Options

options mcompilenote=ALL symbolgen mprint;
SAS Connection established. Subprocess id is 11072

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34   ods listing close;ods html5 (id=saspy_internal) file=stdout options(bitmap_mode='inline') device=svg style=HTMLBlue; ods
34 ! graphics on / outputfmt=png;
NOTE: Writing HTML5(SASPY_INTERNAL) Body file: STDOUT
35   
36   options mcompilenote=ALL symbolgen mprint;
37   
38   ods html5 (id=saspy_internal) close;ods listing;

39

Assign library

libname i "/folders/myfolders/lib5";

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41   ods listing close;ods html5 (id=saspy_internal) file=stdout options(bitmap_mode='inline') device=svg style=HTMLBlue; ods
41 ! graphics on / outputfmt=png;
NOTE: Writing HTML5(SASPY_INTERNAL) Body file: STDOUT
42   
43   libname i "/folders/myfolders/lib5";
NOTE: Libref I was successfully assigned as follows: 
      Engine:        V9 
      Physical Name: /folders/myfolders/lib5
44   
45   ods html5 (id=saspy_internal) close;ods listing;

46

Check library contents

proc contents data=i._all_ nods;
run;
<!DOCTYPE html> SAS Output

The SAS System

The CONTENTS Procedure

Directory
Libref I
Engine V9
Physical Name /folders/myfolders/lib5
Filename /folders/myfolders/lib5
Inode Number 213
Access Permission rwxrwx—
Owner Name root
File Size 0KB
File Size (bytes) 0
# Name Member Type File Size Last Modified
1 GTF DATA 823MB 07/08/2020 05:56:41 
proc print data=i.gtf (obs=5);
run;
<!DOCTYPE html> SAS Output

The SAS System

Obs seqid source type start end score strand phase attribute SeqName
1 1 Ensembl chromosome 1 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11 Chr1
2 1   biological_region 10469 11240 1.3e+03     external_name=oe %3D 0.79;logic_name=cpg Chr1
3 1   biological_region 10650 10657 0.999 +   logic_name=eponine Chr1
4 1   biological_region 10655 10657 0.999 -   logic_name=eponine Chr1
5 1   biological_region 10678 10687 0.999 +   logic_name=eponine Chr1

Splitting a dataset based on the unique values of a variable or column into a destination or output library

Assign a library

libname o "/folders/myfolders/lib6";

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64   ods listing close;ods html5 (id=saspy_internal) file=stdout options(bitmap_mode='inline') device=svg style=HTMLBlue; ods
64 ! graphics on / outputfmt=png;
NOTE: Writing HTML5(SASPY_INTERNAL) Body file: STDOUT
65   
66   libname o "/folders/myfolders/lib6";
NOTE: Libref O was successfully assigned as follows: 
      Engine:        V9 
      Physical Name: /folders/myfolders/lib6
67   
68   ods html5 (id=saspy_internal) close;ods listing;

69

Compile the macro

%macro subset_to_a_lib(data=, var=, lib=);

%let lib=%upcase(&lib);

    proc sort data=&data(keep=&var) out=values nodupkey;
        by &var;
    run;
    
    data _null_;
        set values end=OnLastRow;
        call symputx('site'||left(_n_), &var);
        if OnLastRow then call symputx('count', _n_);
    run;
    
    %put _local_;
    
data
    %do i=1 %to &count;
        &lib..&&site&i
    %end;
    ;
    
        set &data;
    
        select(&var);
    
    %do i=1 %to &count;
        when ("&&site&i") output &lib..&&site&i;
    %end;

        otherwise;
    
        end;
    run;
    
%mend;

