library(ggplot2)
library(sf)
library(geobr)
library(ggspatial)
library(tidyverse)
layout(matrix(c(1,2,3,3), 2, 2, byrow = TRUE))
RS <- read_state(code_state = "RS", year = 2018, showProgress = F)
ggplot(RS) +
aes(group = code_state) +
geom_sf(size = 1L) +
labs(x = "Longitude", y = "Latitude", title = "Rio Grande do Sul") +
theme_bw()
BR <- read_state(code_state = "all", year = 2018, showProgress = F)
BRFINAL <- ggplot(BR) +
aes(group = code_region) +
geom_sf(size = 0.5, fill = "white") +
geom_sf(aes(group = code_state), data = RS, fill = "gray50") +
labs(x = "Longitude", y = "Latitude", title = "Brazil") +
annotation_north_arrow(style = north_arrow_fancy_orienteering()) + annotation_scale(location = "br") +
theme_void()
BRFINAL2 <- ggplot(BR) +
aes(group = code_region) +
geom_sf(size = 0.5, fill = "white") +
geom_sf(aes(group = code_state), data = RS, fill = "#8575ff") +
labs(x = "Longitude", y = "Latitude", title = "") + theme_void()
BRFINAL2
munRS <- read_municipality(code_muni="RS", year=2018, showProgress = F)
munRS <- munRS[c(-2),]
munRS$Cluster <- c("Não")
munRS$Cluster <- ifelse(munRS$code_muni == 4300802 | munRS$code_muni == 4302105 | munRS$code_muni == 4303673 | munRS$code_muni == 4305108 |
munRS$code_muni == 4305959 | munRS$code_muni == 4307906 | munRS$code_muni == 4308201 | munRS$code_muni == 4308607 |
munRS$code_muni == 4309407 | munRS$code_muni == 4310439 | munRS$code_muni == 4313086 | munRS$code_muni == 4313359 |
munRS$code_muni == 4319000 | munRS$code_muni == 4322806 | munRS$code_muni == 4323309 | munRS$code_muni == 4312385 |
munRS$code_muni == 4314548 | munRS$code_muni == 4304804 | munRS$code_muni == 4317251 ,"Sim", "Não")
library(RColorBrewer)
munRS <- munRS %>%
mutate(Cluster = ifelse(Cluster == "Sim", "Yes", "No"))
RSmun <- ggplot(munRS) +
aes(fill = Cluster, group = code_state) +
geom_sf(size = 0.5) +
labs(x = "Longitude", y = "Latitude", title = "Rio Grande do Sul") +
annotation_north_arrow(style = north_arrow_fancy_orienteering()) + annotation_scale(location = "br") +
theme_void() + scale_fill_manual(values = c("white", "gray50")) + labs(color = "Cluster")
RSmun2 <- ggplot(munRS) +
aes(fill = Cluster, group = code_state) +
geom_sf(size = 0.5, show.legend = F) +
labs(x = "", y = "", title = "") +
scale_fill_manual(values = c("white", "#8575ff")) + theme_void()
RSmun2
ClusterMun <- munRS
ClusterMun <- ClusterMun[c(18,44,70,92,97,121,164,169,176,190,209,259,280,285,319, 372, 403,483,489),]
Frequencia <- c(1,11,0,0,2,1,4,12,8,1,0,0,1,0,3,0,1,0,0)
ClusterMun <- cbind(ClusterMun,Frequencia)
ClusterMun$Categoria <- cut(ClusterMun$Frequencia, breaks = c(-1, 0, 2, 4, 8, 12),
labels = c("0", "1-2", "3-4", "5-8", "9-12"))
cluster <- ggplot(ClusterMun) +
aes(group = code_state) +
geom_sf(size = 0.5) +
labs(title = "", x = "", y = "") +
geom_sf_label(aes(label = name_muni), label.padding = unit(0.05, "lines"),
label.r = unit(0.05, "lines"), inherit.aes = F, label.size = 0.1) +
theme_bw()
clusterFinal <- ClusterMun %>% ggplot(aes(fill = Categoria)) + geom_sf(size = 0.5) +
scale_fill_manual(values = c("#dfdbff","#c9c2ff", "#b2a8ff", "#9b8fff", "#8575ff")) +
labs(title = "", x = "", y = "", fill = "Frequency") +
geom_sf_text(aes(label = name_muni), check_overlap = F, size = 4) + theme_bw()
clusterFinal
BRFINAL2
RSmun2
library(cowplot)
ggdraw (clusterFinal) +
draw_plot(BRFINAL2, width = 0.18, height = 0.35,
x = 0.10, y = 0.68) +
draw_plot(RSmun2, width = 0.18, height = 0.22,
x = 0.10, y = 0.15)
# As diferenças no mapa mostrado aqui e o mapa do artigo se dão pela dimenscionalidade que eu ajustei quando baixei E plotei o mapa no arquivo word.
library(foreign)
dados<- read.spss("C:/Users/user/Desktop/R/SNA/Netwine/SNA/Dados/Survey.sav")
attach(dados)
library(tibble)
dados <- as_tibble(dados)
dados[dados == 9999] <- NA
library(tidyverse)
library(psych)
library(GPArotation)
library(FactoMineR)
library(factoextra)
library(ggcorrplot)
library(RCurl)
library(knitr)
library(EGAnet)
library(EFAshiny)
library(moments)
library(gridExtra)
library(qgraph)
library(bootnet)
library(igraph)
library(EGAnet)
library(rmarkdown)
paged_table(dados)
dadosAFE <- dados[,c(17,18,19,20,21)] # Escala de inovação
dadosAFE <- dadosAFE[-c(38,41,43,44,45,48,49,50,51,52),] # removendo as vinícolas que não responderam
paged_table(dadosAFE)
my_summary <- function(x) {
funs <- c(mean, sd, skewness, kurtosis, median, mad)
sapply(funs, function(f)f(x, na.rm = TRUE))
}
NumericStatistic <- apply(dadosAFE,2,my_summary)
row.names(NumericStatistic) <- c("Mean","SD","Skewness","Kurtosis","Median","Mad")
NumericStatistic <- as.data.frame(t(NumericStatistic))
NumericStatistic <- round(NumericStatistic,3)
NumericStatistic
## Mean SD Skewness Kurtosis Median Mad
## Novos_produtos_ou_processos 2.761 1.523 0.181 1.530 2.5 2.224
## Aquisição_conhecimentos_externos 3.413 1.087 -0.142 2.062 3.5 0.741
## Treinamentos_capacitações 3.217 0.892 -0.438 3.146 3.0 1.483
## Ações_orientadas_mudanças_gestão 3.217 1.073 -0.550 2.561 3.0 1.483
## Ações_orientadas_mudanças_produtos 3.630 0.853 -0.305 2.531 4.0 1.483
dadosAFE$id <- seq(1:46)
library(reshape2)
dta_long <- melt(dadosAFE, id.vars = c("id"))
colnames(dta_long) <- c("id", "Item", "Response")
Histogram <- ggplot(dta_long, aes(x = Response, fill = Item)) +
geom_histogram(bins = 10, show.legend = F)+
facet_wrap(~Item)+
theme_bw()
Histogram
DensityPlot <- ggplot(dta_long, aes(x = Response, fill = Item))+
geom_density(show.legend = F)+
facet_wrap(~Item)+
theme_bw()
DensityPlot
dadosAFE$id <- NULL
# Estatísticas descritivas das escalas
library(corrplot)
CorMat <- cor(as.matrix(dadosAFE))
corrplot(CorMat,order="hclust",type="upper",method="ellipse",
tl.pos = "lt", tl.cex = 0.8)
corrplot(CorMat,order="hclust",type="lower",method="number",
diag=FALSE,tl.pos="n", cl.pos="n",add=TRUE,tl.cex = 0.8)
# Medidas de correlações entre as variáveis que formam o constructo
# Reter x components, função = nfactors = x
# Rotação = "varimax, "quatimax", "promax", "oblimin", "simplimax", "cluster"
# Tipos: fm = "pa" (principal axis), fm = "ml" maximum likelyhood
correlação <- cor(dadosAFE, use = "pairwise.complete.obs")
kable(correlação)
| Novos_produtos_ou_processos | Aquisição_conhecimentos_externos | Treinamentos_capacitações | Ações_orientadas_mudanças_gestão | Ações_orientadas_mudanças_produtos | |
|---|---|---|---|---|---|
| Novos_produtos_ou_processos | 1.0000000 | 0.1952634 | 0.1535816 | 0.4268234 | 0.4267066 |
| Aquisição_conhecimentos_externos | 0.1952634 | 1.0000000 | 0.4782480 | 0.3404703 | 0.4561423 |
| Treinamentos_capacitações | 0.1535816 | 0.4782480 | 1.0000000 | 0.3904894 | 0.3124052 |
| Ações_orientadas_mudanças_gestão | 0.4268234 | 0.3404703 | 0.3904894 | 1.0000000 | 0.5268769 |
| Ações_orientadas_mudanças_produtos | 0.4267066 | 0.4561423 | 0.3124052 | 0.5268769 | 1.0000000 |
symnum(correlação)
## N Aq__ T Açs_rntds_mdnçs_g Açs_rntds_mdnçs_p
## Novos_produtos_ou_processos 1
## Aquisição_conhecimentos_externos 1
## Treinamentos_capacitações . 1
## Ações_orientadas_mudanças_gestão . . . 1
## Ações_orientadas_mudanças_produtos . . . . 1
## attr(,"legend")
## [1] 0 ' ' 0.3 '.' 0.6 ',' 0.8 '+' 0.9 '*' 0.95 'B' 1
cortest.bartlett(correlação, n = nrow(dadosAFE))
## $chisq
## [1] 50.60162
##
## $p.value
## [1] 2.06829e-07
##
## $df
## [1] 10
KMO(correlação)
## Kaiser-Meyer-Olkin factor adequacy
## Call: KMO(r = correlação)
## Overall MSA = 0.73
## MSA for each item =
## Novos_produtos_ou_processos Aquisição_conhecimentos_externos
## 0.75 0.71
## Treinamentos_capacitações Ações_orientadas_mudanças_gestão
## 0.71 0.75
## Ações_orientadas_mudanças_produtos
## 0.73
KMO(dadosAFE)
## Kaiser-Meyer-Olkin factor adequacy
## Call: KMO(r = dadosAFE)
## Overall MSA = 0.73
## MSA for each item =
## Novos_produtos_ou_processos Aquisição_conhecimentos_externos
## 0.75 0.71
## Treinamentos_capacitações Ações_orientadas_mudanças_gestão
## 0.71 0.75
## Ações_orientadas_mudanças_produtos
## 0.73
scree(dadosAFE) # Gráfico de entulho do SPSS (Critério Kaiser)
fa(dadosAFE, cor = "cor")
## Factor Analysis using method = minres
## Call: fa(r = dadosAFE, cor = "cor")
## Standardized loadings (pattern matrix) based upon correlation matrix
## MR1 h2 u2 com
## Novos_produtos_ou_processos 0.48 0.24 0.76 1
## Aquisição_conhecimentos_externos 0.59 0.35 0.65 1
## Treinamentos_capacitações 0.53 0.28 0.72 1
## Ações_orientadas_mudanças_gestão 0.71 0.51 0.49 1
## Ações_orientadas_mudanças_produtos 0.74 0.55 0.45 1
##
## MR1
## SS loadings 1.92
## Proportion Var 0.38
##
## Mean item complexity = 1
## Test of the hypothesis that 1 factor is sufficient.
##
## The degrees of freedom for the null model are 10 and the objective function was 1.19 with Chi Square of 50.6
## The degrees of freedom for the model are 5 and the objective function was 0.16
##
## The root mean square of the residuals (RMSR) is 0.08
## The df corrected root mean square of the residuals is 0.12
##
## The harmonic number of observations is 46 with the empirical chi square 6.52 with prob < 0.26
## The total number of observations was 46 with Likelihood Chi Square = 6.82 with prob < 0.23
##
## Tucker Lewis Index of factoring reliability = 0.908
## RMSEA index = 0.086 and the 90 % confidence intervals are 0 0.24
## BIC = -12.32
## Fit based upon off diagonal values = 0.95
## Measures of factor score adequacy
## MR1
## Correlation of (regression) scores with factors 0.88
## Multiple R square of scores with factors 0.78
## Minimum correlation of possible factor scores 0.56
nofactors <- fa.parallel(dadosAFE, fm = "pa", fa = "fa", cor = "cor") # Linhas paralelas, é um critério mais rigoroso que do SPSS
## Parallel analysis suggests that the number of factors = 1 and the number of components = NA
sum(nofactors$fa.values > 1) # Critério Kaiser 1 (Componentes)
## [1] 1
sum(nofactors$fa.values > 0.7) # Critério Kaiser 0.7 (Fatores)
## [1] 1
entulho <- scree(dadosAFE)
entulho$pcv # Autovalores pelo critério Kaiser
## [1] 2.5031930 0.9783838 0.5960619 0.5276605 0.3947008
entulho$fv # Autovalores pelo critério das linhas paralelas
## [1] 1.91967491 0.28490771 0.04469639 -0.11879784 -0.21080618
NumericRule <- VSS(dadosAFE, n = 2, plot = F, rotate = "promax", fm = "pa")
temp1 <- data.frame(nFactor = row.names(NumericRule$vss.stats),
VSS1 = NumericRule$cfit.1, VSS2 = NumericRule$cfit.2,
MAP = NumericRule$map)
temp2 <- NumericRule$vss.stats[,c(6:8,11)]
NumericRule <- cbind(temp1,temp2)
NumericRule # 1 fator é melhor, maior VSS, menor MAP, menor BIC
## nFactor VSS1 VSS2 MAP RMSEA BIC SABIC
## 1 1 0.7358353 0.0000000 0.08786297 0.0863316 -12.317872 3.3595988
## 2 2 0.6368326 0.7026628 0.18466763 0.1102632 -2.247152 0.8883418
## SRMR
## 1 0.08418020
## 2 0.03045586
# Using the Very Simple Structure Criterion (VSS), VSS for a given complexity will tend to peak at the optimal (most interpretable) number of factors (Revelle and Rocklin, 1979)
# Wayne Velicer's Minimum Average Partial (MAP) criterion.
# BIC
set.seed(123)
EFA <- fa(dadosAFE, nfactors = 1,
rotate = "promax", fm = "pa",
scores = T, missing = F, cor = "cor",
n.iter = 10)
EFA
## Factor Analysis with confidence intervals using method = fa(r = dadosAFE, nfactors = 1, n.iter = 10, rotate = "promax",
