Title

Helpers (Run and Delete)

Here are some helper functions that you can use to flesh out your document. Run these once in your session then knit as normal. Delete this entire section when you are finished.

Code	Result
RocheTemplates::build_navbar()	Creates a helpful navigation bar if you are on BEE
RocheTemplates::build_bib()	Writes a bibliography.bib file to the working directory with some common .tex citations. Make sure to uncomment bibliography: bibliography.bib in your YAML to access the file

1 Status: DEVELOPMENT

This document is currently under development and may contain both minor and major errors – Do NOT make any major decisions on the basis of the following results without first consulting the main author(s) to discuss potential errors and limitations.

2 Scratch Pad

This section is solely for the developer to jot down notes.

3 Links and Glossary

3.1 Links

Title	Link
SAP	www.google.com
GitHub	www.google.com
JIRA	www.google.com
gDrive	www.google.com
Other (e.g.; Confluence)	www.google.com

3.2 Glossary

Term	Description
XXX	XXX
YYY	YYY
ZZZ	ZZZ

4 Objectives

The objectives for this study were as follows:

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5 Data

# Load packages --------------------------------------

library(tidyverse)
library(RWDSverse)

# DB Connections -------------------------------------


# Data Loading ---------------------------------------


# Cleaning and Wrangling -----------------------------


# Analyses -------------------------------------------

5.1 Data Sources

Data come from…

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5.2 Cohort Definition(s)

The study cohort was defined as follows…

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6 Primary Analyses

6.1 P1

# CODE

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6.2 P2

# CODE

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6.3 P3

# CODE

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7 Secondary Analyses

7.1 S1

# CODE

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7.2 S2

# CODE

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7.3 S3

# CODE

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8 Addendum

The following tables describe the author’s R environment at the time this document was created

8.1 Environment

RocheTemplates::show_environment(what = 'environment')

Platform information

Variable	Value
Kernal	Linux
OS version
version	R version 3.6.3 (2020-02-29)
os	Red Hat Enterprise Linux
system	x86_64, linux-gnu
ui	X11
language	(EN)
collate	en_US.UTF-8
ctype	en_US.UTF-8
tz	Europe/Zurich
date	2020-11-23

8.2 Packages

RocheTemplates::show_environment(what = 'packages')

Packages used

package	loadedversion
assertthat	0.2.1
backports	1.1.6
base64enc	0.1-3
broom	0.5.6
callr	3.4.3
cellranger	1.1.0
cli	2.1.0
colorspace	1.4-1
crayon	1.3.4
DBI	1.1.0
dbplyr	1.4.3
desc	1.2.0
devtools	2.3.0
digest	0.6.27
dplyr	1.0.2
ellipsis	0.3.1
evaluate	0.14
fansi	0.4.1
forcats	0.5.0
fs	1.4.1
generics	0.1.0
ggplot2	3.3.0
glue	1.4.2
gtable	0.3.0
haven	2.3.1
highr	0.8
hms	0.5.3
htmltools	0.5.0
httr	1.4.2
jsonlite	1.7.1
knitr	1.28
lattice	0.20-41
lifecycle	0.2.0
lubridate	1.7.8
magrittr	1.5
memoise	1.1.0
modelr	0.1.6
munsell	0.5.0
nlme	3.1-148
pillar	1.4.6
pkgbuild	1.0.7
pkgconfig	2.0.3
pkgload	1.0.2
prettyunits	1.1.1
processx	3.4.2
ps	1.3.2
purrr	0.3.4
R6	2.5.0
Rcpp	1.0.5
readr	1.4.0
readxl	1.3.1
remotes	2.1.1
reprex	0.3.0
rlang	0.4.8
rmarkdown	2.1
RocheTemplates	1.2.6
rprojroot	1.3-2
rstudioapi	0.11
rvest	0.3.5
RWDSverse	0.5.1
scales	1.1.0
sessioninfo	1.1.1
stringi	1.5.3
stringr	1.4.0
testthat	2.3.2
tibble	3.0.4
tidyr	1.1.2
tidyselect	1.1.0
tidyverse	1.3.0
usethis	1.6.0
vctrs	0.3.4
withr	2.3.0
xfun	0.13
xml2	1.3.2
yaml	2.2.1