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71   ods listing close;ods html5 (id=saspy_internal) file=stdout options(bitmap_mode='inline') device=svg style=HTMLBlue; ods
71 ! graphics on / outputfmt=png;
NOTE: Writing HTML5(SASPY_INTERNAL) Body file: STDOUT
72   
73   %macro subset_to_a_lib(data=, var=, lib=);
74   
75   %let lib=%upcase(&lib);
76   
77       proc sort data=&data(keep=&var) out=values nodupkey;
78           by &var;
79       run;
80   
81       data _null_;
82           set values end=OnLastRow;
83           call symputx('site'||left(_n_), &var);
84           if OnLastRow then call symputx('count', _n_);
85       run;
86   
87       %put _local_;
88   
89   data
90       %do i=1 %to &count;
91           &lib..&&site&i
92       %end;
93       ;
94   
95           set &data;
96   
97           select(&var);
98   
99       %do i=1 %to &count;
100          when ("&&site&i") output &lib..&&site&i;
101      %end;
102  
103          otherwise;
104  
105          end;
106      run;
107  
108  %mend;
NOTE: The macro SUBSET_TO_A_LIB completed compilation without errors.
      42 instructions 1272 bytes.
109  
110  ods html5 (id=saspy_internal) close;ods listing;

111

Call the macro with parameters

%subset_to_a_lib(data=i.gtf, var=type, lib=o)

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113  ods listing close;ods html5 (id=saspy_internal) file=stdout options(bitmap_mode='inline') device=svg style=HTMLBlue; ods
113! graphics on / outputfmt=png;
NOTE: Writing HTML5(SASPY_INTERNAL) Body file: STDOUT
114  
115  %subset_to_a_lib(data=i.gtf, var=type, lib=o)
SYMBOLGEN:  Macro variable LIB resolves to o
SYMBOLGEN:  Macro variable DATA resolves to i.gtf
SYMBOLGEN:  Macro variable VAR resolves to type
MPRINT(SUBSET_TO_A_LIB):   proc sort data=i.gtf(keep=type) out=values nodupkey;
SYMBOLGEN:  Macro variable VAR resolves to type
MPRINT(SUBSET_TO_A_LIB):   by type;
MPRINT(SUBSET_TO_A_LIB):   run;
NOTE: There were 2911086 observations read from the data set I.GTF.
NOTE: 2911060 observations with duplicate key values were deleted.
NOTE: The data set WORK.VALUES has 26 observations and 1 variables.
NOTE: PROCEDURE SORT used (Total process time):
      real time           5.01 seconds
      cpu time            3.24 seconds
      
MPRINT(SUBSET_TO_A_LIB):   data _null_;
MPRINT(SUBSET_TO_A_LIB):   set values end=OnLastRow;
SYMBOLGEN:  Macro variable VAR resolves to type
MPRINT(SUBSET_TO_A_LIB):   call symputx('site'||left(_n_), type);
MPRINT(SUBSET_TO_A_LIB):   if OnLastRow then call symputx('count', _n_);
MPRINT(SUBSET_TO_A_LIB):   run;
NOTE: Numeric values have been converted to character values at the places given by: (Line):(Column).
      188:171   
NOTE: There were 26 observations read from the data set WORK.VALUES.
NOTE: DATA statement used (Total process time):
      real time           0.00 seconds
      cpu time            0.00 seconds
      