## scores = T, missing = F, fm = "pa", cor = "cor")
## Factor Analysis using method = pa
## Call: fa(r = dadosAFE, nfactors = 1, n.iter = 10, rotate = "promax",
## scores = T, missing = F, fm = "pa", cor = "cor")
## Standardized loadings (pattern matrix) based upon correlation matrix
## PA1 h2 u2 com
## Novos_produtos_ou_processos 0.48 0.24 0.76 1
## Aquisição_conhecimentos_externos 0.59 0.35 0.65 1
## Treinamentos_capacitações 0.53 0.28 0.72 1
## Ações_orientadas_mudanças_gestão 0.71 0.51 0.49 1
## Ações_orientadas_mudanças_produtos 0.74 0.55 0.45 1
##
## PA1
## SS loadings 1.92
## Proportion Var 0.38
##
## Mean item complexity = 1
## Test of the hypothesis that 1 factor is sufficient.
##
## The degrees of freedom for the null model are 10 and the objective function was 1.19 with Chi Square of 50.6
## The degrees of freedom for the model are 5 and the objective function was 0.16
##
## The root mean square of the residuals (RMSR) is 0.08
## The df corrected root mean square of the residuals is 0.12
##
## The harmonic number of observations is 46 with the empirical chi square 6.52 with prob < 0.26
## The total number of observations was 46 with Likelihood Chi Square = 6.83 with prob < 0.23
##
## Tucker Lewis Index of factoring reliability = 0.908
## RMSEA index = 0.086 and the 90 % confidence intervals are 0 0.24
## BIC = -12.32
## Fit based upon off diagonal values = 0.95
## Measures of factor score adequacy
## PA1
## Correlation of (regression) scores with factors 0.88
## Multiple R square of scores with factors 0.78
## Minimum correlation of possible factor scores 0.55
##
## Coefficients and bootstrapped confidence intervals
## low PA1 upper
## Novos_produtos_ou_processos 0.32 0.48 0.81
## Aquisição_conhecimentos_externos 0.35 0.59 0.90
## Treinamentos_capacitações 0.20 0.53 0.85
## Ações_orientadas_mudanças_gestão 0.45 0.71 0.95
## Ações_orientadas_mudanças_produtos 0.64 0.74 0.89
options(scienpen = 999)
# Calculo da AVE^2
SS<-colSums(EFA$Structure^2)
SS/length(EFA$communality)
## PA1
## 0.3837802
mean(EFA$communality)
## [1] 0.3837802
# Avaliar se o Tucker Lewis Index of factoring reliability > .90
# Avaliar se o RMSEA < 0.08 e o SRMR < 0.10
1-((EFA$STATISTIC-EFA$dof)/(EFA$null.chisq-EFA$null.dof)) #CFI Comparative Fit Index > 0.90
## [1] 0.9550428
attributes(EFA) # Atributos da EFA
## $names
## [1] "residual" "dof" "chi"
## [4] "nh" "rms" "EPVAL"
## [7] "crms" "EBIC" "ESABIC"
## [10] "fit" "fit.off" "sd"
## [13] "factors" "complexity" "n.obs"
## [16] "objective" "criteria" "STATISTIC"
## [19] "PVAL" "Call" "null.model"
## [22] "null.dof" "null.chisq" "TLI"
## [25] "RMSEA" "BIC" "SABIC"
## [28] "r.scores" "R2" "valid"
## [31] "weights" "rotation" "communality"
## [34] "communalities" "uniquenesses" "values"
## [37] "e.values" "loadings" "model"
## [40] "fm" "Structure" "communality.iterations"
## [43] "method" "scores" "R2.scores"
## [46] "r" "np.obs" "fn"
## [49] "Vaccounted" "cis"
##
## $class
## [1] "psych" "fa.ci"
EFA$communality # Mostrar as comunalidades
## Novos_produtos_ou_processos Aquisição_conhecimentos_externos
## 0.2350313 0.3498182
## Treinamentos_capacitações Ações_orientadas_mudanças_gestão
## 0.2795044 0.5051139
## Ações_orientadas_mudanças_produtos
## 0.5494329
EFA$uniquenesses # Mostras a unicidade
## Novos_produtos_ou_processos Aquisição_conhecimentos_externos
## 0.7649687 0.6501818
## Treinamentos_capacitações Ações_orientadas_mudanças_gestão
## 0.7204956 0.4948861
## Ações_orientadas_mudanças_produtos
## 0.4505671
EFA$TLI
## [1] 0.9082928
EFA$R2.scores
## [1] 0.77713
EFA$RMSEA
## RMSEA lower upper confidence
## 0.0863316 0.0000000 0.2396494 0.9000000
EFA$loadings # Mostrar as cargas fatoriais
##
## Loadings:
## PA1
## Novos_produtos_ou_processos 0.485
## Aquisição_conhecimentos_externos 0.591
## Treinamentos_capacitações 0.529
## Ações_orientadas_mudanças_gestão 0.711
## Ações_orientadas_mudanças_produtos 0.741
##
## PA1
## SS loadings 1.919
## Proportion Var 0.384
fa.diagram(EFA, simple = T,cut = 0.33,
sort = T,errors = T,e.size = 0.05)
Fator_S <- c(1:5)
psych::alpha(dadosAFE[, Fator_S]) # Alfa padronizado = 0.75
##
## Reliability analysis
## Call: psych::alpha(x = dadosAFE[, Fator_S])
##
## raw_alpha std.alpha G6(smc) average_r S/N ase mean sd median_r
## 0.72 0.75 0.73 0.37 2.9 0.066 3.2 0.76 0.41
##
## lower alpha upper 95% confidence boundaries
## 0.59 0.72 0.85
##
## Reliability if an item is dropped:
## raw_alpha std.alpha G6(smc) average_r S/N
## Novos_produtos_ou_processos 0.74 0.74 0.70 0.42 2.9
## Aquisição_conhecimentos_externos 0.67 0.70 0.66 0.37 2.4
## Treinamentos_capacitações 0.69 0.72 0.68 0.40 2.6
## Ações_orientadas_mudanças_gestão 0.62 0.67 0.64 0.34 2.0
## Ações_orientadas_mudanças_produtos 0.63 0.66 0.63 0.33 2.0
## alpha se var.r med.r
## Novos_produtos_ou_processos 0.063 0.007 0.42
## Aquisição_conhecimentos_externos 0.075 0.016 0.41
## Treinamentos_capacitações 0.074 0.013 0.43
## Ações_orientadas_mudanças_gestão 0.091 0.019 0.37
## Ações_orientadas_mudanças_produtos 0.088 0.017 0.37
##
## Item statistics
## n raw.r std.r r.cor r.drop mean sd
## Novos_produtos_ou_processos 46 0.71 0.63 0.48 0.40 2.8 1.52
## Aquisição_conhecimentos_externos 46 0.67 0.70 0.60 0.47 3.4 1.09
## Treinamentos_capacitações 46 0.61 0.66 0.54 0.43 3.2 0.89
## Ações_orientadas_mudanças_gestão 46 0.76 0.76 0.69 0.59 3.2 1.07
## Ações_orientadas_mudanças_produtos 46 0.75 0.77 0.71 0.62 3.6 0.85
##
## Non missing response frequency for each item
## 1 2 3 4 5 miss
## Novos_produtos_ou_processos 0.30 0.20 0.11 0.22 0.17 0
## Aquisição_conhecimentos_externos 0.02 0.22 0.26 0.33 0.17 0
## Treinamentos_capacitações 0.04 0.13 0.43 0.35 0.04 0
## Ações_orientadas_mudanças_gestão 0.09 0.15 0.28 0.41 0.07 0
## Ações_orientadas_mudanças_produtos 0.00 0.11 0.28 0.48 0.13 0
#library(openxlsx)
#write.xlsx(scores, 'scores.xlsx')
#library(readxl)
#scores <- read_excel("C:/Users/user/Desktop/R/SNA/Netwine/SNA/Dados/scores.xlsx", col_types = c("text", "numeric"))
#dados2 <- dados
#dados2 <- cbind(dados2, scores$PA1)
#names(dados2)[names(dados2) == "scores$PA1"] <- "Fator_inovação"
#dados[dados == "NA"] <- NA
#library(haven)
#write_sav(dados2, "dados_sna.sav")
# Processo apenas para salvar os resultados em uma nova base de dados
library(igraph)
library(readxl)
citation("igraph")
##
## To cite 'igraph' in publications use:
##
## Csardi G, Nepusz T: The igraph software package for complex network
## research, InterJournal, Complex Systems 1695. 2006. http://igraph.org
##
## A BibTeX entry for LaTeX users is
##
## @Article{,
## title = {The igraph software package for complex network research},
## author = {Gabor Csardi and Tamas Nepusz},
## journal = {InterJournal},
## volume = {Complex Systems},
## pages = {1695},
## year = {2006},
## url = {http://igraph.org},
## }
Nos1 <- read_excel("C:/Users/user/Desktop/R/SNA/Netwine/Recebeu inf tec/ligacoes.xlsx")
Lacos1 <- read_excel("C:/Users/user/Desktop/R/SNA/Netwine/NETWINE_Reciprocidade/Recebeu inf tec/Nos.xlsx")
net1 <- graph.data.frame(d = Nos1, vertices = Lacos1, directed = T) # Criando a rede
V(net1)$Municipio
## [1] "Bento_Gonçalves" "Farroupilha" "Caxias_do_Sul" "Bento_Gonçalves"
## [5] "Flores_da_Cunha" "Farroupilha" "Bento_Gonçalves" "Pinto_Bandeira"
## [9] "Garibaldi" "Farroupilha" "Flores_da_Cunha" "Bento_Gonçalves"
## [13] "Flores_da_Cunha" "Flores_da_Cunha" "Bento_Gonçalves" "Flores_da_Cunha"
## [17] "Farroupilha" "Flores_da_Cunha" "Bento_Gonçalves" "Garibaldi"
## [21] "Bento_Gonçalves" "Bento_Gonçalves" "Caxias_do_Sul" "Garibaldi"
## [25] "Flores_da_Cunha" "Garibaldi" "Guapore" "Guapore"
## [29] "Bento_Gonçalves" "Garibaldi" "Flores_da_Cunha" "Bento_Gonçalves"
## [33] "Garibaldi" "Flores_da_Cunha" "Garibaldi" "São_Marcos"
## [37] "Antonio_Prado" "Bento_Gonçalves" "Garibaldi" "Pinto_Bandeira"
## [41] "Farroupilha" "Bento_Gonçalves" "Farroupilha" "Vacaria"
## [45] "Bento_Gonçalves" "Flores_da_Cunha" "Flores_da_Cunha" "Garibaldi"
## [49] "Bento_Gonçalves" "Bento_Gonçalves" "Bento_Gonçalves" "Canela"
## [53] "Pinto_Bandeira" "Flores_da_Cunha" "Nova_Padua" "Cotipora"
E(net1)
## + 333/333 edges from a030f5e (vertex names):
## [1] V1->V6 V1->V10 V1->V38 V1->V39 V1->V40 V2->V3 V2->V6 V2->V20 V2->V26
## [10] V2->V40 V3->V2 V3->V41 V3->V4 V3->V5 V3->V6 V3->V8 V3->V9 V3->V12
## [19] V3->V42 V3->V13 V3->V14 V3->V15 V3->V43 V3->V19 V3->V44 V3->V22 V3->V24
## [28] V3->V25 V3->V26 V3->V31 V3->V34 V3->V36 V4->V42 V4->V45 V4->V19 V5->V8
## [37] V5->V10 V5->V11 V5->V46 V5->V13 V5->V16 V5->V18 V5->V44 V5->V26 V5->V47
## [46] V5->V31 V5->V34 V6->V2 V6->V3 V6->V4 V6->V10 V6->V43 V6->V29 V6->V40
## [55] V7->V4 V8->V3 V8->V4 V8->V5 V8->V6 V8->V9 V8->V48 V8->V42 V8->V15
## [64] V8->V38 V8->V49 V8->V19 V8->V44 V8->V21 V8->V22 V8->V23 V8->V24 V8->V26
## [73] V8->V29 V8->V47 V8->V50 V8->V51 V8->V34 V8->V35 V8->V40 V9->V4 V9->V5
## [82] V9->V8 V9->V42 V9->V38 V9->V19 V9->V23 V9->V24 V9->V26 V9->V47 V9->V51
## + ... omitted several edges
E(net1)$Peso
## [1] 2 2 2 2 2 1 2 1 1 1 1 1 2 1 2 3 2 1 1 1 1 2 1 2 1 1 1 1 2 1 1 1 1 3 1 3 3
## [38] 3 3 2 3 3 3 3 2 3 1 3 2 1 3 1 1 3 3 3 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1
## [75] 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 1 1 2 2 2 3 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2
## [112] 2 2 2 2 2 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 3 3 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1
## [149] 1 2 1 1 1 2 3 2 1 2 1 2 2 2 2 3 1 1 1 1 2 2 2 1 1 2 3 1 1 1 1 1 1 1 1 1 1
## [186] 1 1 2 3 1 1 1 2 3 2 3 1 1 2 2 2 1 2 2 2 2 3 3 3 3 3 1 3 3 3 1 2 2 2 2 2 1
## [223] 1 2 2 2 2 2 2 2 1 2 2 2 3 1 1 1 1 2 2 2 1 1 2 1 1 3 2 1 3 2 2 3 2 3 1 2 2
## [260] 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 3 3 2 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1
## [297] 2 1 1 1 2 2 2 1 3 3 2 1 1 3 1 2 3 2 3 2 2 3 2 2 3 2 2 1 1 1 1 1 1 1 1 1 1
E(net1)$Freq
## NULL
class(net1)
## [1] "igraph"
net1
## IGRAPH a030f5e DN-- 56 333 --
## + attr: name (v/c), Vinicola (v/c), Cod_mun (v/n), Municipio (v/c),
## | Producao_total (v/n), Peso (e/n)
## + edges from a030f5e (vertex names):
## [1] V1->V6 V1->V10 V1->V38 V1->V39 V1->V40 V2->V3 V2->V6 V2->V20 V2->V26
## [10] V2->V40 V3->V2 V3->V41 V3->V4 V3->V5 V3->V6 V3->V8 V3->V9 V3->V12
## [19] V3->V42 V3->V13 V3->V14 V3->V15 V3->V43 V3->V19 V3->V44 V3->V22 V3->V24
## [28] V3->V25 V3->V26 V3->V31 V3->V34 V3->V36 V4->V42 V4->V45 V4->V19 V5->V8
## [37] V5->V10 V5->V11 V5->V46 V5->V13 V5->V16 V5->V18 V5->V44 V5->V26 V5->V47
## [46] V5->V31 V5->V34 V6->V2 V6->V3 V6->V4 V6->V10 V6->V43 V6->V29 V6->V40
## [55] V7->V4 V8->V3 V8->V4 V8->V5 V8->V6 V8->V9 V8->V48 V8->V42 V8->V15
## + ... omitted several edges
# Grafo simples
plot(net1, edge.arrow.size = 0.1, vertex.label.color = "black", main = "Netwine")
set.seed(222)
plot(net1, vertex.color = "orange", edge.arrow.size = 0.1, vertex.size = 30, vertex.label.cex = 1, vertex.label.color = "black",
main = "Netwine")
# Densidade - arestas presentes/arestas possíveis
edge_density(net1, loops = F)
## [1] 0.1081169
# Reciprocidade - proporção de vínculos recíprocos (rede direcionada)
reciprocity(net1)
## [1] 0.3483483
# Transitividade - avalia a probabilidade dos vértices adjacentes a um vértice estarem conectados
transitivity(net1, type = "global")
## [1] 0.3660131
transitividadeLocal1 <- transitivity(net1, type = "local")
triad_census(net1)
## [1] 16094 7190 1660 594 421 393 296 503 138 2 121 50
## [13] 130 32 69 27
# Diâmetro - maior distância geodésica - comprimento do caminho mais curso entre dois vértices
diameter(net1, directed = T, weight = NA)
## [1] 5
# Graus - número de arestas conectadas de cada nó
degree(net1, mode = "all", normalized = F) # todos
## V1 V2 V3 V4 V5 V6 V7 V8 V9 V10 V11 V12 V13 V14 V15 V16 V17 V18 V19 V20
## 8 10 31 20 19 14 1 38 17 37 16 12 11 17 10 11 6 20 28 11
## V21 V22 V23 V24 V25 V26 V27 V28 V29 V30 V31 V32 V33 V34 V35 V36 V37 V38 V39 V40
## 17 7 12 19 14 26 3 7 8 13 12 5 9 32 12 2 16 10 4 5
## V41 V42 V43 V44 V45 V46 V47 V48 V49 V50 V51 V52 V53 V54 V55 V56
## 5 27 3 9 2 6 12 2 8 2 8 3 5 1 3 0
degree(net1, mode = "in") # Flechas que estão chegando
## V1 V2 V3 V4 V5 V6 V7 V8 V9 V10 V11 V12 V13 V14 V15 V16 V17 V18 V19 V20
## 3 5 9 17 7 7 0 14 5 15 4 6 8 6 5 5 0 6 19 4
## V21 V22 V23 V24 V25 V26 V27 V28 V29 V30 V31 V32 V33 V34 V35 V36 V37 V38 V39 V40
## 5 4 4 7 3 20 2 1 3 1 7 1 4 12 3 1 5 10 4 5
## V41 V42 V43 V44 V45 V46 V47 V48 V49 V50 V51 V52 V53 V54 V55 V56
## 5 17 3 9 2 6 12 2 8 2 8 3 5 1 3 0
degree(net1, mode = "out") # Flechas que estão saindo
## V1 V2 V3 V4 V5 V6 V7 V8 V9 V10 V11 V12 V13 V14 V15 V16 V17 V18 V19 V20
## 5 5 22 3 12 7 1 24 12 22 12 6 3 11 5 6 6 14 9 7
## V21 V22 V23 V24 V25 V26 V27 V28 V29 V30 V31 V32 V33 V34 V35 V36 V37 V38 V39 V40
## 12 3 8 12 11 6 1 6 5 12 5 4 5 20 9 1 11 0 0 0
## V41 V42 V43 V44 V45 V46 V47 V48 V49 V50 V51 V52 V53 V54 V55 V56
## 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0
centr_degree(net1, mode = "in", normalized = T)
## $res
## [1] 3 5 9 17 7 7 0 14 5 15 4 6 8 6 5 5 0 6 19 4 5 4 4 7 3
## [26] 20 2 1 3 1 7 1 4 12 3 1 5 10 4 5 5 17 3 9 2 6 12 2 8 2
## [51] 8 3 5 1 3 0
##
## $centralization
## [1] 0.2555195
##
## $theoretical_max
## [1] 3080
grauTotal1 <- degree(net1, mode = "all")
grauIn1 <- degree(net1, mode = "in")
grauOut1 <- degree(net1, mode = "out")
dyad_census(net1)
## $mut
## [1] 58
##
## $asym
## [1] 217
##
## $null
## [1] 1265
triad_census(net1)
## [1] 16094 7190 1660 594 421 393 296 503 138 2 121 50
## [13] 130 32 69 27
sd(grauTotal1)
## [1] 9.213979
# Distribuição dos grau
grau.dist1 <- degree_distribution(net1, cumulative = T, mode = "all")
plot(x = 0:max(grauTotal1), y = 1-grau.dist1, pch = 19, cex = 1.5, col = "orange",
xlab = "Grau", ylab = "Freq. acumulada", main = "Escreva o título aqui")
# Proximidade
closeness1 <- closeness(net1, mode = "all", weight = NA)
centr_clo1 <- centr_clo(net1, mode = "all", normalized = T)$res
eigen_centrality1 <- eigen_centrality(net1, directed = T, weights = NA)$vector
centr_eigen1 <- centr_eigen(net1, directed = T, normalized = T)$vector
closeness(net1, vids = V(net1),
mode = c("out", "in", "all","total"), weights = NULL, normalized = FALSE)
