdu VioAdu VioRen 
##     16      1     34     31     18     79    107      4     21     17 
## AbiBal LarLar PicGla PicMar AreHum BetMin BetPum CarBel CarGla CopLap 
##      5     14     40     62      0      0      0      0      0      0 
## CorTri LuzSpi PoaAlp SalHer SalMyr 
##      0      0      0      0      0