SUBSET_TO_A_LIB COUNT 26
SUBSET_TO_A_LIB DATA i.gtf
SUBSET_TO_A_LIB LIB O
SUBSET_TO_A_LIB SITE1 CDS
SUBSET_TO_A_LIB SITE10 gene
SUBSET_TO_A_LIB SITE11 lnc_RNA
SUBSET_TO_A_LIB SITE12 mRNA
SUBSET_TO_A_LIB SITE13 miRNA
SUBSET_TO_A_LIB SITE14 ncRNA
SUBSET_TO_A_LIB SITE15 ncRNA_gene
SUBSET_TO_A_LIB SITE16 pseudogene
SUBSET_TO_A_LIB SITE17 pseudogenic_transcr
SUBSET_TO_A_LIB SITE18 rRNA
SUBSET_TO_A_LIB SITE19 scRNA
SUBSET_TO_A_LIB SITE2 C_gene_segment
SUBSET_TO_A_LIB SITE20 scaffold
SUBSET_TO_A_LIB SITE21 snRNA
SUBSET_TO_A_LIB SITE22 snoRNA
SUBSET_TO_A_LIB SITE23 tRNA
SUBSET_TO_A_LIB SITE24 three_prime_UTR
SUBSET_TO_A_LIB SITE25 unconfirmed_transcr
SUBSET_TO_A_LIB SITE26 vaultRNA_primary_tr
SUBSET_TO_A_LIB SITE3 D_gene_segment
SUBSET_TO_A_LIB SITE4 J_gene_segment
SUBSET_TO_A_LIB SITE5 V_gene_segment
SUBSET_TO_A_LIB SITE6 biological_region
SUBSET_TO_A_LIB SITE7 chromosome
SUBSET_TO_A_LIB SITE8 exon
SUBSET_TO_A_LIB SITE9 five_prime_UTR
SUBSET_TO_A_LIB VAR type
SYMBOLGEN:  Macro variable COUNT resolves to 26
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 1
SYMBOLGEN:  Macro variable SITE1 resolves to CDS
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 2
SYMBOLGEN:  Macro variable SITE2 resolves to C_gene_segment
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 3
SYMBOLGEN:  Macro variable SITE3 resolves to D_gene_segment
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 4
SYMBOLGEN:  Macro variable SITE4 resolves to J_gene_segment
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 5
SYMBOLGEN:  Macro variable SITE5 resolves to V_gene_segment
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 6
SYMBOLGEN:  Macro variable SITE6 resolves to biological_region
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 7
SYMBOLGEN:  Macro variable SITE7 resolves to chromosome
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 8
SYMBOLGEN:  Macro variable SITE8 resolves to exon
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 9
SYMBOLGEN:  Macro variable SITE9 resolves to five_prime_UTR
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 10
SYMBOLGEN:  Macro variable SITE10 resolves to gene
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 11
SYMBOLGEN:  Macro variable SITE11 resolves to lnc_RNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 12
SYMBOLGEN:  Macro variable SITE12 resolves to mRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 13
SYMBOLGEN:  Macro variable SITE13 resolves to miRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 14
SYMBOLGEN:  Macro variable SITE14 resolves to ncRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 15
SYMBOLGEN:  Macro variable SITE15 resolves to ncRNA_gene
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 16
SYMBOLGEN:  Macro variable SITE16 resolves to pseudogene
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 17
SYMBOLGEN:  Macro variable SITE17 resolves to pseudogenic_transcr
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 18
SYMBOLGEN:  Macro variable SITE18 resolves to rRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 19
SYMBOLGEN:  Macro variable SITE19 resolves to scRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 20
SYMBOLGEN:  Macro variable SITE20 resolves to scaffold
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 21
SYMBOLGEN:  Macro variable SITE21 resolves to snRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 22
SYMBOLGEN:  Macro variable SITE22 resolves to snoRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 23
SYMBOLGEN:  Macro variable SITE23 resolves to tRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 24
SYMBOLGEN:  Macro variable SITE24 resolves to three_prime_UTR
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 25
SYMBOLGEN:  Macro variable SITE25 resolves to unconfirmed_transcr
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 26
SYMBOLGEN:  Macro variable SITE26 resolves to vaultRNA_primary_tr
MPRINT(SUBSET_TO_A_LIB):   data O.CDS O.C_gene_segment O.D_gene_segment O.J_gene_segment O.V_gene_segment O.biological_region 
O.chromosome O.exon O.five_prime_UTR O.gene O.lnc_RNA O.mRNA O.miRNA O.ncRNA O.ncRNA_gene O.pseudogene O.pseudogenic_transcr O.rRNA 
O.scRNA O.scaffold O.snRNA O.snoRNA O.tRNA O.three_prime_UTR O.unconfirmed_transcr O.vaultRNA_primary_tr ;
SYMBOLGEN:  Macro variable DATA resolves to i.gtf
MPRINT(SUBSET_TO_A_LIB):   set i.gtf;
SYMBOLGEN:  Macro variable VAR resolves to type
MPRINT(SUBSET_TO_A_LIB):   select(type);
SYMBOLGEN:  Macro variable COUNT resolves to 26
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 1
SYMBOLGEN:  Macro variable SITE1 resolves to CDS
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 1
SYMBOLGEN:  Macro variable SITE1 resolves to CDS