## V1 V2 V3 V4 V5 V6
## 0.0033222591 0.0034364261 0.0039215686 0.0031948882 0.0037174721 0.0035335689
## V7 V8 V9 V10 V11 V12
## 0.0032258065 0.0039840637 0.0036630037 0.0038910506 0.0037037037 0.0035335689
## V13 V14 V15 V16 V17 V18
## 0.0033444816 0.0035587189 0.0034602076 0.0033112583 0.0044052863 0.0036900369
## V19 V20 V21 V22 V23 V24
## 0.0036231884 0.0033222591 0.0037037037 0.0029239766 0.0034722222 0.0036630037
## V25 V26 V27 V28 V29 V30
## 0.0037313433 0.0034129693 0.0030303030 0.0034965035 0.0034129693 0.0036496350
## V31 V32 V33 V34 V35 V36
## 0.0034246575 0.0031948882 0.0033003300 0.0038759690 0.0035335689 0.0032573290
## V37 V38 V39 V40 V41 V42
## 0.0035335689 0.0003246753 0.0003246753 0.0003246753 0.0003246753 0.0035842294
## V43 V44 V45 V46 V47 V48
## 0.0003246753 0.0003246753 0.0003246753 0.0003246753 0.0003246753 0.0003246753
## V49 V50 V51 V52 V53 V54
## 0.0003246753 0.0003246753 0.0003246753 0.0003246753 0.0003246753 0.0003246753
## V55 V56
## 0.0003246753 0.0003246753
# Entrelaçamento
betweenness1 <- betweenness(net1, directed = T, weights = NA, normalized = F)
edge_betweenness(net1, directed = T, weights = NA)
## [1] 10.427778 40.820116 2.333333 16.733333 3.506061 41.094444 5.794444
## [8] 22.697253 5.627778 6.159307 13.162288 8.050000 5.107576 9.931227
## [15] 7.095310 24.326984 10.504762 21.082540 3.963492 3.255556 49.728571
## [22] 13.700000 12.661111 3.111111 5.019048 10.374206 25.059318 29.748413
## [29] 3.911111 14.287673 16.409524 37.194444 58.822819 29.575758 73.535828
## [36] 19.930988 11.515115 13.266306 4.869048 2.116667 10.958730 6.769048
## [43] 1.533333 3.616667 1.920635 7.676984 5.683333 5.324242 33.698687
## [50] 4.940909 21.907454 5.655556 12.116270 4.158442 53.000000 22.306746
## [57] 5.274242 15.583894 11.333947 6.338889 31.216667 2.816667 16.217857
## [64] 8.833333 7.590476 3.518723 8.371429 26.849242 12.457540 19.869841
## [71] 22.475660 6.651623 12.881385 4.212302 18.980952 5.015584 14.736183
## [78] 90.006116 21.161039 2.190909 7.437179 11.574603 3.946825 3.261905
## [85] 3.426623 6.836508 10.491847 4.726190 1.253968 1.600433 10.014683
## [92] 33.562771 16.324625 42.961905 9.000433 19.278846 11.396970 16.667857
## [99] 12.190476 5.977778 19.683333 11.166667 38.847086 8.488131 11.397619
## [106] 17.146429 38.142829 7.233333 9.305556 19.019048 6.633766 31.820635
## [113] 28.191558 2.583333 20.610426 2.807576 6.584524 3.016667 4.361111
## [120] 2.869048 6.590115 3.761111 6.316667 5.616667 5.134199 33.563803
## [127] 3.226190 27.046415 5.054798 3.850000 9.242063 36.923016 14.016667
## [134] 5.016667 4.833333 33.799315 14.485714 4.795238 18.466667 13.854762
## [141] 3.000000 16.716667 9.226623 38.000000 5.535714 2.592857 32.248399
## [148] 5.427381 7.778211 15.985714 3.250000 5.870707 20.880456 13.039272
## [155] 2.369048 46.878805 25.133333 11.341667 1.000000 5.733333 5.416667
## [162] 4.375000 10.751787 3.307576 17.224423 5.508009 8.517100 2.250000
## [169] 9.519048 12.167100 4.053247 1.916667 4.813492 2.783333 7.922727
## [176] 13.626623 8.750433 65.341592 47.567360 22.783983 10.432540 6.288889
## [183] 12.930037 20.720238 68.672941 11.947894 17.037454 3.566667 22.058425
## [190] 4.914560 5.758333 4.674242 2.424675 23.462721 6.165090 25.335376
## [197] 6.783333 7.176659 4.166667 13.016342 11.468204 3.500000 41.176190
## [204] 31.202500 22.517305 34.243013 3.086905 3.708766 10.277381 1.166667
## [211] 8.169084 1.000000 21.131349 3.015152 12.580952 13.309957 19.351437
## [218] 2.485714 14.582179 17.311941 5.203968 2.285714 4.336905 15.787302
## [225] 4.869048 1.920635 45.209921 19.610750 11.776984 2.817857 5.287302
## [232] 1.200000 2.292857 1.920635 2.887302 8.340476 7.559524 9.938492
## [239] 24.860448 39.710700 6.594444 14.631385 36.057850 7.583766 55.226190
## [246] 25.663095 8.209524 1.700000 9.051190 7.886905 5.316667 35.818651
## [253] 3.333766 8.342857 3.903571 9.319048 16.695346 4.798846 6.409957
## [260] 2.225433 1.000000 1.000000 5.836147 2.833333 6.483009 2.174242
## [267] 4.250000 6.503608 7.896775 24.887698 10.280952 13.582143 12.997619
## [274] 7.232540 4.700000 1.476190 42.767460 22.551732 8.424242 18.775974
## [281] 13.763370 5.891342 16.351732 4.832418 9.715657 14.779509 8.167172
## [288] 11.156133 23.855628 9.561905 2.724242 19.550830 12.394059 4.178247
## [295] 3.969048 28.594949 14.223088 3.369913 1.878968 15.682912 3.167100
## [302] 41.971429 6.701623 3.444048 23.636147 9.453571 13.733333 13.080286
## [309] 2.200000 42.827381 1.750000 52.194444 9.612410 1.833333 9.033983
## [316] 12.548160 2.785714 8.523160 2.033333 5.119913 32.339286 1.250000
## [323] 13.654870 19.283333 64.019936 5.167100 45.233788 20.585761 10.227778
## [330] 12.844048 7.259163 7.920635 9.466017
centr_betw(net1, directed = T, normalized = T)
## $res
## [1] 21.8206210 29.3732268 275.6842657 109.9344045 37.8568543 35.8015596
## [7] 0.0000000 342.7003386 14.7616744 362.4376512 18.2514430 29.9832695
## [13] 3.9563492 110.7140332 12.0325619 40.2882867 0.0000000 52.3611305
## [19] 211.4880120 17.9575758 123.8777584 7.8472222 9.0493506 94.6547203
## [25] 21.6321789 77.4385947 3.2261905 5.8273810 8.7178932 8.2099206
## [31] 17.6451881 4.1761905 17.4066600 198.1249362 64.8263903 0.1944444
## [37] 46.7341631 0.0000000 0.0000000 0.0000000 0.0000000 150.0075591
## [43] 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
## [49] 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
## [55] 0.0000000 0.0000000
##
## $centralization
## [1] 0.1084145
##
## $theoretical_max
## [1] 163350
# Distância
mean_distance(net1, directed = T)
## [1] 2.307887
# Burt’s constraint - Structural holes#
Burtconstraint <- constraint(net1, nodes = V(net1), weights = NULL)
# Força #
strength1 <- strength(net1, vids = V(net1), mode = "all", loops = TRUE, weights = NULL)
#Homofilia - tendência de um nó se conectar a outro nó similar através de uma varíavel/número de nós
assortativity_degree(net1, directed=T) #Correlação entre os nós.
## [1] -0.1501508
# Autoridade e Hub
hub1 <- hub_score(net1)$vector #hub
autoridade1 <- authority.score(net1)$vector # autoridade
par(mfrow = c(1,2))
set.seed(123)
plot(net1,
vertex.size = hub1*50,
vertex.color = rainbow(56),
edge.arrow.size = 0.1,
layout = layout.kamada.kawai, main = "HUBS", vertex.label.color = "black")
plot(net1,
vertex.size = autoridade1*50,
vertex.color = rainbow(56),
edge.arrow.size = 0.1,
layout = layout.kamada.kawai, main = "Autoridade", vertex.label.color = "black")
dev.off()
## null device
## 1
# Cohesive_blocks - Modelo centro-periferia #
# Geração do modelo centro-periferia
# Cada vinícola recebeu um rótulo de acordo com a sua posição (centro X periferia)
# Os dados foram depois exportados como arquivo pajek no software Gephi para a formação da rede disponível no artigo
BLOKS1 <- cohesive_blocks(as.undirected(net1), labels = TRUE)
BLOKS1$parent
## [1] 0 1 2 3 4 5 6 7
BLOKS1$cohesion
## [1] 0 1 2 3 4 5 6 7
BLOKS1$blocks
## [[1]]
## + 56/56 vertices, named, from a0ed695:
## [1] V1 V2 V3 V4 V5 V6 V7 V8 V9 V10 V11 V12 V13 V14 V15 V16 V17 V18 V19
## [20] V20 V21 V22 V23 V24 V25 V26 V27 V28 V29 V30 V31 V32 V33 V34 V35 V36 V37 V38
## [39] V39 V40 V41 V42 V43 V44 V45 V46 V47 V48 V49 V50 V51 V52 V53 V54 V55 V56
##
## [[2]]
## + 55/56 vertices, named, from a0ed695:
## [1] V1 V2 V3 V4 V5 V6 V7 V8 V9 V10 V11 V12 V13 V14 V15 V16 V17 V18 V19
## [20] V20 V21 V22 V23 V24 V25 V26 V27 V28 V29 V30 V31 V32 V33 V34 V35 V36 V37 V38
## [39] V39 V40 V41 V42 V43 V44 V45 V46 V47 V48 V49 V50 V51 V52 V53 V54 V55
##
## [[3]]
## + 53/56 vertices, named, from a0ed695:
## [1] V1 V2 V3 V4 V5 V6 V8 V9 V10 V11 V12 V13 V14 V15 V16 V17 V18 V19 V20
## [20] V21 V22 V23 V24 V25 V26 V27 V28 V29 V30 V31 V32 V33 V34 V35 V36 V37 V38 V39
## [39] V40 V41 V42 V43 V44 V45 V46 V47 V48 V49 V50 V51 V52 V53 V55
##
## [[4]]
## + 49/56 vertices, named, from a0ed695:
## [1] V1 V2 V3 V4 V5 V6 V8 V9 V10 V11 V12 V13 V14 V15 V16 V17 V18 V19 V20
## [20] V21 V22 V23 V24 V25 V26 V27 V28 V29 V30 V31 V32 V33 V34 V35 V37 V38 V39 V40
## [39] V41 V42 V43 V44 V46 V47 V49 V51 V52 V53 V55
##
## [[5]]
## + 45/56 vertices, named, from a0ed695:
## [1] V1 V2 V3 V4 V5 V6 V8 V9 V10 V11 V12 V13 V14 V15 V16 V17 V18 V19 V20
## [20] V21 V22 V23 V24 V25 V26 V28 V29 V30 V31 V32 V33 V34 V35 V37 V38 V39 V40 V41
## [39] V42 V44 V46 V47 V49 V51 V53
##
## [[6]]
## + 43/56 vertices, named, from a0ed695:
## [1] V1 V2 V3 V4 V5 V6 V8 V9 V10 V11 V12 V13 V14 V15 V16 V17 V18 V19 V20
## [20] V21 V22 V23 V24 V25 V26 V28 V29 V30 V31 V33 V34 V35 V37 V38 V40 V41 V42 V44
## [39] V46 V47 V49 V51 V53
##
## [[7]]
## + 37/56 vertices, named, from a0ed695:
## [1] V2 V3 V4 V5 V6 V8 V9 V10 V11 V12 V13 V14 V15 V16 V17 V18 V19 V20 V21
## [20] V22 V23 V24 V25 V26 V30 V31 V33 V34 V35 V37 V38 V42 V44 V46 V47 V49 V51
##
## [[8]]
## + 29/56 vertices, named, from a0ed695:
## [1] V3 V4 V5 V8 V9 V10 V11 V12 V14 V15 V16 V18 V19 V21 V22 V23 V24 V25 V26
## [20] V30 V31 V34 V35 V37 V38 V42 V47 V49 V51
hierarchy(BLOKS1)
## IGRAPH a18c49a D--- 8 7 --
## + edges from a18c49a:
## [1] 1->2 2->3 3->4 4->5 5->6 6->7 7->8
max_cohesion(BLOKS1)
## [1] 5 6 7 7 7 6 1 7 7 7 7 7 6 7 7 7 6 7 7 6 7 7 7 7 7 7 3 5 5 7 7 4 6 7 7 2 7 7
## [39] 4 5 5 7 3 6 2 6 7 2 7 2 7 3 5 1 3 0
length(BLOKS1)
## [1] 8
blok1 <- max_cohesion(BLOKS1)
blok1 <- ifelse(blok1 == 7, 1 , 0)
V(net1)$blokss1 <- blok1
blok1 <- factor(blok1,label = c("Periferia","Centro"), levels = 0:1)
#export_pajek(mwBlocks, mw, file="/tmp/mwBlocks.paj")
par(mar = c(0,0,0,0))
plot(BLOKS1, net1, vertex.size = grauTotal1, edge.arrow.size = 0.1,
vertex.label = V(net1)$id)
plot(net1, vertex.size = grauTotal1, edge.arrow.size = 0.1,
vertex.label = V(net1)$id, vertex.color = V(net1)$blokss1)
coreness <- graph.coreness(net1, mode = "all")
colbar <- rainbow(max(coreness))
plot(net1, vertex.color=colbar[coreness],
vertex.frame.color=colbar[coreness],
edge.arrow.size = 0.001, vertex.size = grauTotal1)
# eccentricity #
eccentricity1 <- eccentricity(net1, vids = V(net1), mode = c("all", "out", "in",
"total"))
eccentricity2 <- eccentricity(net1, vids = V(net1), mode = c("all"))
# Ego #
ego_size1 <- ego_size(net1, order = 1, nodes = V(net1), mode = "all", mindist = 0)
# Circunferência #
girth(net1, circle = TRUE)
## $girth
## [1] 3
##
## $circle
## + 3/56 vertices, named, from a030f5e:
## [1] V6 V1 V10
# power_centrality #
power_centrality1 <- power_centrality(net1, nodes = V(net1), loops = FALSE,
exponent = 1, rescale = FALSE, tol = 1e-07, sparse = TRUE)
graf.sym1 <- as.undirected(net1, mode = "collapse",
edge.attr.comb = list(weight = "sum", "ignore"))
cliques(as.undirected(net1))
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## [1] V14
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## [1] V26
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##
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##
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##
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##
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##
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##
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##
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##
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##
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##
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##
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##
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##
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##
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##
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##
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##
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##
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##
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##
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##
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##
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##
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largest.cliques(as.undirected(net1))
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##
## [[2]]
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##
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##
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##
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##
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##
## [[7]]
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##
## [[8]]
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##
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##
## [[10]]
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##
## [[11]]
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##
## [[12]]
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max_cliques(as.undirected(net1))
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##
## [[2]]
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##
## [[3]]
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##
## [[4]]
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##
## [[5]]
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##
## [[6]]
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##
## [[7]]
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##
## [[8]]
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##
## [[9]]
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##
## [[10]]
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##
## [[11]]
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##
## [[12]]
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##
## [[13]]
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##
## [[14]]
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## [1] V52 V11
##
## [[15]]
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## [1] V52 V10
##
## [[16]]
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##
## [[17]]
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##
## [[18]]
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##
## [[19]]
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##
## [[20]]
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##
## [[21]]
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##
## [[22]]
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##
## [[23]]
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##
## [[24]]
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## [1] V29 V8 V6
##
## [[25]]
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## [1] V29 V8 V42 V19
##
## [[26]]
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## [1] V29 V8 V42 V49
##
## [[27]]
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## [1] V28 V19 V10 V13
##
## [[28]]
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## [1] V28 V19 V10 V35
##
## [[29]]
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##
## [[30]]
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count_max_cliques(as.undirected(net1))
## [1] 161
vcol <- rep("grey80", vcount(as.undirected(net1)))
vcol[unlist(largest.cliques(as.undirected(net1)))] = "gold"
plot(as.undirected(as.undirected(net1)), vertex.label = V(graf.sym1)$Vinicola, vertex.color = vcol)
# Visualização dos grafos no R
plot(net1, vertex.color = rainbow(56),
vertex.size = 30,
edge.arrow.size = 0.1,
layout = layout.kamada.kawai, vertex.label.color = "black", vertex.label.cex = 1,
main = "Network")
# Tamanho dos nós igual baseado no degree
plot(net1, vertex.color = rainbow(56),
vertex.size = grauTotal1,
edge.arrow.size = 0.01,
layout = layout.kamada.kawai, vertex.label.color = "black", vertex.label.cex = 1,
main = "Network")
# Colocar a largura da aresta baseada no peso
E(net1)$width <- E(net1)$Peso
plot(net1, vertex.color =rainbow(56),
vertex.size = grauTotal1,
edge.arrow.size = 0.1,
layout = layout.kamada.kawai,
vertex.label.color = "black", vertex.label.cex = 1,
main = "Network")
# Por municípios #
E(net1)$width <- E(net1)$Peso
plot(net1, vertex.color = V(net1)[Cod_mun],
vertex.label = V(net1)$Vinicola,
vertex.size = grauTotal1,
edge.arrow.size = 0.1,
layout = layout.kamada.kawai,
vertex.label.color = "black", vertex.label.cex = 1,
main = "Network")
# Salvar a rede p/ o igraph
# Aqui eu peguei os vetores que eu criei de cada métrica de SNA e concatenei na base de dados original, deixei em comentário pois não precisamos rodar
#write.graph(graph = net1, file = "net1.gml", format = "gml")
#library(foreign)
#dados<- read.spss("C:/Users/user/Desktop/R/SNA/Netwine/SNA/Dados/dados_sna.sav")
#attach(dados)
#library(tibble)
#dados <- as_tibble(dados)
#dadosSNA1 <- cbind(autoridade1, betweenness1, blok1, Burtconstraint, centr_clo1, centr_eigen1, closeness1, eccentricity1, ego_size1, eigen_centrality1, grauIn1, grauOut1, grauTotal1, hub1, power_centrality1, strength1, transitividadeLocal1)
#dados2 <- cbind(dados, dadosSNA1)
#dados2$blok1 <- factor(dados2$blok1, labels = c("Periferia", "Centro"), levels = 1:2)
#library(haven)
#write_sav(dados2, "net1.sav")
library(FactoMineR)
library(foreign)
dados<- read.spss("C:/Users/user/Desktop/R/SNA/Netwine/Recebeu inf tec/net1.sav")
attach(dados)
library(tibble)
dados <- as_tibble(dados)
dados[dados == 9999] <- NA
dados <- dados[-c(38,41,43,44,45,48,49,50,51,52),] # removendo as vinícolas que não responderam
dadosMCAnet1 <- dados[,c(4,10,11,22,23,24,25,26,27,28,29,30,31,32,33,34,52)]
summary(dadosMCAnet1)
## Producao_cat_fino A9 A11 B41A
## Baixa:11 Sem_DO/IG:30 Atendimento_ao_turista:39 Não_clones:20
## Média:12 Com_DO/IG:16 Não_Pretende : 6 Sim_clones:26
## Alta :23 Não_turista : 1
## B41B B41C B41D
## Não_irrigação:41 Não_sistema_treinamento:13 Não_fermentação:21
## Sim_irrigação: 5 Sim_sistema_treinamento:33 Sim_fermentação:25
##
## B41E B41F
## Não_enzima/levedura : 9 Não_envelhecimento:20
## Sim__enzima/levedura:37 Sim_envelhecimento:26
##
## B41G B41H B41I
## Não_recipientes_envelhecimento :26 Não_cortes:17 Não_embalagem: 3
## Sim__recipientes_envelhecimento:20 Sim_cortes:29 Sim_embalagem:43
##
## B41J B41K B41L
## Não_divulgação: 9 Não_canais_vendas:12 Não_estratégias_preços:16
## Sim_divulgação:37 Sim_canais_venda :34 Sim_estratégias_preço :30
##
## B41M blok1
## Não_premiações: 9 Periferia:20
## Sim_premiações:37 Centro :26
##
# Manuseio da base de dados
colnames(dadosMCAnet1) <- c("Produção", "DO/IG", "Turismo", "Clones",
"Irrigação", "Treinamento", "Fermentação", "Enzima/Levedura",
"Envelhecimento", "Recipiente", "Corte", "Embalagem",
"Divulgação", "Vendas", "Preço", "Premiação", "Position")
dadosMCAnet1$Produção <- factor(dadosMCAnet1$Produção, labels = c("S_P", "M_P", "B_P")) # S_P = Small Production; M_P = Medium Production, B_P = Big Production
dadosMCAnet1$`DO/IG` <- factor(dadosMCAnet1$`DO/IG`, labels = c("N_GI", "Y_GI")) # N_GI = No Geographic Indication; Y_GI = Yes Geographic Indication
dadosMCAnet1$Turismo <- factor(dadosMCAnet1$Turismo, labels = c("Y_T", "NI_T", "N_T")) # Y_T = Yes Tourism; NI_T = No but intend to have tourism; N_T = No tourism
dadosMCAnet1$Clones <- factor(dadosMCAnet1$Clones, labels = c("N_Clon", "Y_Clon")) # N_Clon = No Clones; Y_Clon = Yes Clones
dadosMCAnet1$Irrigação <- factor(dadosMCAnet1$Irrigação, labels = c("N_Irrig", "Y_Irrig")) # No Irrigation; Y_Irrig = Yes Irrigation
dadosMCAnet1$Treinamento <- factor(dadosMCAnet1$Treinamento, labels = c("N_Train", "Y_Train")) # N_Train = No Training; Y_Train = Yes Training
dadosMCAnet1$Fermentação <- factor(dadosMCAnet1$Fermentação, labels = c("N_Ferm", "Y_Ferm")) # N_Ferm = No Fermentation; Y_Ferm = Yes Fermentation
dadosMCAnet1$`Enzima/Levedura` <- factor(dadosMCAnet1$`Enzima/Levedura`, labels = c("N_Enz", "Y_Enz")) # N_Enz = No Enzyme; Y_Enz = Yes Enzyme
dadosMCAnet1$Corte <- factor(dadosMCAnet1$Corte, labels = c("N_Cut", "Y_Cut")) # N_Cut = No Cut; Y_Cut = Yes Cut
dadosMCAnet1$Envelhecimento <- factor(dadosMCAnet1$Envelhecimento, labels = c("N_Aging", "Y_Aging")) # N_Aging = No Aging; Y_Aging = Yes Aging
dadosMCAnet1$Recipiente <- factor(dadosMCAnet1$Recipiente, labels = c("N_Vess", "Y_Vess")) # N_Vess = No Vessel; Y_Vess = Yes Vessel
dadosMCAnet1$Embalagem <- factor(dadosMCAnet1$Embalagem, labels = c("N_Pack", "Y_Pack")) # N_Pack = No Packing; Y_Pack = Yes Packing
dadosMCAnet1$Divulgação <- factor(dadosMCAnet1$Divulgação, labels = c("N_Div", "Y_Div")) # N_Div = No Divulgation; Y_Div = Yes Divulgation
dadosMCAnet1$Vendas <- factor(dadosMCAnet1$Vendas, labels = c("N_Sal", "Y_Sal")) # N_Sal = No Sales; Y_Sal = Yes Sales
dadosMCAnet1$Preço <- factor(dadosMCAnet1$Preço, labels = c("N_Pric", "Y_Pric")) # N_Pric = No Prices; Y_Pric = Yes Prices
dadosMCAnet1$Premiação <- factor(dadosMCAnet1$Premiação, labels = c("N_Award", "Y_Award")) # N_Award = No Awards; Y_Award = Yes Awards
dadosMCAnet1$Position <- factor(dadosMCAnet1$Position, labels = c("Periphery", "Center")) # Perip = Periphery; Center = Center
# Questões de 22 a 34: Atividades de inovação - categoria ativa
# Questões 4,8,10,11 e 52: Características das vinícolas - categoria suplementar
# Questão
# Variáveis suplementarias não são utilizadas para formar os constructos, mas sim para interpretá-los
res.MCA <- MCA(dadosMCAnet1, quali.sup=c(1,2,3,17),graph=FALSE,
method = "Burt", ncp = 5)
par(mar = c(0,0,0,0))
plot.MCA(res.MCA, choix='var',col.quali.sup='#006400')
plot.MCA(res.MCA, choix='var', invisible = c("quali.sup", "quanti.sup"))
plot.MCA(res.MCA,col.quali.sup='#006400',label =c('ind','var','quali.sup'), xlim = c(-0.8,1.5), ylim = c(-0.5,1.5))
plot.MCA(res.MCA,col.quali.sup='#006400',label =c('ind','var','quali.sup'), xlim = c(-0.5,1.1), ylim = c(-0.3,1.4), invisible = c("ind"))
plot.MCA(res.MCA,col.quali.sup='#006400',label =c('ind','var','quali.sup'), xlim = c(-0.5,1.1), ylim = c(-0.3,0.9), invisible = c("quali.sup", "ind"))
plot.MCA(res.MCA,col.quali.sup='#006400',label =c('ind','var','quali.sup'), xlim = c(-0.3,1), ylim = c(-0.5,1.4), invisible = c("var", "ind"))
summary(res.MCA, nbelements = Inf)
##
## Call:
## MCA(X = dadosMCAnet1, ncp = 5, quali.sup = c(1, 2, 3, 17), graph = FALSE,
## method = "Burt")
##
##
## Eigenvalues
## Dim.1 Dim.2 Dim.3 Dim.4 Dim.5 Dim.6 Dim.7
## Variance 0.064 0.021 0.013 0.008 0.007 0.005 0.003
## % of var. 50.157 16.354 10.469 5.969 5.582 3.601 2.682
## Cumulative % of var. 50.157 66.511 76.980 82.949 88.532 92.133 94.815
## Dim.8 Dim.9 Dim.10 Dim.11 Dim.12 Dim.13
## Variance 0.002 0.002 0.001 0.001 0.000 0.000
## % of var. 1.762 1.427 0.890 0.516 0.343 0.246
## Cumulative % of var. 96.577 98.004 98.895 99.411 99.754 100.000
##
## Individuals
## Dim.1 ctr cos2 Dim.2 ctr cos2 Dim.3 ctr cos2
## 1 | -0.722 4.471 0.655 | 0.151 0.344 0.029 | -0.133 0.331 0.022
## 2 | 0.592 3.010 0.352 | -0.299 1.341 0.089 | -0.387 2.821 0.151
## 3 | -0.471 1.908 0.381 | 0.028 0.012 0.001 | -0.082 0.128 0.012
## 4 | -0.412 1.459 0.372 | -0.251 0.950 0.138 | -0.205 0.786 0.092
## 5 | -0.297 0.755 0.083 | 0.297 1.323 0.083 | -0.287 1.544 0.077
## 6 | -0.412 1.459 0.372 | -0.251 0.950 0.138 | -0.205 0.786 0.092
## 7 | 0.465 1.860 0.195 | -0.153 0.354 0.021 | 0.840 13.245 0.633
## 8 | 0.408 1.430 0.165 | 0.067 0.067 0.004 | -0.038 0.027 0.001
## 9 | 0.120 0.124 0.021 | -0.290 1.267 0.123 | -0.115 0.249 0.019
## 10 | -0.337 0.976 0.186 | -0.034 0.018 0.002 | 0.151 0.429 0.037
## 11 | -0.238 0.486 0.088 | -0.080 0.097 0.010 | -0.313 1.844 0.153
## 12 | -0.554 2.634 0.274 | 0.266 1.066 0.063 | 0.570 6.113 0.291
## 13 | 0.084 0.060 0.008 | -0.210 0.664 0.049 | 0.756 10.731 0.629
## 14 | 0.506 2.194 0.297 | -0.471 3.337 0.258 | -0.168 0.528 0.033
## 15 | 0.236 0.476 0.069 | -0.254 0.970 0.081 | 0.009 0.001 0.000
## 16 | 0.556 2.651 0.238 | 0.317 1.509 0.077 | -0.551 5.702 0.234
## 17 | 0.505 2.188 0.306 | -0.385 2.224 0.178 | 0.069 0.090 0.006
## 18 | 0.756 4.905 0.446 | 0.003 0.000 0.000 | -0.326 1.998 0.083
## 19 | 0.465 1.860 0.195 | -0.153 0.354 0.021 | 0.840 13.245 0.633
## 20 | 0.433 1.609 0.127 | 0.181 0.491 0.022 | -0.076 0.107 0.004
## 21 | -0.397 1.352 0.202 | -0.101 0.153 0.013 | 0.112 0.235 0.016
## 22 | -0.603 3.119 0.730 | -0.061 0.057 0.008 | -0.215 0.873 0.093
## 23 | -0.442 1.678 0.363 | -0.115 0.199 0.025 | -0.145 0.398 0.039
## 24 | -0.561 2.702 0.377 | 0.097 0.143 0.011 | -0.063 0.074 0.005
## 25 | 0.991 8.431 0.287 | 1.348 27.318 0.531 | 0.108 0.217 0.003
## 26 | 0.006 0.000 0.000 | -0.390 2.290 0.221 | -0.304 1.732 0.134
## 27 | 0.415 1.480 0.228 | -0.406 2.479 0.219 | 0.189 0.668 0.047
## 28 | 0.080 0.055 0.011 | -0.530 4.224 0.497 | 0.223 0.937 0.088
## 29 | -0.238 0.486 0.066 | -0.109 0.180 0.014 | 0.612 7.033 0.434
## 30 | 1.377 16.289 0.757 | 0.334 1.681 0.045 | -0.237 1.057 0.022
## 31 | 0.080 0.055 0.011 | -0.530 4.224 0.497 | 0.223 0.937 0.088
## 32 | 0.145 0.180 0.025 | -0.103 0.161 0.013 | -0.462 4.019 0.256
## 33 | -0.468 1.884 0.418 | -0.123 0.229 0.029 | 0.018 0.006 0.001
## 34 | 0.198 0.335 0.042 | -0.143 0.310 0.022 | -0.231 1.000 0.057
## 35 | 0.077 0.051 0.009 | -0.379 2.159 0.230 | 0.123 0.283 0.024
## 36 | -0.399 1.367 0.076 | 1.211 22.039 0.699 | 0.378 2.684 0.068
## 37 | -0.603 3.119 0.730 | -0.061 0.057 0.008 | -0.215 0.873 0.093
## 38 | -0.435 1.625 0.230 | 0.054 0.043 0.003 | 0.488 4.468 0.289
## 39 | -0.603 3.119 0.730 | -0.061 0.057 0.008 | -0.215 0.873 0.093
## 40 | -0.412 1.459 0.372 | -0.251 0.950 0.138 | -0.205 0.786 0.092
## 41 | 0.416 1.488 0.117 | 0.156 0.366 0.016 | 0.521 5.099 0.182
## 42 | -0.754 4.879 0.401 | 0.635 6.061 0.285 | -0.122 0.281 0.011
## 43 | 0.083 0.060 0.007 | 0.319 1.525 0.099 | -0.282 1.499 0.078
## 44 | 0.324 0.903 0.065 | 0.436 2.857 0.117 | -0.088 0.147 0.005
## 45 | -0.635 3.461 0.360 | 0.422 2.681 0.159 | -0.205 0.790 0.038
## 46 | 0.674 3.906 0.237 | -0.121 0.221 0.008 | -0.352 2.327 0.065
##
## 1 |
## 2 |
## 3 |
## 4 |
## 5 |
## 6 |
## 7 |
## 8 |
## 9 |
## 10 |
## 11 |
## 12 |
## 13 |
## 14 |
## 15 |
## 16 |
## 17 |
## 18 |
## 19 |
## 20 |
## 21 |
## 22 |
## 23 |
## 24 |
## 25 |
## 26 |
## 27 |
## 28 |
## 29 |
## 30 |
## 31 |
## 32 |
## 33 |
## 34 |
## 35 |
## 36 |
## 37 |
## 38 |
## 39 |
## 40 |
## 41 |
## 42 |
## 43 |
## 44 |
## 45 |
## 46 |
##
## Categories
## Dim.1 ctr cos2 v.test Dim.2 ctr cos2 v.test Dim.3
## N_Clon | 0.299 4.660 0.576 1.758 | -0.057 0.522 0.021 -0.336 | 0.060
## Y_Clon | -0.230 3.584 0.576 -1.758 | 0.044 0.402 0.021 0.336 | -0.046
## N_Irrig | 0.012 0.014 0.010 0.221 | -0.099 3.203 0.756 -1.898 | -0.002
## Y_Irrig | -0.095 0.117 0.010 -0.221 | 0.810 26.263 0.756 1.898 | 0.014
## N_Train | 0.522 9.229 0.722 2.197 | 0.149 2.310 0.059 0.628 | 0.015
## Y_Train | -0.206 3.635 0.722 -2.197 | -0.059 0.910 0.059 -0.628 | -0.006
## N_Ferm | 0.240 3.163 0.417 1.477 | -0.063 0.673 0.029 -0.389 | 0.191
## Y_Ferm | -0.202 2.657 0.417 -1.477 | 0.053 0.566 0.029 0.389 | -0.160
## N_Enz | 0.088 0.184 0.018 0.293 | 0.268 5.154 0.165 0.885 | 0.568
## Y_Enz | -0.022 0.045 0.018 -0.293 | -0.065 1.254 0.165 -0.885 | -0.138
## N_Aging | 0.367 7.019 0.670 2.158 | -0.173 4.791 0.149 -1.018 | 0.106
## Y_Aging | -0.282 5.400 0.670 -2.158 | 0.133 3.686 0.149 1.018 | -0.081
## N_Vess | 0.273 5.039 0.653 2.085 | -0.155 5.015 0.212 -1.188 | 0.007
## Y_Vess | -0.354 6.550 0.653 -2.085 | 0.202 6.520 0.212 1.188 | -0.009
## N_Cut | 0.272 3.291 0.389 1.399 | 0.106 1.515 0.058 0.542 | 0.126
## Y_Cut | -0.160 1.929 0.389 -1.399 | -0.062 0.888 0.058 -0.542 | -0.074
## N_Pack | 1.014 8.050 0.555 1.797 | 0.520 6.498 0.146 0.922 | -0.161
## Y_Pack | -0.071 0.562 0.555 -1.797 | -0.036 0.453 0.146 -0.922 | 0.011
## N_Div | 0.503 5.945 0.458 1.665 | 0.468 15.785 0.396 1.549 | -0.124
## Y_Div | -0.122 1.446 0.458 -1.665 | -0.114 3.840 0.396 -1.549 | 0.030
## N_Sal | 0.539 9.096 0.704 2.148 | 0.033 0.107 0.003 0.133 | -0.248
## Y_Sal | -0.190 3.210 0.704 -2.148 | -0.012 0.038 0.003 -0.133 | 0.088
## N_Pric | 0.438 8.011 0.721 2.146 | 0.043 0.234 0.007 0.209 | -0.165
## Y_Pric | -0.234 4.272 0.721 -2.146 | -0.023 0.125 0.007 -0.209 | 0.088
## N_Award | -0.315 2.327 0.240 -1.042 | 0.321 7.440 0.250 1.064 | 0.100
## Y_Award | 0.077 0.566 0.240 1.042 | -0.078 1.810 0.250 -1.064 | -0.024
## ctr cos2 v.test
## N_Clon 0.885 0.023 0.350 |
## Y_Clon 0.681 0.023 -0.350 |
## N_Irrig 0.001 0.000 -0.033 |
## Y_Irrig 0.012 0.000 0.033 |
## N_Train 0.036 0.001 0.063 |
## Y_Train 0.014 0.001 -0.063 |
## N_Ferm 9.569 0.264 1.174 |
## Y_Ferm 8.038 0.264 -1.174 |