MPRINT(SUBSET_TO_A_LIB):   when ("CDS") output O.CDS;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 2
SYMBOLGEN:  Macro variable SITE2 resolves to C_gene_segment
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 2
SYMBOLGEN:  Macro variable SITE2 resolves to C_gene_segment
MPRINT(SUBSET_TO_A_LIB):   when ("C_gene_segment") output O.C_gene_segment;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 3
SYMBOLGEN:  Macro variable SITE3 resolves to D_gene_segment
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 3
SYMBOLGEN:  Macro variable SITE3 resolves to D_gene_segment
MPRINT(SUBSET_TO_A_LIB):   when ("D_gene_segment") output O.D_gene_segment;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 4
SYMBOLGEN:  Macro variable SITE4 resolves to J_gene_segment
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 4
SYMBOLGEN:  Macro variable SITE4 resolves to J_gene_segment
MPRINT(SUBSET_TO_A_LIB):   when ("J_gene_segment") output O.J_gene_segment;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 5
SYMBOLGEN:  Macro variable SITE5 resolves to V_gene_segment
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 5
SYMBOLGEN:  Macro variable SITE5 resolves to V_gene_segment
MPRINT(SUBSET_TO_A_LIB):   when ("V_gene_segment") output O.V_gene_segment;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 6
SYMBOLGEN:  Macro variable SITE6 resolves to biological_region
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 6
SYMBOLGEN:  Macro variable SITE6 resolves to biological_region
MPRINT(SUBSET_TO_A_LIB):   when ("biological_region") output O.biological_region;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 7
SYMBOLGEN:  Macro variable SITE7 resolves to chromosome
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 7
SYMBOLGEN:  Macro variable SITE7 resolves to chromosome
MPRINT(SUBSET_TO_A_LIB):   when ("chromosome") output O.chromosome;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 8
SYMBOLGEN:  Macro variable SITE8 resolves to exon
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 8
SYMBOLGEN:  Macro variable SITE8 resolves to exon
MPRINT(SUBSET_TO_A_LIB):   when ("exon") output O.exon;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 9
SYMBOLGEN:  Macro variable SITE9 resolves to five_prime_UTR
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 9
SYMBOLGEN:  Macro variable SITE9 resolves to five_prime_UTR
MPRINT(SUBSET_TO_A_LIB):   when ("five_prime_UTR") output O.five_prime_UTR;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 10
SYMBOLGEN:  Macro variable SITE10 resolves to gene
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 10
SYMBOLGEN:  Macro variable SITE10 resolves to gene
MPRINT(SUBSET_TO_A_LIB):   when ("gene") output O.gene;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 11
SYMBOLGEN:  Macro variable SITE11 resolves to lnc_RNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 11
SYMBOLGEN:  Macro variable SITE11 resolves to lnc_RNA
MPRINT(SUBSET_TO_A_LIB):   when ("lnc_RNA") output O.lnc_RNA;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 12
SYMBOLGEN:  Macro variable SITE12 resolves to mRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 12
SYMBOLGEN:  Macro variable SITE12 resolves to mRNA
MPRINT(SUBSET_TO_A_LIB):   when ("mRNA") output O.mRNA;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 13
SYMBOLGEN:  Macro variable SITE13 resolves to miRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 13
SYMBOLGEN:  Macro variable SITE13 resolves to miRNA
MPRINT(SUBSET_TO_A_LIB):   when ("miRNA") output O.miRNA;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 14
SYMBOLGEN:  Macro variable SITE14 resolves to ncRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 14
SYMBOLGEN:  Macro variable SITE14 resolves to ncRNA
MPRINT(SUBSET_TO_A_LIB):   when ("ncRNA") output O.ncRNA;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 15
SYMBOLGEN:  Macro variable SITE15 resolves to ncRNA_gene
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 15
SYMBOLGEN:  Macro variable SITE15 resolves to ncRNA_gene
MPRINT(SUBSET_TO_A_LIB):   when ("ncRNA_gene") output O.ncRNA_gene;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 16
SYMBOLGEN:  Macro variable SITE16 resolves to pseudogene
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 16
SYMBOLGEN:  Macro variable SITE16 resolves to pseudogene
MPRINT(SUBSET_TO_A_LIB):   when ("pseudogene") output O.pseudogene;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 17
SYMBOLGEN:  Macro variable SITE17 resolves to pseudogenic_transcr
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 17
SYMBOLGEN:  Macro variable SITE17 resolves to pseudogenic_transcr
MPRINT(SUBSET_TO_A_LIB):   when ("pseudogenic_transcr") output O.pseudogenic_transcr;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 18
SYMBOLGEN:  Macro variable SITE18 resolves to rRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 18
SYMBOLGEN:  Macro variable SITE18 resolves to rRNA
MPRINT(SUBSET_TO_A_LIB):   when ("rRNA") output O.rRNA;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 19
SYMBOLGEN:  Macro variable SITE19 resolves to scRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 19
SYMBOLGEN:  Macro variable SITE19 resolves to scRNA
MPRINT(SUBSET_TO_A_LIB):   when ("scRNA") output O.scRNA;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 20
SYMBOLGEN:  Macro variable SITE20 resolves to scaffold
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 20
SYMBOLGEN:  Macro variable SITE20 resolves to scaffold
MPRINT(SUBSET_TO_A_LIB):   when ("scaffold") output O.scaffold;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 21
SYMBOLGEN:  Macro variable SITE21 resolves to snRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 21
SYMBOLGEN:  Macro variable SITE21 resolves to snRNA
MPRINT(SUBSET_TO_A_LIB):   when ("snRNA") output O.snRNA;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 22
SYMBOLGEN:  Macro variable SITE22 resolves to snoRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 22
SYMBOLGEN:  Macro variable SITE22 resolves to snoRNA
MPRINT(SUBSET_TO_A_LIB):   when ("snoRNA") output O.snoRNA;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 23
SYMBOLGEN:  Macro variable SITE23 resolves to tRNA
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 23
SYMBOLGEN:  Macro variable SITE23 resolves to tRNA
MPRINT(SUBSET_TO_A_LIB):   when ("tRNA") output O.tRNA;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 24
SYMBOLGEN:  Macro variable SITE24 resolves to three_prime_UTR
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 24
SYMBOLGEN:  Macro variable SITE24 resolves to three_prime_UTR
MPRINT(SUBSET_TO_A_LIB):   when ("three_prime_UTR") output O.three_prime_UTR;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 25
SYMBOLGEN:  Macro variable SITE25 resolves to unconfirmed_transcr
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 25
SYMBOLGEN:  Macro variable SITE25 resolves to unconfirmed_transcr
MPRINT(SUBSET_TO_A_LIB):   when ("unconfirmed_transcr") output O.unconfirmed_transcr;
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 26
SYMBOLGEN:  Macro variable SITE26 resolves to vaultRNA_primary_tr
SYMBOLGEN:  Macro variable LIB resolves to O
SYMBOLGEN:  && resolves to &.
SYMBOLGEN:  Macro variable I resolves to 26
SYMBOLGEN:  Macro variable SITE26 resolves to vaultRNA_primary_tr
MPRINT(SUBSET_TO_A_LIB):   when ("vaultRNA_primary_tr") output O.vaultRNA_primary_tr;
MPRINT(SUBSET_TO_A_LIB):   otherwise;
MPRINT(SUBSET_TO_A_LIB):   end;
MPRINT(SUBSET_TO_A_LIB):   run;
NOTE: There were 2911086 observations read from the data set I.GTF.
NOTE: The data set O.CDS has 762023 observations and 10 variables.
NOTE: The data set O.C_GENE_SEGMENT has 29 observations and 10 variables.
NOTE: The data set O.D_GENE_SEGMENT has 41 observations and 10 variables.
NOTE: The data set O.J_GENE_SEGMENT has 97 observations and 10 variables.
NOTE: The data set O.V_GENE_SEGMENT has 250 observations and 10 variables.
NOTE: The data set O.BIOLOGICAL_REGION has 182510 observations and 10 variables.
NOTE: The data set O.CHROMOSOME has 25 observations and 10 variables.
NOTE: The data set O.EXON has 1371695 observations and 10 variables.
NOTE: The data set O.FIVE_PRIME_UTR has 152699 observations and 10 variables.
NOTE: The data set O.GENE has 21487 observations and 10 variables.
NOTE: The data set O.LNC_RNA has 103513 observations and 10 variables.
NOTE: The data set O.MRNA has 99916 observations and 10 variables.
NOTE: The data set O.MIRNA has 1879 observations and 10 variables.
NOTE: The data set O.NCRNA has 2235 observations and 10 variables.
NOTE: The data set O.NCRNA_GENE has 23934 observations and 10 variables.
NOTE: The data set O.PSEUDOGENE has 15202 observations and 10 variables.
NOTE: The data set O.PSEUDOGENIC_TRANSCR has 15251 observations and 10 variables.
NOTE: The data set O.RRNA has 60 observations and 10 variables.
NOTE: The data set O.SCRNA has 50 observations and 10 variables.
NOTE: The data set O.SCAFFOLD has 169 observations and 10 variables.
NOTE: The data set O.SNRNA has 1915 observations and 10 variables.
NOTE: The data set O.SNORNA has 954 observations and 10 variables.
NOTE: The data set O.TRNA has 22 observations and 10 variables.
NOTE: The data set O.THREE_PRIME_UTR has 153974 observations and 10 variables.
NOTE: The data set O.UNCONFIRMED_TRANSCR has 1155 observations and 10 variables.
NOTE: The data set O.VAULTRNA_PRIMARY_TR has 1 observations and 10 variables.
NOTE: DATA statement used (Total process time):
      real time           20.23 seconds
      cpu time            5.49 seconds
      