## N_Enz 36.264 0.744 1.879 |
## Y_Enz 8.821 0.744 -1.879 |
## N_Aging 2.784 0.055 0.621 |
## Y_Aging 2.141 0.055 -0.621 |
## N_Vess 0.017 0.000 0.055 |
## Y_Vess 0.022 0.000 -0.055 |
## N_Cut 3.378 0.083 0.648 |
## Y_Cut 1.980 0.083 -0.648 |
## N_Pack 0.966 0.014 -0.284 |
## Y_Pack 0.067 0.014 0.284 |
## N_Div 1.719 0.028 -0.409 |
## Y_Div 0.418 0.028 0.409 |
## N_Sal 9.228 0.149 -0.989 |
## Y_Sal 3.257 0.149 0.989 |
## N_Pric 5.412 0.102 -0.806 |
## Y_Pric 2.887 0.102 0.806 |
## N_Award 1.127 0.024 0.331 |
## Y_Award 0.274 0.024 -0.331 |
##
## Categorical variables (eta2)
## Dim.1 Dim.2 Dim.3
## Clones | 0.271 0.017 0.024 |
## Irrigação | 0.004 0.554 0.000 |
## Treinamento | 0.423 0.061 0.001 |
## Fermentação | 0.192 0.023 0.265 |
## Enzima/Levedura | 0.008 0.120 0.678 |
## Envelhecimento | 0.409 0.159 0.074 |
## Recipiente | 0.381 0.217 0.001 |
## Corte | 0.172 0.045 0.081 |
## Embalagem | 0.283 0.131 0.016 |
## Divulgação | 0.243 0.369 0.032 |
## Vendas | 0.405 0.003 0.188 |
## Preço | 0.404 0.007 0.125 |
## Premiação | 0.095 0.174 0.021 |
##
## Supplementary categories
## Dim.1 cos2 v.test Dim.2 cos2 v.test Dim.3 cos2 v.test
## S_P | 0.047 0.043 0.177 | -0.129 0.321 -0.483 | -0.054 0.057 -0.205
## M_P | 0.060 0.046 0.238 | 0.166 0.354 0.660 | 0.027 0.009 0.106
## B_P | -0.054 0.210 -0.360 | -0.025 0.045 -0.167 | 0.012 0.011 0.081
## N_GI | 0.075 0.537 0.693 | 0.013 0.016 0.120 | 0.025 0.060 0.231
## Y_GI | -0.142 0.537 -0.693 | -0.025 0.016 -0.120 | -0.047 0.060 -0.231
## Y_T | -0.028 0.197 -0.436 | -0.007 0.013 -0.110 | -0.040 0.421 -0.637
## NI_T | 0.014 0.001 0.035 | -0.180 0.227 -0.467 | 0.243 0.417 0.632
## N_T | 0.991 0.287 0.991 | 1.348 0.531 1.348 | 0.108 0.003 0.108
## Periphery | 0.015 0.016 0.090 | 0.009 0.005 0.052 | 0.084 0.501 0.496
## Center | -0.012 0.016 -0.090 | -0.007 0.005 -0.052 | -0.065 0.501 -0.496
##
## S_P |
## M_P |
## B_P |
## N_GI |
## Y_GI |
## Y_T |
## NI_T |
## N_T |
## Periphery |
## Center |
##
## Supplementary categorical variables (eta2)
## Dim.1 Dim.2 Dim.3
## Produção | 0.011 0.079 0.008 |
## DO/IG | 0.042 0.002 0.010 |
## Turismo | 0.087 0.303 0.081 |
## Position | 0.001 0.000 0.047 |
dimdesc(res.MCA)$`Dim 1`$quali
## R2 p.value
## Treinamento 0.4234564 9.785803e-07
## Envelhecimento 0.4088119 1.726609e-06
## Vendas 0.4050878 1.990645e-06
## Preço 0.4043304 2.048893e-06
## Recipiente 0.3814889 4.813458e-06
## Embalagem 0.2834665 1.397548e-04
## Clones 0.2713786 2.058163e-04
## Divulgação 0.2433178 4.955450e-04
## Fermentação 0.1915557 2.351758e-03
## Corte 0.1718386 4.180220e-03
## Premiação 0.0952447 3.690798e-02
dimdesc(res.MCA)$`Dim 2`$quali
## R2 p.value
## Irrigação 0.5538650 3.068959e-09
## Divulgação 0.3688706 7.620669e-06
## Turismo 0.3025613 4.318973e-04
## Recipiente 0.2168112 1.110404e-03
## Premiação 0.1738571 3.942686e-03
## Envelhecimento 0.1593405 5.994397e-03
## Embalagem 0.1306537 1.358096e-02
## Enzima/Levedura 0.1204545 1.812238e-02
dimdesc(res.MCA)$`Dim 3`$quali
## R2 p.value
## Enzima/Levedura 0.6780548 2.132750e-12
## Fermentação 0.2647840 2.536412e-04
## Vendas 0.1877561 2.629218e-03
## Preço 0.1248095 1.602374e-02
res.MCA$var$v.test
## Dim 1 Dim 2 Dim 3 Dim 4 Dim 5
## N_Clon 1.7584869 -0.3360890 0.35021181 -0.260839245 -0.9080786
## Y_Clon -1.7584869 0.3360890 -0.35021181 0.260839245 0.9080786
## N_Irrig 0.2214264 -1.8983554 -0.03265782 -0.156764963 0.1975460
## Y_Irrig -0.2214264 1.8983554 0.03265782 0.156764963 -0.1975460
## N_Train 2.1966239 0.6275699 0.06287002 0.876071045 -0.5482604
## Y_Train -2.1966239 -0.6275699 -0.06287002 -0.876071045 0.5482604
## N_Ferm 1.4774028 -0.3892665 1.17407144 0.031479032 1.0302838
## Y_Ferm -1.4774028 0.3892665 -1.17407144 -0.031479032 -1.0302838
## N_Enz 0.2927332 0.8852931 1.87880218 0.000134767 0.1768150
## Y_Enz -0.2927332 -0.8852931 -1.87880218 -0.000134767 -0.1768150
## N_Aging 2.1583066 -1.0182130 0.62096699 0.701508267 -0.1895100
## Y_Aging -2.1583066 1.0182130 -0.62096699 -0.701508267 0.1895100
## N_Vess 2.0849339 -1.1877263 0.05460176 0.211194044 -0.2226636
## Y_Vess -2.0849339 1.1877263 -0.05460176 -0.211194044 0.2226636
## N_Cut 1.3993027 0.5421602 0.64773631 -1.279341965 -0.4719008
## Y_Cut -1.3993027 -0.5421602 -0.64773631 1.279341965 0.4719008
## N_Pack 1.7972240 0.9220115 -0.28441225 -0.242188341 1.0445596
## Y_Pack -1.7972240 -0.9220115 0.28441225 0.242188341 -1.0445596
## N_Div 1.6650922 1.5492180 -0.40911001 -0.067616519 -0.1769743
## Y_Div -1.6650922 -1.5492180 0.40911001 0.067616519 0.1769743
## N_Sal 2.1484534 0.1330158 -0.98865698 0.385674716 0.6152267
## Y_Sal -2.1484534 -0.1330158 0.98865698 -0.385674716 -0.6152267
## N_Pric 2.1464439 0.2094848 -0.80606936 -0.395773373 -0.2104035
## Y_Pric -2.1464439 -0.2094848 0.80606936 0.395773373 0.2104035
## N_Award -1.0417698 1.0635839 0.33127316 1.029982119 -0.2537185
## Y_Award 1.0417698 -1.0635839 -0.33127316 -1.029982119 0.2537185
res.MCA$quali.sup
## $coord
## Dim 1 Dim 2 Dim 3 Dim 4 Dim 5
## S_P 0.04707117 -0.128551125 -0.05439365 -0.03922454 -0.140099795
## M_P 0.05963098 0.165661435 0.02668757 -0.09767592 0.138899748
## B_P -0.05362412 -0.024951080 0.01209040 0.06972091 -0.005465184
## N_GI 0.07548653 0.013083872 0.02518527 0.01223494 0.031208793
## Y_GI -0.14153724 -0.024532261 -0.04722238 -0.02294050 -0.058516487
## Y_T -0.02750638 -0.006929217 -0.04020504 0.02848823 0.009824839
## NI_T 0.01362497 -0.179616257 0.24340843 -0.13266951 -0.138072124
## N_T 0.99099913 1.347936996 0.10754588 -0.31502398 0.445264039
## Periphery 0.01527398 0.008802058 0.08433351 0.03618467 -0.005853066
## Center -0.01174921 -0.006770814 -0.06487193 -0.02783436 0.004502359
##
## $cos2
## Dim 1 Dim 2 Dim 3 Dim 4 Dim 5
## S_P 0.043002165 0.320724447 0.057421786 0.02986043 0.380938878
## M_P 0.045843295 0.353813744 0.009182267 0.12300050 0.248733782
## B_P 0.210081758 0.045482752 0.010679470 0.35513556 0.002182115
## N_GI 0.537305249 0.016141905 0.059810212 0.01411515 0.091840901
## Y_GI 0.537305249 0.016141905 0.059810212 0.01411515 0.091840901
## Y_T 0.197053364 0.012505043 0.420995859 0.21137220 0.025140142
## NI_T 0.001306691 0.227087531 0.417035704 0.12389228 0.134188103
## N_T 0.286827484 0.530656395 0.003378017 0.02898421 0.057904119
## Periphery 0.016420869 0.005453312 0.500601652 0.09215970 0.002411342
## Center 0.016420869 0.005453312 0.500601652 0.09215970 0.002411342
##
## $v.test
## Dim 1 Dim 2 Dim 3 Dim 4 Dim 5
## S_P 0.17702051 -0.48344209 -0.2045581 -0.1475117 -0.52687316
## M_P 0.23764539 0.66020505 0.1063571 -0.3892646 0.55355258
## B_P -0.35972152 -0.16737694 0.0811049 0.4677021 -0.03666157
## N_GI 0.69338803 0.12018304 0.2313415 0.1123851 0.28667107
## Y_GI -0.69338803 -0.12018304 -0.2313415 -0.1123851 -0.28667107
## Y_T -0.43553497 -0.10971694 -0.6366050 0.4510815 0.15556610
## NI_T 0.03539871 -0.46665672 0.6323937 -0.3446855 -0.35872190
## N_T 0.99099913 1.34793700 0.1075459 -0.3150240 0.44526404
## Periphery 0.08986420 0.05178677 0.4961749 0.2128919 -0.03443642
## Center -0.08986420 -0.05178677 -0.4961749 -0.2128919 0.03443642
##
## $eta2
## Dim 1 Dim 2 Dim 3 Dim 4 Dim 5
## Produção 0.0114338502 0.0789973261 0.008353526 0.060526677 0.1153168934
## DO/IG 0.0421939310 0.0022199097 0.010280390 0.003213069 0.0216181877
## Turismo 0.0869426845 0.3025612592 0.080820250 0.058855454 0.0814242630
## Position 0.0007087135 0.0004121796 0.047290315 0.011529785 0.0003119519
library(factoextra)
fviz_contrib(res.MCA, choice = "var", axes = 1, top = 15)
fviz_contrib(res.MCA, choice = "var", axes = , top = 15)
fviz_contrib(res.MCA, choice = "var", axes = 3, top = 15)
g1 <- plot.MCA(res.MCA,col.quali.sup='#006400',
label =c('var','quali.sup'),
title = "1 MCA Factor Map",
col.ind = "blue",
cex = 0.85)
g1
g2 <- plot.MCA(res.MCA, col.var=c("#1E5AAB", "#1E5AAB", "red", "red", "#720012", "#720012", "purple", "purple", "black", "black", "#CDA4DE", "#CDA4DE", "darkgray", "darkgray", "#897D62", "#897D62", "orange", "orange", "#901F76", "#901F76",
"#720012", "#720012", "#469BC3", "#469BC3", "#D05098", "#D05098"),
label =c("var"),
invisible = c("ind"),
title = "2 MCA Categories",
cex = 0.85)
g2
g3 <- plot.MCA(res.MCA,col.quali.sup= c("#1E5AAB", "#1E5AAB", "#1E5AAB", "black", "black", "darkgreen", "darkgreen", "darkgreen", "purple", "purple"),
label =c("quali.sup"),
invisible = c("ind"),
title = "3 MCA Supplementary Categories",
cex = 1)
g3
g4 <- plotellipses(res.MCA, keepvar = c(17),
title = "4 Confidence Ellipses Around the Categories of Position",
level = 0.95)
g4
library(gridExtra)
grid.arrange(g1, g2, ncol = 2)
grid.arrange(g3, g4, ncol = 2)
library(car)
library(effsize)
library(rcompanion)
# Mann #
aggregate(dados$grauTotal1 ~ dados$blok1, data = dados, FUN = mean)
## dados$blok1 dados$grauTotal1
## 1 Periferia 5.95000
## 2 Centro 19.03846
wilcox.test(dados$grauTotal1 ~ dados$blok1, conf.int = T, exact = F) # W = 19.5, p-value = 1.01e-07
##
## Wilcoxon rank sum test with continuity correction
##
## data: dados$grauTotal1 by dados$blok1
## W = 19.5, p-value = 1.01e-07
## alternative hypothesis: true location shift is not equal to 0
## 95 percent confidence interval:
## -15.999985 -8.000047
## sample estimates:
## difference in location
## -11.00007
wilcoxonR(x = dados$grauTotal1, g = dados$blok1) # -0.787 Efeito grande
## r
## -0.787
# Teste T #
aggregate(Fator_inovação ~ blok1, data = dados, FUN = mean) # Média do centro é maior
## blok1 Fator_inovação
## 1 Periferia -0.1825548
## 2 Centro 0.1404268
leveneTest(dados$Fator_inovação ~ dados$blok1, data = dados, center = median) ## Teste de Brown-Forsythe para homogeneidade de variâncias
## Levene's Test for Homogeneity of Variance (center = median)
## Df F value Pr(>F)
## group 1 0.2721 0.6045
## 44
t.test(dados$Fator_inovação ~ dados$blok1, paired = F, conf.level = 0.95, var.eq = T) # t = -1.2391, df = 44, p-value = 0.2219
##
## Two Sample t-test
##
## data: dados$Fator_inovação by dados$blok1
## t = -1.2391, df = 44, p-value = 0.2219
## alternative hypothesis: true difference in means is not equal to 0
## 95 percent confidence interval:
## -0.8482843 0.2023211
## sample estimates:
## mean in group Periferia mean in group Centro
## -0.1825548 0.1404268
cohen.d(dados$Fator_inovação ~ dados$blok1, data = dados, paired = F) # -0.3685528 (small)
##
## Cohen's d
##
## d estimate: -0.3685528 (small)
## 95 percent confidence interval:
## lower upper
## -0.9729546 0.2358491
library(foreign)
dados<- read.spss("C:/Users/user/Desktop/R/SNA/Netwine/Recebeu inf tec/net1.sav")
library(tibble)
dados <- as_tibble(dados)
dados <- dados[,c(49:66)]
dados$blok1 <- NULL
dados2 <- dados[-c(38,41,43,44,45,48,49,50,51,52),]
dados2[is.na(dados2)] <- 0
dados2 <- dados2[,-c(4,5,6,16)] # Removendo as métricas idênticas ou desnecessárias para o artigo
# Normalidade
shapiro.test(dados2$Fator_inovação) # VD normal
##
## Shapiro-Wilk normality test
##
## data: dados2$Fator_inovação
## W = 0.97156, p-value = 0.3162
hist(dados2$Fator_inovação)
# Correlações
cor <- cor(dados2)[,1]
sort(cor, decreasing = T)
## Fator_inovação eigen_centrality1 autoridade1
## 1.000000000 0.467601401 0.451670747
## grauIn1 power_centrality1 closeness1
## 0.379023359 0.296152140 0.224020155
## grauTotal1 ego_size1 transitividadeLocal1
## 0.182987819 0.181157803 0.132731767
## betweenness1 hub1 grauOut1
## 0.104547899 -0.008942165 -0.031683734
## eccentricity1
## -0.094521207
# Escalonamento
dados2 <- as.data.frame(scale(dados2))
boxplot(dados2$Fator_inovação) # Sem Outliers
dadosBoruta <- dados2
colnames(dadosBoruta) <- c("Innovation Activity", "Authority", "Betweenness", "Closeness",
"Eccentricity", "Ego Size", "Eigen Centrality", "In Degree",
"Out Degree", "Total Degree", "Hub", "Power Centrality",
"Local Transtivity")
library(Boruta)
set.seed(1, sample.kind = "Rounding")
boruta <- Boruta(dadosBoruta$`Innovation Activity` ~., data = dadosBoruta, maxRuns = 500,
pValue = 0.01, doTrace = 0, getImp = getImpRfZ)
print(boruta)
## Boruta performed 499 iterations in 7.465027 secs.
## 4 attributes confirmed important: `Eigen Centrality`, `In Degree`,
## Authority, Hub;
## 7 attributes confirmed unimportant: `Ego Size`, `Local Transtivity`,
## `Out Degree`, `Power Centrality`, `Total Degree` and 2 more;
## 1 tentative attributes left: Closeness;
par(mar = c(8,5,8,5))
plot(boruta, las = 2, cex.axis = 0.7, xlab = "", main = "")
plotImpHistory(boruta)
#dev.off()
# Concertandos os atributos que não tiveram um diagnóstico claro
attStats(boruta) # Probabilidades
## meanImp medianImp minImp maxImp normHits
## Authority 8.8046021 8.8276025 5.8684706 11.6761256 0.98396794
## Betweenness -0.5873878 -0.5075578 -2.0990512 1.5942978 0.00000000
## Closeness 2.5937354 2.6264147 -1.0747861 6.1301853 0.46693387
## Eccentricity -1.5947177 -1.7302298 -2.5175170 -0.2621905 0.00000000
## `Ego Size` 1.4788326 1.5172165 -0.9300296 3.9026244 0.03206413
## `Eigen Centrality` 7.4306129 7.3909919 4.4522463 11.0690652 0.96392786
## `In Degree` 4.4711996 4.5244641 1.1892580 7.0846117 0.72945892
## `Out Degree` 1.8120523 1.8586048 -0.5942205 4.6084299 0.04208417
## `Total Degree` 1.5428821 1.5777043 -0.2201988 3.0729108 0.01002004
## Hub 3.4664952 3.4041872 -0.2848275 7.7696740 0.60921844
## `Power Centrality` 2.1030030 2.0643331 -0.8085407 4.6704371 0.09418838
## `Local Transtivity` 0.1545756 0.1266351 -1.1102060 1.7679986 0.00000000
## decision
## Authority Confirmed
## Betweenness Rejected
## Closeness Tentative
## Eccentricity Rejected
## `Ego Size` Rejected
## `Eigen Centrality` Confirmed
## `In Degree` Confirmed
## `Out Degree` Rejected
## `Total Degree` Rejected
## Hub Confirmed
## `Power Centrality` Rejected
## `Local Transtivity` Rejected
getNonRejectedFormula(boruta) # Não rejeitados
## dadosBoruta$`Innovation Activity` ~ Authority + Closeness + `Eigen Centrality` +
## `In Degree` + Hub
## <environment: 0x0000000024b68e30>
getConfirmedFormula(boruta) # Confirmados
## dadosBoruta$`Innovation Activity` ~ Authority + `Eigen Centrality` +
## `In Degree` + Hub
## <environment: 0x0000000024aed7c0>
getSelectedAttributes(boruta)
## [1] "Authority" "`Eigen Centrality`" "`In Degree`"
## [4] "Hub"
bor <- TentativeRoughFix(boruta)
print(bor)
## Boruta performed 499 iterations in 7.465027 secs.
## Tentatives roughfixed over the last 499 iterations.
## 5 attributes confirmed important: `Eigen Centrality`, `In Degree`,
## Authority, Closeness, Hub;
## 7 attributes confirmed unimportant: `Ego Size`, `Local Transtivity`,
## `Out Degree`, `Power Centrality`, `Total Degree` and 2 more;
attStats(bor) # Probabilidades
## meanImp medianImp minImp maxImp normHits
## Authority 8.8046021 8.8276025 5.8684706 11.6761256 0.98396794
## Betweenness -0.5873878 -0.5075578 -2.0990512 1.5942978 0.00000000
## Closeness 2.5937354 2.6264147 -1.0747861 6.1301853 0.46693387
## Eccentricity -1.5947177 -1.7302298 -2.5175170 -0.2621905 0.00000000
## `Ego Size` 1.4788326 1.5172165 -0.9300296 3.9026244 0.03206413
## `Eigen Centrality` 7.4306129 7.3909919 4.4522463 11.0690652 0.96392786
## `In Degree` 4.4711996 4.5244641 1.1892580 7.0846117 0.72945892
## `Out Degree` 1.8120523 1.8586048 -0.5942205 4.6084299 0.04208417
## `Total Degree` 1.5428821 1.5777043 -0.2201988 3.0729108 0.01002004
## Hub 3.4664952 3.4041872 -0.2848275 7.7696740 0.60921844
## `Power Centrality` 2.1030030 2.0643331 -0.8085407 4.6704371 0.09418838
## `Local Transtivity` 0.1545756 0.1266351 -1.1102060 1.7679986 0.00000000
## decision
## Authority Confirmed
## Betweenness Rejected
## Closeness Confirmed
## Eccentricity Rejected
## `Ego Size` Rejected
## `Eigen Centrality` Confirmed
## `In Degree` Confirmed
## `Out Degree` Rejected
## `Total Degree` Rejected
## Hub Confirmed
## `Power Centrality` Rejected
## `Local Transtivity` Rejected
getNonRejectedFormula(bor) # Não rejeitados
## dadosBoruta$`Innovation Activity` ~ Authority + Closeness + `Eigen Centrality` +
## `In Degree` + Hub
## <environment: 0x00000000235a7e90>
getConfirmedFormula(bor) # Confirmados
## dadosBoruta$`Innovation Activity` ~ Authority + Closeness + `Eigen Centrality` +
## `In Degree` + Hub
## <environment: 0x0000000023526cb8>
getSelectedAttributes(bor)
## [1] "Authority" "Closeness" "`Eigen Centrality`"
## [4] "`In Degree`" "Hub"
# Regressão de Lasso #
library(caret)
library(DMwR)
set.seed(100, sample.kind = "Rounding")
trainRows <- createDataPartition(dados2$Fator_inovação, p = .7, list = F)
trainData <- dados2[trainRows,]
testData <- dados2[-trainRows,]
custom <- trainControl(method = "LOOCV",
number = 5,
verboseIter = F)
lambda <- 10^seq(-3, 3, length = 100)
set.seed(100, sample.kind = "Rounding")
lasso <- train(Fator_inovação ~.,
trainData,
method = "glmnet",
tuneGrid = expand.grid(alpha = 1,
lambda = lambda),
trControl = custom)
coef(lasso$finalModel, lasso$bestTune$lambda)
## 13 x 1 sparse Matrix of class "dgCMatrix"
## 1
## (Intercept) 0.10793271
## autoridade1 0.30386294
## betweenness1 .
## closeness1 .
## eccentricity1 .
## ego_size1 .
## eigen_centrality1 0.16811145
## grauIn1 .
## grauOut1 -0.20234088
## grauTotal1 .
## hub1 -0.02723877
## power_centrality1 0.02507355
## transitividadeLocal1 .
varImp(lasso)
## glmnet variable importance
##
## Overall
## autoridade1 100.000
## grauOut1 66.590
## eigen_centrality1 55.325
## hub1 8.964
## power_centrality1 8.252
## ego_size1 0.000
## transitividadeLocal1 0.000
## betweenness1 0.000
## eccentricity1 0.000
## grauTotal1 0.000
## grauIn1 0.000
## closeness1 0.000
plot(lasso$finalModel, xvar = "lambda", label = T)
plot(lasso$finalModel, xvar = "dev", label = T)
varImp(lasso$finalModel)
## Overall
## autoridade1 0.30386294
## betweenness1 0.00000000
## closeness1 0.00000000
## eccentricity1 0.00000000
## ego_size1 0.00000000
## eigen_centrality1 0.16811145
## grauIn1 0.00000000
## grauOut1 0.20234088
## grauTotal1 0.00000000
## hub1 0.02723877
## power_centrality1 0.02507355
## transitividadeLocal1 0.00000000
plot(varImp(lasso, scale = F))
# Erro de teste #
pred <- predict(lasso, testData)
regr.eval(testData$Fator_inovação, pred)
## mae mse rmse mape
## 0.8125351 1.0233678 1.0116164 1.5651153
test_y <- as.matrix(testData[, "Fator_inovação"])
data.frame(
RMSE = RMSE(pred, test_y),
Rsquare = R2(pred, test_y),
MAE = MAE(pred, test_y))
## RMSE Rsquare MAE
## 1 1.011616 0.2269016 0.8125351
# Elástica #
library(caret)
library(DMwR)
set.seed(100, sample.kind = "Rounding")
trainRows <- createDataPartition(dados2$Fator_inovação, p = .7, list = F)
trainData <- dados2[trainRows,]
testData <- dados2[-trainRows,]
custom <- trainControl(method = "LOOCV",
number = 5,
verboseIter = F)
lambda <- 10^seq(-3, 3, length = 100)
set.seed(100, sample.kind = "Rounding")
en <- train(Fator_inovação ~.,
trainData,
method = "glmnet",
tuneGrid = expand.grid(alpha = seq(0,1, length = 10),
lambda = lambda),
trControl = custom)
varImp(en)
## glmnet variable importance
##
## Overall
## autoridade1 100.00
## eigen_centrality1 90.23
## hub1 49.25
## grauOut1 39.98
## betweenness1 34.80
## power_centrality1 29.13
## closeness1 21.53
## ego_size1 0.00
## grauIn1 0.00
## transitividadeLocal1 0.00
## grauTotal1 0.00
## eccentricity1 0.00
varImp(en$finalModel)
## Overall
## autoridade1 0.29819659
## betweenness1 0.10378636
## closeness1 0.06419059
## eccentricity1 0.00000000
## ego_size1 0.00000000
## eigen_centrality1 0.26907281
## grauIn1 0.00000000
## grauOut1 0.11922089
## grauTotal1 0.00000000
## hub1 0.14687170
## power_centrality1 0.08686854
## transitividadeLocal1 0.00000000
coef(en$finalModel)