116  
117  ods html5 (id=saspy_internal) close;ods listing;

118

Check the contents of the library following subsetting

Using proc contents

proc contents data=o._all_ nods;
run;
<!DOCTYPE html> SAS Output

The SAS System

The CONTENTS Procedure

Directory
Libref O
Engine V9
Physical Name /folders/myfolders/lib6
Filename /folders/myfolders/lib6
Inode Number 214
Access Permission rwxrwx—
Owner Name root
File Size 24KB
File Size (bytes) 24576
# Name Member Type File Size Last Modified
1 BIOLOGICAL_REGION DATA 52MB 07/08/2020 16:21:59
2 CDS DATA 216MB 07/08/2020 16:21:59
3 CHROMOSOME DATA 128KB 07/08/2020 16:21:59
4 C_GENE_SEGMENT DATA 128KB 07/08/2020 16:21:59
5 D_GENE_SEGMENT DATA 128KB 07/08/2020 16:21:59
6 EXON DATA 388MB 07/08/2020 16:21:59
7 FIVE_PRIME_UTR DATA 43MB 07/08/2020 16:22:02
8 GENE DATA 6MB 07/08/2020 16:22:02
9 J_GENE_SEGMENT DATA 128KB 07/08/2020 16:21:59
10 LNC_RNA DATA 29MB 07/08/2020 16:22:02
11 MIRNA DATA 640KB 07/08/2020 16:22:02
12 MRNA DATA 28MB 07/08/2020 16:22:02
13 NCRNA DATA 768KB 07/08/2020 16:22:02
14 NCRNA_GENE DATA 7MB 07/08/2020 16:22:02
15 PSEUDOGENE DATA 4MB 07/08/2020 16:22:02
16 PSEUDOGENIC_TRANSCR DATA 4MB 07/08/2020 16:22:02
17 RRNA DATA 128KB 07/08/2020 16:22:02
18 SCAFFOLD DATA 128KB 07/08/2020 16:22:02
19 SCRNA DATA 128KB 07/08/2020 16:22:02
20 SNORNA DATA 384KB 07/08/2020 16:22:02
21 SNRNA DATA 640KB 07/08/2020 16:22:02
22 THREE_PRIME_UTR DATA 44MB 07/08/2020 16:22:03
23 TRNA DATA 128KB 07/08/2020 16:22:03
24 UNCONFIRMED_TRANSCR DATA 448KB 07/08/2020 16:22:03
25 VAULTRNA_PRIMARY_TR DATA 128KB 07/08/2020 16:22:03
26 V_GENE_SEGMENT DATA 192KB 07/08/2020 16:21:59

Using proc datasets

proc datasets library=O memtype=data nodetails;
    contents data=_all_ noprint;
run;
<!DOCTYPE html> SAS Output