## 13 x 99 sparse Matrix of class "dgCMatrix"
##
## (Intercept) 0.09467213 0.095676591 0.09690796 0.09811495 0.09929302
## autoridade1 . 0.007176203 0.01869378 0.02995832 0.04092475
## betweenness1 . . . . .
## closeness1 . . . . .
## eccentricity1 . . . . .
## ego_size1 . . . . .
## eigen_centrality1 . 0.013615446 0.02541840 0.03703259 0.04841939
## grauIn1 . . . . .
## grauOut1 . . . . .
## grauTotal1 . . . . .
## hub1 . . . . .
## power_centrality1 . . . . .
## transitividadeLocal1 . . . . .
##
## (Intercept) 0.10043811 0.10154660 0.1026397180 0.103737005
## autoridade1 0.05155245 0.06180529 0.0713131003 0.079964541
## betweenness1 . . . .
## closeness1 . . . .
## eccentricity1 . . . .
## ego_size1 . . . .
## eigen_centrality1 0.05954416 0.07037682 0.0807077340 0.090138385
## grauIn1 . . 0.0007411529 0.002799246
## grauOut1 . . . .
## grauTotal1 . . . .
## hub1 . . . .
## power_centrality1 . . . .
## transitividadeLocal1 . . . .
##
## (Intercept) 0.104495167 0.10507594 0.10561227 0.105803146
## autoridade1 0.090790905 0.10343153 0.11611607 0.128885349
## betweenness1 . . . .
## closeness1 . . . .
## eccentricity1 . . . .
## ego_size1 . . . .
## eigen_centrality1 0.100721703 0.11230420 0.12383640 0.135032919
## grauIn1 0.005984722 0.01002302 0.01329013 0.015797596
## grauOut1 -0.012865014 -0.02515090 -0.03664259 -0.047539259
## grauTotal1 . . . .
## hub1 . -0.01044613 -0.02154604 -0.032304239
## power_centrality1 . . . 0.002692074
## transitividadeLocal1 . . . .
##
## (Intercept) 0.10540832 0.10501765 0.10462990 0.104433136
## autoridade1 0.14165922 0.15450980 0.16739897 0.179593467
## betweenness1 . . . .
## closeness1 . . . 0.005329762
## eccentricity1 . . . .
## ego_size1 . . . .
## eigen_centrality1 0.14588597 0.15647440 0.16675369 0.176055414
## grauIn1 0.01746004 0.01822898 0.01809461 0.016214090
## grauOut1 -0.05751253 -0.06704745 -0.07610889 -0.085756301
## grauTotal1 . . . .
## hub1 -0.04264783 -0.05270147 -0.06243048 -0.072671644
## power_centrality1 0.01012011 0.01720310 0.02393560 0.030362449
## transitividadeLocal1 . . . .
##
## (Intercept) 0.104349862 0.10441632 0.10448186 0.10453682
## autoridade1 0.191345932 0.20315537 0.21521025 0.22706523
## betweenness1 -0.001885903 -0.01279702 -0.02315799 -0.03331493
## closeness1 0.012755686 0.01929226 0.02564841 0.03170448
## eccentricity1 . . . .
## ego_size1 . . . .
## eigen_centrality1 0.185372914 0.19571122 0.20571796 0.21552601
## grauIn1 0.013586399 0.01288930 0.01116889 0.00873947
## grauOut1 -0.094336323 -0.09969106 -0.10451371 -0.10872439
## grauTotal1 . . . .
## hub1 -0.082821904 -0.09012847 -0.09731687 -0.10417618
## power_centrality1 0.036561482 0.04281919 0.04874677 0.05435907
## transitividadeLocal1 . . . .
##
## (Intercept) 0.104580158 0.104611838 0.10472484 0.10487405
## autoridade1 0.238969328 0.250832240 0.26122525 0.27085847
## betweenness1 -0.043140347 -0.052629020 -0.06265128 -0.07268916
## closeness1 0.037443179 0.042874560 0.04777662 0.05225137
## eccentricity1 . . . .
## ego_size1 . . . .
## eigen_centrality1 0.225216938 0.234705520 0.24242666 0.24930261
## grauIn1 0.005352487 0.001150447 . .
## grauOut1 -0.112312465 -0.115324286 -0.11750705 -0.11901449
## grauTotal1 . . . .
## hub1 -0.110828344 -0.117245716 -0.12330542 -0.12918293
## power_centrality1 0.059658113 0.064651745 0.06943749 0.07397825
## transitividadeLocal1 . . . .
##
## (Intercept) 0.10501382 0.10516010 0.10530606 0.10545056
## autoridade1 0.27974125 0.28840116 0.29666722 0.30453605
## betweenness1 -0.08273041 -0.09246745 -0.10198357 -0.11125916
## closeness1 0.05634851 0.06012653 0.06357956 0.06672339
## eccentricity1 . . . .
## ego_size1 . . . .
## eigen_centrality1 0.25605336 0.26223289 0.26801920 0.27344016
## grauIn1 . . . .
## grauOut1 -0.11973572 -0.11989526 -0.11942934 -0.11835681
## grauTotal1 . . . .
## hub1 -0.13483397 -0.14037843 -0.14582525 -0.15120936
## power_centrality1 0.07827795 0.08233478 0.08616568 0.08978200
## transitividadeLocal1 . . . .
##
## (Intercept) 0.10559265 0.10572515 0.10585929 0.10598928
## autoridade1 0.31200906 0.31887531 0.32553124 0.33181276
## betweenness1 -0.12027925 -0.12916359 -0.13764935 -0.14584779
## closeness1 0.06957400 0.07212085 0.07443434 0.07650605
## eccentricity1 . . . .
## ego_size1 . . . .
## eigen_centrality1 0.27852178 0.28350765 0.28802404 0.29226917
## grauIn1 . . . .
## grauOut1 -0.11669375 -0.11428455 -0.11146150 -0.10809809
## grauTotal1 . . . .
## hub1 -0.15656634 -0.16196539 -0.16738584 -0.17287952
## power_centrality1 0.09319537 0.09642888 0.09947213 0.10234629
## transitividadeLocal1 . . . .
##
## (Intercept) 0.10610858 0.105878544 0.10539368 0.10489034
## autoridade1 0.33751231 0.344584203 0.35420879 0.36348277
## betweenness1 -0.15387674 -0.160851364 -0.16535766 -0.16948784
## closeness1 0.07832858 0.080495855 0.08342882 0.08622775
## eccentricity1 . . . .
## ego_size1 . -0.008398046 -0.02391291 -0.03975668
## eigen_centrality1 0.29649074 0.302721422 0.30858581 0.31443031
## grauIn1 . . . .
## grauOut1 -0.10401272 -0.095592961 -0.08588734 -0.07538430
## grauTotal1 . . . .
## hub1 -0.17854527 -0.183703053 -0.18746466 -0.19156034
## power_centrality1 0.10507481 0.107578644 0.10970669 0.11170941
## transitividadeLocal1 . . . .
##
## (Intercept) 0.10437386 0.103771405 0.10319396 0.102569512
## autoridade1 0.37273738 0.381774116 0.39227377 0.402187334
## betweenness1 -0.17331237 -0.177050232 -0.18119796 -0.184694662
## closeness1 0.08886246 0.092317677 0.09621933 0.099980168
## eccentricity1 . . . .
## ego_size1 -0.05597687 -0.073441300 -0.09092927 -0.109234003
## eigen_centrality1 0.32005736 0.325848709 0.33019978 0.334903132
## grauIn1 . . . .
## grauOut1 -0.06406844 -0.052347740 -0.04090712 -0.028495327
## grauTotal1 . . . .
## hub1 -0.19597562 -0.200498546 -0.20491022 -0.209667017
## power_centrality1 0.11360516 0.115347962 0.11700335 0.118548906
## transitividadeLocal1 . -0.001913663 -0.00537373 -0.008514184
##
## (Intercept) 1.019294e-01 0.10113363 0.100716370 0.09989807
## autoridade1 4.119926e-01 0.42374169 0.434764676 0.45680297
## betweenness1 -1.877966e-01 -0.18859834 -0.189083469 -0.18297239
## closeness1 1.035668e-01 0.10762923 0.111196845 0.11612095
## eccentricity1 . . . .
## ego_size1 -1.279258e-01 -0.14819776 -0.159387013 -0.16787593
## eigen_centrality1 3.395135e-01 0.34527383 0.347198478 0.35639844
## grauIn1 . . -0.002875975 -0.02921548
## grauOut1 -1.535084e-02 . . .
## grauTotal1 -6.526867e-05 -0.00736735 -0.009805468 -0.01382714
## hub1 -2.146849e-01 -0.21762414 -0.214496108 -0.21584092
## power_centrality1 1.200101e-01 0.12102445 0.121509048 0.12135595
## transitividadeLocal1 -1.140117e-02 -0.01437781 -0.017561714 -0.02164897
##
## (Intercept) 0.09902303 0.09819161 0.097077824 0.09572472
## autoridade1 0.47775075 0.49806138 0.517747343 0.54208891
## betweenness1 -0.17611675 -0.16945026 -0.161809857 -0.14949669
## closeness1 0.12085530 0.12525360 0.132751523 0.14652009
## eccentricity1 . . -0.003062377 -0.01064258
## ego_size1 -0.17436159 -0.18018101 -0.187232042 -0.19553024
## eigen_centrality1 0.36912711 0.38142658 0.394955900 0.40299104
## grauIn1 -0.05958774 -0.08988831 -0.121958085 -0.15630039
## grauOut1 . . . .
## grauTotal1 -0.01767637 -0.02030930 -0.024098235 -0.03116228
## hub1 -0.21857625 -0.22198808 -0.225616640 -0.23186046
## power_centrality1 0.12103784 0.12073825 0.120172140 0.11924903
## transitividadeLocal1 -0.02562615 -0.02935334 -0.033750950 -0.03951696
##
## (Intercept) 0.09444520 0.09318404 0.09194366 0.09074028
## autoridade1 0.56579080 0.58936432 0.61304630 0.63659050
## betweenness1 -0.13806306 -0.12631377 -0.11416419 -0.10189568
## closeness1 0.15859427 0.17051362 0.18230911 0.19385436
## eccentricity1 -0.01727621 -0.02382514 -0.03030943 -0.03666422
## ego_size1 -0.20221115 -0.20840636 -0.21385004 -0.21868140
## eigen_centrality1 0.41261270 0.42213692 0.43159627 0.44068099
## grauIn1 -0.19158596 -0.22693008 -0.26260171 -0.29795649
## grauOut1 . . . .
## grauTotal1 -0.03767714 -0.04452224 -0.05201755 -0.05984733
## hub1 -0.23803243 -0.24427551 -0.25063221 -0.25699622
## power_centrality1 0.11833679 0.11735830 0.11630513 0.11521668
## transitividadeLocal1 -0.04487926 -0.05011958 -0.05527471 -0.06029574
##
## (Intercept) 0.08956951 0.08844014 0.08734302 0.08628735
## autoridade1 0.66001629 0.68315057 0.70611220 0.72872137
## betweenness1 -0.08947213 -0.07706195 -0.06451424 -0.05198691
## closeness1 0.20517761 0.21620755 0.22701763 0.23753423
## eccentricity1 -0.04290125 -0.04898282 -0.05494538 -0.06075092
## ego_size1 -0.22288162 -0.22653016 -0.22942314 -0.23156243
## eigen_centrality1 0.44949137 0.45787617 0.46611844 0.47411977
## grauIn1 -0.33305964 -0.36751279 -0.40171868 -0.43535365
## grauOut1 . . . .
## grauTotal1 -0.06816516 -0.07682358 -0.08619102 -0.09615572
## hub1 -0.26332578 -0.26953693 -0.27565229 -0.28161482
## power_centrality1 0.11408586 0.11293483 0.11173926 0.11051898
## transitividadeLocal1 -0.06520042 -0.06996224 -0.07462561 -0.07916648
##
## (Intercept) 0.08527969 0.08431523 0.08339528 0.082520705
## autoridade1 0.75080788 0.77242371 0.79351921 0.814046588
## betweenness1 -0.03965540 -0.02746770 -0.01545774 -0.003665395
## closeness1 0.24768914 0.25751793 0.26700947 0.276152137
## eccentricity1 -0.06636195 -0.07179536 -0.07704497 -0.082104129
## ego_size1 -0.23315554 -0.23417935 -0.23460148 -0.234434160
## eigen_centrality1 0.48169245 0.48893226 0.49586369 0.502491021
## grauIn1 -0.46797708 -0.49970823 -0.53049803 -0.560278094
## grauOut1 . . . .
## grauTotal1 -0.10645367 -0.11721907 -0.12848441 -0.140233492
## hub1 -0.28733371 -0.29279219 -0.29796710 -0.302835473
## power_centrality1 0.10929858 0.10806965 0.10683521 0.105599944
## transitividadeLocal1 -0.08355212 -0.08780199 -0.09191714 -0.095895919
##
## (Intercept) 0.08208724 0.08180576 0.081255531 0.08044045
## autoridade1 0.82840822 0.83700162 0.847497813 0.86433641
## betweenness1 . . 0.004364145 0.01498772
## closeness1 0.28174217 0.28499085 0.289825600 0.29752092
## eccentricity1 -0.08538715 -0.08739116 -0.090129250 -0.09433016
## ego_size1 -0.22982165 -0.22552547 -0.225913901 -0.22890433
## eigen_centrality1 0.50895124 0.51610176 0.523114022 0.52827084
## grauIn1 -0.58356017 -0.60209493 -0.622923473 -0.64775455
## grauOut1 . . . .
## grauTotal1 -0.14707092 -0.14816611 -0.148566214 -0.15480613
## hub1 -0.30693624 -0.31102133 -0.315987789 -0.32082545
## power_centrality1 0.10513212 0.10507854 0.104681682 0.10365942
## transitividadeLocal1 -0.09922354 -0.10165546 -0.104034190 -0.10703511
##
## (Intercept) 0.07968457 0.07897457 0.07832334 0.07774265
## autoridade1 0.88214322 0.90024681 0.91793991 0.93430617
## betweenness1 0.02621279 0.03784035 0.04937583 0.05999558
## closeness1 0.30533955 0.31312947 0.32064293 0.32754329
## eccentricity1 -0.09861291 -0.10288962 -0.10702584 -0.11083249
## ego_size1 -0.22961599 -0.22803347 -0.22462664 -0.22103290
## eigen_centrality1 0.53277667 0.53750202 0.54232817 0.54652140
## grauIn1 -0.67208508 -0.69654641 -0.72040791 -0.74201807
## grauOut1 . . . .
## grauTotal1 -0.16556041 -0.17975602 -0.19613176 -0.21204607
## hub1 -0.32458450 -0.32774005 -0.33038314 -0.33254672
## power_centrality1 0.10248116 0.10117796 0.09982442 0.09856136
## transitividadeLocal1 -0.11021131 -0.11349924 -0.11677437 -0.11981275
##
## (Intercept) 0.07720156 0.07669779 0.07624024 0.07581026
## autoridade1 0.94998799 0.96507434 0.97910531 0.99272056
## betweenness1 0.07016594 0.07998498 0.08907741 0.09794246
## closeness1 0.33409281 0.34033589 0.34610818 0.35165517
## eccentricity1 -0.11444516 -0.11788906 -0.12107473 -0.12413464
## ego_size1 -0.21727106 -0.21312644 -0.20915090 -0.20482827
## eigen_centrality1 0.55038727 0.55405525 0.55726121 0.56035666
## grauIn1 -0.76237203 -0.78170560 -0.79932380 -0.81622201
## grauOut1 . . . .
## grauTotal1 -0.22796249 -0.24418662 -0.25965283 -0.27548551
## hub1 -0.33434473 -0.33579328 -0.33692973 -0.33777743
## power_centrality1 0.09733256 0.09612170 0.09499023 0.09386445
## transitividadeLocal1 -0.12271933 -0.12552354 -0.12812829 -0.13066175
##
## (Intercept) 0.07541938 0.07506000 0.07472968 0.07442664
## autoridade1 1.00546538 1.01749201 1.02884333 1.03954583
## betweenness1 0.10623731 0.11406177 0.12145032 0.12842257
## closeness1 0.35681502 0.36165068 0.36618474 0.37043231
## eccentricity1 -0.12698236 -0.12965092 -0.13215280 -0.13449648
## ego_size1 -0.20050022 -0.19620959 -0.19194238 -0.18769926
## eigen_centrality1 0.56314636 0.56568293 0.56800295 0.57012918
## grauIn1 -0.83178129 -0.84622721 -0.85965659 -0.87213519
## grauOut1 . . . .
## grauTotal1 -0.29086576 -0.30583688 -0.32042580 -0.33462786
## hub1 -0.33836209 -0.33872492 -0.33889017 -0.33888061
## power_centrality1 0.09279676 0.09177709 0.09080189 0.08986982
## transitividadeLocal1 -0.13303897 -0.13528303 -0.13740361 -0.13940657
##
## (Intercept) 0.07415096 0.07389647 0.07366377 0.07345334
## autoridade1 1.04950188 1.05893239 1.06780673 1.07601415
## betweenness1 0.13489953 0.14104394 0.14683726 0.15219043
## closeness1 0.37436391 0.37806418 0.38152607 0.38471423
## eccentricity1 -0.13666591 -0.13870703 -0.14061669 -0.14237564
## ego_size1 -0.18363764 -0.17960833 -0.17561032 -0.17181001
## eigen_centrality1 0.57202495 0.57378156 0.57540358 0.57684921
## grauIn1 -0.88356173 -0.89424471 -0.90417125 -0.91322330
## grauOut1 . . . .
## grauTotal1 -0.34812823 -0.36128755 -0.37406213 -0.38611221
## hub1 -0.33873989 -0.33847076 -0.33808684 -0.33763302
## power_centrality1 0.08899612 0.08815733 0.08735652 0.08661039
## transitividadeLocal1 -0.14127074 -0.14303886 -0.14470792 -0.14625380
##
## (Intercept) 7.326160e-02 7.308479e-02 7.292718e-02 7.277805e-02
## autoridade1 1.083643e+00 1.090857e+00 1.097370e+00 1.103697e+00
## betweenness1 1.571608e-01 1.618713e-01 1.661099e-01 1.702461e-01
## closeness1 3.876647e-01 3.904397e-01 3.929398e-01 3.953516e-01
## eccentricity1 -1.440032e-01 -1.455334e-01 -1.469126e-01 -1.482418e-01
## ego_size1 -1.682171e-01 -1.646886e-01 -1.614885e-01 -1.582405e-01
## eigen_centrality1 5.781448e-01 5.793543e-01 5.803990e-01 5.814183e-01
## grauIn1 -9.215264e-01 -9.292990e-01 -9.362331e-01 -9.429133e-01
## grauOut1 -1.168589e-05 -3.142869e-05 -4.704485e-05 -6.243622e-05
## grauTotal1 -3.974699e-01 -4.084579e-01 -4.184487e-01 -4.284112e-01
## hub1 -3.371284e-01 -3.365630e-01 -3.360069e-01 -3.353873e-01
## power_centrality1 8.591252e-02 8.524424e-02 8.464098e-02 8.404556e-02
## transitividadeLocal1 -1.476906e-01 -1.490517e-01 -1.502811e-01 -1.514763e-01
##
## (Intercept) 7.264732e-02 7.252538e-02 0.0724183156 0.0723157290
## autoridade1 1.109332e+00 1.114681e+00 1.1194445448 1.1241255064
## betweenness1 1.739195e-01 1.774106e-01 0.1805077883 0.1835801200
## closeness1 3.974967e-01 3.995230e-01 0.4013272106 0.4030961433
## eccentricity1 -1.494253e-01 -1.505424e-01 -0.1515380793 -0.1525105223
## ego_size1 -1.553065e-01 -1.524701e-01 -0.1499403130 -0.1473615392
## eigen_centrality1 5.822923e-01 5.831079e-01 0.5837879147 0.5844344395
## grauIn1 -9.488021e-01 -9.543432e-01 -0.9592355913 -0.9640204306
## grauOut1 -7.362278e-05 -8.429814e-05 -0.0001235635 -0.0003305991
## grauTotal1 -4.373749e-01 -4.459964e-01 -0.4536669064 -0.4613310115
## hub1 -3.347970e-01 -3.341923e-01 -0.3336247636 -0.3328926325
## power_centrality1 8.351473e-02 8.300712e-02 0.0825560309 0.0820977937
## transitividadeLocal1 -1.525438e-01 -1.535560e-01 -0.1544584663 -0.1553507340
##
## (Intercept) 0.0722284635 0.0721493046 0.072075186 0.072009489
## autoridade1 1.1282429037 1.1320355137 1.135647530 1.138895234
## betweenness1 0.1862715040 0.1887401160 0.191092862 0.193202601
## closeness1 0.4046501629 0.4060755704 0.407426225 0.408636948
## eccentricity1 -0.1533659867 -0.1541506878 -0.154893816 -0.155560380
## ego_size1 -0.1450434542 -0.1429197048 -0.140871967 -0.139012743
## eigen_centrality1 0.5849461956 0.5853811708 0.585786248 0.586139527
## grauIn1 -0.9682174998 -0.9720872186 -0.975789168 -0.979136422
## grauOut1 -0.0006229629 -0.0009624859 -0.001337666 -0.001721748
## grauTotal1 -0.4680380384 -0.4741161360 -0.479877511 -0.485015332
## hub1 -0.3321862446 -0.3315155207 -0.330856507 -0.330251562
## power_centrality1 0.0816933571 0.0813219120 0.080966481 0.080646966
## transitividadeLocal1 -0.1561391917 -0.1568628466 -0.157550517 -0.158169291
##
## (Intercept) 0.071948245 0.071894658 0.071841899 0.071797410
## autoridade1 1.141955242 1.144657481 1.147339824 1.149648284
## betweenness1 0.195193009 0.196942936 0.198691790 0.200187841
## closeness1 0.409774220 0.410775911 0.411768162 0.412618090
## eccentricity1 -0.156186236 -0.156737972 -0.157283666 -0.157751917
## ego_size1 -0.137243326 -0.135678054 -0.134099273 -0.132720635
## eigen_centrality1 0.586470982 0.586753721 0.587043960 0.587285151
## grauIn1 -0.982307178 -0.985122386 -0.987930744 -0.990361887
## grauOut1 -0.002116312 -0.002498415 -0.002894239 -0.003266642
## grauTotal1 -0.489838913 -0.494047545 -0.498248906 -0.501834329
## hub1 -0.329671215 -0.329154687 -0.328631262 -0.328174416
## power_centrality1 0.080344683 0.080078771 0.079811924 0.079583136
## transitividadeLocal1 -0.158751678 -0.159266117 -0.159776032 -0.160215882
##
## (Intercept) 0.071756392 0.071752473
## autoridade1 1.151778971 1.152164514
## betweenness1 0.201567939 0.201731166
## closeness1 0.413401694 0.413489282
## eccentricity1 -0.158183512 -0.158239821
## ego_size1 -0.131452958 -0.131244415
## eigen_centrality1 0.587504556 0.587453943
## grauIn1 -0.992615792 -0.993041348
## grauOut1 -0.003628273 -0.003794671
## grauTotal1 -0.505112422 -0.505387485
## hub1 -0.327751582 -0.327693102
## power_centrality1 0.079372091 0.079351819
## transitividadeLocal1 -0.160621184 -0.160685574
plot(en)
plot(en$finalModel, xvar = "lambda", label = T)
plot(en$finalModel, xvar = "dev", label = T)
plot(varImp(en, scale = F))
# Erro de teste #
pred <- predict(en, testData)
regr.eval(testData$Fator_inovação, pred)
## mae mse rmse mape
## 0.8241615 1.0486710 1.0240464 1.6979599
test_y <- as.matrix(testData[, "Fator_inovação"])
data.frame(
RMSE = RMSE(pred, test_y),
Rsquare = R2(pred, test_y),
MAE = MAE(pred, test_y))
## RMSE Rsquare MAE
## 1 1.024046 0.2252365 0.8241615
library(caret)
library(DMwR)
getModelInfo()$ranger$parameters
## parameter class label
## 1 mtry numeric #Randomly Selected Predictors
## 2 splitrule character Splitting Rule
## 3 min.node.size numeric Minimal Node Size
set.seed(100, sample.kind = "Rounding")
trainRows <- createDataPartition(dados2$Fator_inovação, p = .7, list = F)
trainData <- dados2[trainRows,]
testData <- dados2[-trainRows,]
fitControl <- trainControl(
method = "LOOCV",
number = 5,
verboseIter = F)
grid_ranger <- expand.grid(mtry=c(2:12),
splitrule = c("variance", "extratrees"),
min.node.size = 5)
set.seed(100, sample.kind = "Rounding")
rrfFit <- train(Fator_inovação ~.,
data = trainData,
method = 'ranger',
metric = "RMSE",
tuneLength = 5,
trControl = fitControl,
tuneGrid = grid_ranger,
num.trees = 500,
importance = "permutation")
plot(rrfFit)
varImp(rrfFit, scale = F)
## ranger variable importance
##
## Overall
## eigen_centrality1 0.076414
## autoridade1 0.057365
## grauIn1 0.050693
## grauOut1 0.035109
## grauTotal1 0.025063
## hub1 0.022182
## ego_size1 0.003650
## closeness1 0.002147
## power_centrality1 -0.002306
## transitividadeLocal1 -0.002871
## betweenness1 -0.011343
## eccentricity1 -0.013022
varImp(rrfFit)
## ranger variable importance
##
## Overall
## eigen_centrality1 100.000
## autoridade1 78.700
## grauIn1 71.241
## grauOut1 53.817
## grauTotal1 42.584
## hub1 39.362
## ego_size1 18.642
## closeness1 16.961
## power_centrality1 11.982
## transitividadeLocal1 11.350
## betweenness1 1.878
## eccentricity1 0.000
rfImp <- varImp(rrfFit)
plot(rfImp,top = 20)
# Erro de teste #
pred <- predict(rrfFit, testData)
regr.eval(testData$Fator_inovação, pred)
## mae mse rmse mape
## 0.7397107 0.9158729 0.9570125 1.2922878
test_y <- as.matrix(testData[, "Fator_inovação"])
data.frame(
RMSE = RMSE(pred, test_y),
Rsquare = R2(pred, test_y),
MAE = MAE(pred, test_y))
## RMSE Rsquare MAE
## 1 0.9570125 0.3420608 0.7397107
# Bagging #
library(caret)
library(DMwR)
set.seed(100, sample.kind = "Rounding")
trainRows <- createDataPartition(dados2$Fator_inovação, p = .7, list = F)
trainData <- dados2[trainRows,]
testData <- dados2[-trainRows,]
getModelInfo()$treebag$parameters
## parameter class label
## 1 parameter character parameter
ctrl <- trainControl(method = "LOOCV", number = 5, verboseIter = F)
set.seed(100, sample.kind = "Rounding")
bag <- train(Fator_inovação ~ ., data = trainData, method = "treebag",
trControl = ctrl,
tuneLength=5,
metric = "RMSE",
keepX = T)
varImp(bag)
## treebag variable importance
##
## Overall
## autoridade1 100.00
## grauIn1 87.08
## eigen_centrality1 71.70
## closeness1 62.40
## hub1 53.69
## betweenness1 53.29
## grauTotal1 37.07
## transitividadeLocal1 31.58
## ego_size1 31.13
## power_centrality1 23.83
## grauOut1 21.51
## eccentricity1 0.00
varImp(bag, scale = F)
## treebag variable importance
##
## Overall
## autoridade1 0.32861
## grauIn1 0.28614
## eigen_centrality1 0.23562
## closeness1 0.20506
## hub1 0.17644
## betweenness1 0.17511
## grauTotal1 0.12181
## transitividadeLocal1 0.10377
## ego_size1 0.10228
## power_centrality1 0.07832
## grauOut1 0.07067
## eccentricity1 0.00000
# Erro de teste #
pred <- predict(bag, testData)
DMwR::regr.eval(testData$Fator_inovação, pred)
## mae mse rmse mape
## 0.6910612 0.9332493 0.9660483 1.1255538
test_y <- as.matrix(testData[, "Fator_inovação"])
data.frame(
RMSE = RMSE(pred, test_y),
Rsquare = R2(pred, test_y),
MAE = MAE(pred, test_y))
## RMSE Rsquare MAE
## 1 0.9660483 0.4154716 0.6910612
# GBM
library(DMwR)
library(caret)
set.seed(100, sample.kind = "Rounding")
trainRows <- createDataPartition(dados2$Fator_inovação, p = .7, list = F)
trainData <- dados2[trainRows,]
testData <- dados2[-trainRows,]
getModelInfo()$gbm$parameters
## parameter class label
## 1 n.trees numeric # Boosting Iterations
## 2 interaction.depth numeric Max Tree Depth
## 3 shrinkage numeric Shrinkage
## 4 n.minobsinnode numeric Min. Terminal Node Size
gbmGrid <- expand.grid(n.trees = c(150,200,250,300,350,400,450,500),
shrinkage = c(0.01,0.1,0.2),
interaction.depth = c(1:4),
n.minobsinnode = c(1:5))
trainControl <- trainControl(method = "LOOCV", number = 5)
set.seed(100, sample.kind = "Rounding")
gbmFit <- train(Fator_inovação ~., data = trainData,
method = "gbm",
metric = "RMSE",
trControl = trainControl,
tuneGrid = gbmGrid,
verbose = F)
gbmFit$bestTune
## n.trees interaction.depth shrinkage n.minobsinnode
## 64 200 1 0.01 4
plot(gbmFit)
dadosplot <- summary(gbmFit)
# Normalização
normalize <- function(x) {
return ((x - min(x)) / (max(x) - min(x)))
}
imp2 <- normalize(summary(gbmFit)$rel.inf)*100
imp <- summary(gbmFit)
imp <- cbind(imp, imp2)
# Erro de teste
pred <- predict(gbmFit, testData)
regr.eval(testData$Fator_inovação, pred)
## mae mse rmse mape
## 0.6966799 0.9122859 0.9551366 1.1168671
test_y <- as.matrix(testData[, "Fator_inovação"])
data.frame(
RMSE = RMSE(pred, test_y),
Rsquare = R2(pred, test_y),
MAE = MAE(pred, test_y)) # Métricas com R²
## RMSE Rsquare MAE
## 1 0.9551366 0.4723856 0.6966799
#XGBOOSTING
citation("xgboost")
##
## To cite package 'xgboost' in publications use:
##
## Tianqi Chen, Tong He, Michael Benesty, Vadim Khotilovich, Yuan Tang,
## Hyunsu Cho, Kailong Chen, Rory Mitchell, Ignacio Cano, Tianyi Zhou,
## Mu Li, Junyuan Xie, Min Lin, Yifeng Geng and Yutian Li (2020).
## xgboost: Extreme Gradient Boosting. R package version 1.0.0.2.
## https://CRAN.R-project.org/package=xgboost
##
## A BibTeX entry for LaTeX users is
##
## @Manual{,
## title = {xgboost: Extreme Gradient Boosting},
## author = {Tianqi Chen and Tong He and Michael Benesty and Vadim Khotilovich and Yuan Tang and Hyunsu Cho and Kailong Chen and Rory Mitchell and Ignacio Cano and Tianyi Zhou and Mu Li and Junyuan Xie and Min Lin and Yifeng Geng and Yutian Li},
## year = {2020},
## note = {R package version 1.0.0.2},
## url = {https://CRAN.R-project.org/package=xgboost},
## }
library(xgboost)
library(DiagrammeR)
library(Ckmeans.1d.dp)
library(Matrix)
library(caret)
set.seed(100, sample.kind = "Rounding")
trainRows <- createDataPartition(dados2$Fator_inovação, p = 0.7, list = F)
trainData <- dados2[trainRows,]
testData <- dados2[-trainRows,]
trainm <- sparse.model.matrix(Fator_inovação ~.,-1, data = trainData)
trainm
## 34 x 13 sparse Matrix of class "dgCMatrix"
##
## 1 1 -0.59339249 -0.38555410 -0.12003220 1.60851264 -0.55500313 -0.59401428
## 2 1 -0.21568997 -0.30095026 -0.05162955 -0.07311421 -0.55500313 0.12575533
## 4 1 1.69560716 0.60149128 0.69040058 -0.07311421 1.04063086 1.98067078
## 6 1 0.40376859 -0.22894046 0.35593626 -0.07311421 0.02522741 0.37199747
## 7 1 -1.23337893 -0.62998740 -1.02934508 1.60851264 -1.42534894 -1.13278325
## 8 1 1.48333330 3.20892147 1.16301321 -0.07311421 2.49120721 1.49111144
## 9 1 0.21891741 -0.46462800 0.43629457 -0.07311421 0.46040032 0.32855927
## 10 1 1.04748159 3.43001768 1.21406918 -0.07311421 2.49120721 1.42695217
## 11 1 -0.31621603 -0.42553582 0.23918928 -0.07311421 0.31534268 -0.37529208
## 12 1 -0.29984925 -0.29411660 0.27761234 -0.07311421 -0.11983022 -0.52295814
## 13 1 0.37185337 -0.58566862 0.09021154 -0.07311421 -0.40994549 1.06357414
## 15 1 -0.13985379 -0.49519936 0.12676626 -0.07311421 -0.40994549 -0.31620344
## 16 1 -0.27505973 -0.17868041 0.01843135 -0.07311421 0.02522741 -0.23043134
## 17 1 -1.23337893 -0.62998740 -0.05162955 -0.07311421 -0.70006076 -1.13278325
## 18 1 0.17274335 -0.04344112 0.39585620 -0.07311421 0.60545796 -0.01843684
## 19 1 2.03320195 1.73908877 0.87156876 -1.75474106 1.33074613 2.43822587
## 21 1 -0.22198797 0.75768390 0.43629457 -0.07311421 0.31534268 -0.17982131
## 22 1 0.01677069 -0.54208329 0.05410260 -0.07311421 -0.55500313 -0.02936668
## 24 1 0.62155491 0.43032916 0.51876758 -0.07311421 0.60545796 0.23224638
## 25 1 -0.52378900 -0.38766502 0.47726156 -0.07311421 0.31534268 -0.65151657
## 27 1 -0.99056361 -0.59384781 -0.83028565 1.60851264 -1.13523367 -1.03310163
## 28 1 -1.09300799 -0.56470943 -0.08603445 -0.07311421 -0.70006076 -1.08602245
## 29 1 -0.59489632 -0.53233008 -0.08603445 -0.07311421 -0.70006076 -0.14576744
## 31 1 0.37836319 -0.43232705 0.09021154 -0.07311421 -0.11983022 0.02823540
## 32 1 -1.00069043 -0.58320597 -0.55698685 -0.07311421 -0.99017603 -1.01062389
## 33 1 -0.66550710 -0.43499903 -0.12003220 -0.07311421 -0.55500313 -0.58620113
## 34 1 1.62375694 1.58939638 0.73476830 -0.07311421 1.47580377 1.28781238
## 36 1 -0.89637392 -0.62780925 -0.49870324 -0.07311421 -1.28029130 -0.86883362
## 37 1 -0.16917744 -0.10647408 0.09021154 -0.07311421 0.17028505 -0.40193036
## 42 1 1.63504542 -0.62998740 0.31652486 -0.07311421 0.17028505 1.38285683
## 43 1 -0.49059722 -0.62998740 -0.37818458 -0.07311421 -0.84511840 -0.27288803
## 44 1 -1.06513972 -0.62998740 -1.27852147 1.60851264 -1.42534894 -1.05831329
## 45 1 -0.76536054 -0.62998740 -0.64206212 -0.07311421 -1.13523367 -0.66612425
## 46 1 -1.23337893 -0.62998740 -5.51825630 -5.11799475 -1.57040657 -1.13278325
##
## 1 -0.61059070 -0.35840800 -0.56507694 -0.56754194 -0.7785451 -0.41759839
## 2 -0.21776312 -0.35840800 -0.35374735 -0.45424285 -0.3713107 -0.25461015
## 4 2.13920238 -0.67853942 0.70290058 -0.60659792 0.4824740 -0.15347617
## 6 0.17506447 -0.03827658 0.06891182 -0.31988986 -0.5278724 -0.44729261
## 7 -1.19983207 -0.99867084 -1.30473049 -0.92731435 0.5189346 -1.57567277
## 8 1.54996101 2.68284049 2.60486686 2.45570921 -0.2553361 -0.82998050
## 9 -0.21776312 0.76205197 0.38590620 1.42209970 -0.1104561 0.49069524
## 10 1.74637480 2.36270907 2.49920207 2.36604519 -0.2951252 -0.88592877
## 11 -0.41417691 0.76205197 0.28024141 0.42337293 -0.7716998 -0.53983958
## 12 -0.02134933 -0.19834229 -0.14241776 0.09263073 -0.6023857 0.22577626
## 13 0.37147826 -0.67853942 -0.24808256 -0.37600277 0.3457747 0.19302264
## 15 -0.21776312 -0.35840800 -0.35374735 -0.18780745 -0.6600361 0.70616267
## 16 -0.21776312 -0.19834229 -0.24808256 -0.48937953 1.2334816 -0.00349907
## 17 -1.19983207 -0.19834229 -0.77640652 -0.05268844 0.7891730 1.30664568
## 18 -0.02134933 1.08218339 0.70290058 0.82584218 -0.4982171 -0.38102762
## 19 2.53202996 0.28185484 1.54821893 0.59047450 0.2915370 -0.64635383
## 21 -0.21776312 0.76205197 0.38590620 1.10293505 2.2082175 -0.18484815
## 22 -0.41417691 -0.67853942 -0.67074173 -0.73959108 1.6874868 1.76987543
## 24 0.17506447 0.76205197 0.59723579 0.58976993 -0.1350947 -0.15347617
## 25 -0.61059070 0.60198626 0.06891182 0.70907671 0.1291405 0.68108755
## 27 -0.80700449 -0.99867084 -1.09340090 -1.09666472 0.5243203 0.22577626
## 28 -1.00341828 -0.19834229 -0.67074173 -0.42336138 -2.6287649 -0.03157360
## 29 -0.61059070 -0.35840800 -0.56507694 -0.22278105 0.1622085 -0.22458600
## 31 0.17506447 -0.35840800 -0.14241776 -0.35586003 0.5576128 0.22577626
## 32 -1.00341828 -0.51847371 -0.88207132 -0.62198418 2.6986833 -1.03523806
## 33 -0.41417691 -0.35840800 -0.45941214 -0.23858826 0.8774452 -0.37470675
## 34 1.15713342 2.04257765 1.97087810 2.09402983 -0.2467383 -0.59504527
## 36 -1.00341828 -0.99867084 -1.19906570 -0.98144546 -0.2586646 3.82867432
## 37 -0.21776312 0.60198626 0.28024141 0.45335947 -0.9483725 -0.53983958
## 42 1.15713342 -1.15873655 -0.14241776 -1.17194174 0.1378506 1.53592101
## 43 -0.21776312 -1.15873655 -0.88207132 -1.17194174 0.1378506 0.04563136
## 44 -1.00341828 -1.15873655 -1.30473049 -1.17194174 0.1378506 -1.57567277
## 45 -0.61059070 -1.15873655 -1.09340090 -1.17194174 0.1378506 0.22577626
## 46 -1.19983207 -1.15873655 -1.41039528 -1.17194174 0.1378506 -1.57567277
train_label <- trainData[, "Fator_inovação"]
train_matrix <- xgb.DMatrix(data = as.matrix(trainm), label = train_label)
testm <- sparse.model.matrix(Fator_inovação ~., -1, data = testData)
testm
## 12 x 13 sparse Matrix of class "dgCMatrix"
##
## 3 1 0.55273637 2.45821139 0.9659803 -0.07311421 1.76591904 0.92628088
## 5 1 0.80855526 -0.20591717 0.5187676 -0.07311421 0.60545796 0.51059067
## 14 1 -0.33206797 0.61022463 0.2391893 -0.07311421 0.46040032 -0.55184502
## 20 1 -0.80964397 -0.42882771 -0.1868348 -0.07311421 -0.11983022 -0.85462561
## 23 1 -0.09667601 -0.52861712 0.1267663 -0.07311421 -0.11983022 -0.20511885
## 26 1 2.74915955 0.23747514 0.8715688 -0.07311421 1.47580377 2.19668332
## 30 1 -1.05318014 -0.53802036 0.3165249 -0.07311421 0.17028505 -0.95780130
## 35 1 -0.59945435 0.09619398 0.3165249 -0.07311421 0.02522741 -0.76800348
## 38 1 -0.78863665 -0.62998740 -0.7779153 1.60851264 -0.99017603 -0.97886785
## 39 1 -0.46972365 -0.62998740 -0.4391172 1.60851264 -0.84511840 -0.25422021
## 40 1 2.11574957 1.05038838 0.9184444 -0.07311421 1.62086140 2.21059519
## 41 1 0.23807341 -0.62998740 -0.2196535 -0.07311421 -0.70006076 0.01453132
##
## 3 0.56789205 2.36270907 1.86521331 2.1227845 -0.20994083 -0.59940362
## 5 0.17506447 0.76205197 0.59723579 0.9056358 -0.07984237 -0.05866306
## 14 -0.02134933 0.60198626 0.38590620 0.4728472 0.48785964 -0.42327523
## 20 -0.41417691 -0.03827658 -0.24808256 -0.2148191 0.08206890 -0.39654250
## 23 -0.41417691 0.12178913 -0.14241776 0.4921252 -0.23726624 0.30766031
## 26 2.72844376 -0.19834229 1.33688934 -0.2796156 0.51568232 -0.36177327
## 30 -1.00341828 0.76205197 -0.03675297 0.6493844 -2.87624549 0.01791676
## 35 -0.61059070 0.28185484 -0.14241776 0.2003933 -2.42239668 0.22577626
## 38 -0.41417691 -1.15873655 -0.98773611 -1.1719417 0.13785059 -0.67494825
## 39 -0.21776312 -1.15873655 -0.88207132 -1.1719417 0.13785059 0.58606607
## 40 2.13920238 0.44192055 1.44255413 0.5631939 0.21940575 -0.40550075
## 41 -0.02134933 -1.15873655 -0.77640652 -1.1719417 0.13785059 2.74780491
test_label <- testData[, "Fator_inovação"]
test_matrix <- xgb.DMatrix(data = as.matrix(testm), label = test_label)
# Parâmetros #
xgb_params <- list("objective" = "reg:linear",
"eval_metric" = "rmse")
watchlist <- list(train = train_matrix, test = test_matrix)
# Modelo #
set.seed(100, sample.kind = "Rounding")
bst_model <- xgb.train(params = xgb_params,
data = train_matrix,
nfold = 34,
nrounds = 1000,
watchlist = watchlist,
eta = 0.01,
max.depth = 1,
gamma = 0,
subsample = 0.1,
colsample_bytree = 0.5,
booster = "gbtree",
verbose = 0)
bst_model
## ##### xgb.Booster
## raw: 237.1 Kb
## call:
## xgb.train(params = xgb_params, data = train_matrix, nrounds = 1000,
## watchlist = watchlist, verbose = 0, nfold = 34, eta = 0.01,
## max.depth = 1, gamma = 0, subsample = 0.1, colsample_bytree = 0.5,
## booster = "gbtree")
## params (as set within xgb.train):
## objective = "reg:linear", eval_metric = "rmse", nfold = "34", eta = "0.01", max_depth = "1", gamma = "0", subsample = "0.1", colsample_bytree = "0.5", booster = "gbtree", silent = "1"
## xgb.attributes:
## niter
## callbacks:
## cb.evaluation.log()
## # of features: 13
## niter: 1000
## nfeatures : 13
## evaluation_log:
## iter train_rmse test_rmse
## 1 1.032224 1.299790
## 2 1.028734 1.295287
## ---
## 999 0.756646 0.955193
## 1000 0.756078 0.954679
e <- data.frame(bst_model$evaluation_log)
plot(e$iter, e$train_rmse, col = "blue")
plot(e$iter, e$test_rmse, col = "red")
min(e$test_rmse) #0.949946
## [1] 0.949946
e[e$test_rmse == 0.949946,]
## iter train_rmse test_rmse
## 992 992 0.756803 0.949946
imp <- xgb.importance(colnames(train_matrix), model = bst_model)
imp$Importance
## NULL
xgb.plot.importance(imp)
# Normalização
normalize <- function(x) {
return ((x - min(x)) / (max(x) - min(x)))
}
imp2 <- normalize(imp$Importance)*100
imp <- cbind(imp, imp2)
imp
## Feature Gain Cover Frequency Importance imp2
## 1: autoridade1 0.25072027 0.27108434 0.31208499 0.25072027 100.000000
## 2: betweenness1 0.17491505 0.16097724 0.16733068 0.17491505 68.061750
## 3: closeness1 0.14998415 0.14759036 0.14741036 0.14998415 57.557865
## 4: ego_size1 0.08394535 0.08366801 0.08366534 0.08394535 29.734397
## 5: power_centrality1 0.07206961 0.08165997 0.06374502 0.07206961 24.730911
## 6: transitividadeLocal1 0.05882443 0.05120482 0.04515272 0.05882443 19.150454
## 7: hub1 0.05586344 0.04886212 0.04116866 0.05586344 17.902930
## 8: eigen_centrality1 0.05528882 0.04651941 0.04382470 0.05528882 17.660830
## 9: grauIn1 0.03683195 0.03748327 0.03585657 0.03683195 9.884582
## 10: grauOut1 0.03146745 0.03580991 0.03054449 0.03146745 7.624413
## 11: grauTotal1 0.01671852 0.01740295 0.01328021 0.01671852 1.410396
## 12: eccentricity1 0.01337096 0.01773762 0.01593625 0.01337096 0.000000
# Erro de teste #
pred <- predict(bst_model, test_matrix)
DMwR::regr.eval(testData$Fator_inovação, pred)
## mae mse rmse mape
## 0.6884326 0.9114127 0.9546794 1.0038981
test_y <- as.matrix(testData[, "Fator_inovação"])
data.frame(
RMSE = RMSE(pred, test_y),
Rsquare = R2(pred, test_y),
MAE = MAE(pred, test_y))
## RMSE Rsquare MAE
## 1 0.9546794 0.5099895 0.6884326