The SAS System

Directory
Libref O
Engine V9
Physical Name /folders/myfolders/lib6
Filename /folders/myfolders/lib6
Inode Number 214
Access Permission rwxrwx—
Owner Name root
File Size 24KB
File Size (bytes) 24576
# Name Member Type File Size Last Modified
1 BIOLOGICAL_REGION DATA 52MB 07/08/2020 16:21:59
2 CDS DATA 216MB 07/08/2020 16:21:59
3 CHROMOSOME DATA 128KB 07/08/2020 16:21:59
4 C_GENE_SEGMENT DATA 128KB 07/08/2020 16:21:59
5 D_GENE_SEGMENT DATA 128KB 07/08/2020 16:21:59
6 EXON DATA 388MB 07/08/2020 16:21:59
7 FIVE_PRIME_UTR DATA 43MB 07/08/2020 16:22:02
8 GENE DATA 6MB 07/08/2020 16:22:02
9 J_GENE_SEGMENT DATA 128KB 07/08/2020 16:21:59
10 LNC_RNA DATA 29MB 07/08/2020 16:22:02
11 MIRNA DATA 640KB 07/08/2020 16:22:02
12 MRNA DATA 28MB 07/08/2020 16:22:02
13 NCRNA DATA 768KB 07/08/2020 16:22:02
14 NCRNA_GENE DATA 7MB 07/08/2020 16:22:02
15 PSEUDOGENE DATA 4MB 07/08/2020 16:22:02
16 PSEUDOGENIC_TRANSCR DATA 4MB 07/08/2020 16:22:02
17 RRNA DATA 128KB 07/08/2020 16:22:02
18 SCAFFOLD DATA 128KB 07/08/2020 16:22:02
19 SCRNA DATA 128KB 07/08/2020 16:22:02
20 SNORNA DATA 384KB 07/08/2020 16:22:02
21 SNRNA DATA 640KB 07/08/2020 16:22:02
22 THREE_PRIME_UTR DATA 44MB 07/08/2020 16:22:03
23 TRNA DATA 128KB 07/08/2020 16:22:03
24 UNCONFIRMED_TRANSCR DATA 448KB 07/08/2020 16:22:03
25 VAULTRNA_PRIMARY_TR DATA 128KB 07/08/2020 16:22:03
26 V_GENE_SEGMENT DATA 192KB 07/08/2020 16:21:59

Using a macro created using proc datasets

%macro lib_data(libname);
   
   proc datasets library=&libname memtype=data nodetails;
      contents data=_all_ noprint;
   run;
   
%mend lib_data;
<!DOCTYPE html> SAS Output 
%lib_data(o)
<!DOCTYPE html> SAS Output

The SAS System

Directory
Libref O
Engine V9
Physical Name /folders/myfolders/lib6
Filename /folders/myfolders/lib6
Inode Number 214
Access Permission rwxrwx—
Owner Name root
File Size 24KB
File Size (bytes) 24576
# Name Member Type File Size Last Modified
1 BIOLOGICAL_REGION DATA 52MB 07/08/2020 16:21:59
2 CDS DATA 216MB 07/08/2020 16:21:59
3 CHROMOSOME DATA 128KB 07/08/2020 16:21:59
4 C_GENE_SEGMENT DATA 128KB 07/08/2020 16:21:59
5 D_GENE_SEGMENT DATA 128KB 07/08/2020 16:21:59
6 EXON DATA 388MB 07/08/2020 16:21:59
7 FIVE_PRIME_UTR DATA 43MB 07/08/2020 16:22:02
8 GENE DATA 6MB 07/08/2020 16:22:02
9 J_GENE_SEGMENT DATA 128KB 07/08/2020 16:21:59
10 LNC_RNA DATA 29MB 07/08/2020 16:22:02
11 MIRNA DATA 640KB 07/08/2020 16:22:02
12 MRNA DATA 28MB 07/08/2020 16:22:02
13 NCRNA DATA 768KB 07/08/2020 16:22:02
14 NCRNA_GENE DATA 7MB 07/08/2020 16:22:02
15 PSEUDOGENE DATA 4MB 07/08/2020 16:22:02
16 PSEUDOGENIC_TRANSCR DATA 4MB 07/08/2020 16:22:02
17 RRNA DATA 128KB 07/08/2020 16:22:02
18 SCAFFOLD DATA 128KB 07/08/2020 16:22:02
19 SCRNA DATA 128KB 07/08/2020 16:22:02
20 SNORNA DATA 384KB 07/08/2020 16:22:02
21 SNRNA DATA 640KB 07/08/2020 16:22:02
22 THREE_PRIME_UTR DATA 44MB 07/08/2020 16:22:03
23 TRNA DATA 128KB 07/08/2020 16:22:03
24 UNCONFIRMED_TRANSCR DATA 448KB 07/08/2020 16:22:03
25 VAULTRNA_PRIMARY_TR DATA 128KB 07/08/2020 16:22:03
26 V_GENE_SEGMENT DATA 192KB 07/08/2020 16:21:59

Printing all data sets in a library

This macro is available at: https://documentation.sas.com/?docsetId=proc&docsetTarget=p0g6uil9htd45jn17qr2s2oq0kp2.htm&docsetVersion=9.4&locale=en .


%macro printall(libname,worklib=work);

   %local num i;
   
   proc datasets library=&libname memtype=data nodetails;
      contents out=&worklib..temp1(keep=memname) data=_all_ noprint;
   run;
   
   data _null_;
      set &worklib..temp1 end=final;
      by memname notsorted;
      if last.memname;
      n+1;
      call symput('ds'||left(put(n,8.)),trim(memname));
      if final then call symput('num',put(n,8.));
   run;
   
   %do i=1 %to &num;
      proc print data=&libname..&&ds&i (obs=5);
         title "Data Set &libname..&&ds&i";
      run;
   %end;
   
%mend printall;
<!DOCTYPE html> SAS Output 
%printall(o)
<!DOCTYPE html> SAS Output

The SAS System

Directory
Libref O
Engine V9
Physical Name /folders/myfolders/lib6
Filename /folders/myfolders/lib6
Inode Number 214
Access Permission rwxrwx—
Owner Name root
File Size 24KB
File Size (bytes) 24576
# Name Member Type File Size Last Modified
1 BIOLOGICAL_REGION DATA 52MB 07/08/2020 16:21:59
2 CDS DATA 216MB 07/08/2020 16:21:59
3 CHROMOSOME DATA 128KB 07/08/2020 16:21:59
4 C_GENE_SEGMENT DATA 128KB 07/08/2020 16:21:59
5 D_GENE_SEGMENT DATA 128KB 07/08/2020 16:21:59
6 EXON DATA 388MB 07/08/2020 16:21:59
7 FIVE_PRIME_UTR DATA 43MB 07/08/2020 16:22:02
8 GENE DATA 6MB 07/08/2020 16:22:02
9 J_GENE_SEGMENT DATA 128KB 07/08/2020 16:21:59
10 LNC_RNA DATA 29MB 07/08/2020 16:22:02
11 MIRNA DATA 640KB 07/08/2020 16:22:02
12 MRNA DATA 28MB 07/08/2020 16:22:02
13 NCRNA DATA 768KB 07/08/2020 16:22:02
14 NCRNA_GENE DATA 7MB 07/08/2020 16:22:02
15 PSEUDOGENE DATA 4MB 07/08/2020 16:22:02
16 PSEUDOGENIC_TRANSCR DATA 4MB 07/08/2020 16:22:02
17 RRNA DATA 128KB 07/08/2020 16:22:02
18 SCAFFOLD DATA 128KB 07/08/2020 16:22:02
19 SCRNA DATA 128KB 07/08/2020 16:22:02
20 SNORNA DATA 384KB 07/08/2020 16:22:02
21 SNRNA DATA 640KB 07/08/2020 16:22:02
22 THREE_PRIME_UTR DATA 44MB 07/08/2020 16:22:03
23 TRNA DATA 128KB 07/08/2020 16:22:03
24 UNCONFIRMED_TRANSCR DATA 448KB 07/08/2020 16:22:03
25 VAULTRNA_PRIMARY_TR DATA 128KB 07/08/2020 16:22:03
26 V_GENE_SEGMENT DATA 192KB 07/08/2020 16:21:59

Data Set o.BIOLOGICAL_REGION

Obs seqid source type start end score strand phase attribute SeqName
1 1   biological_region 10469 11240 1.3e+03     external_name=oe %3D 0.79;logic_name=cpg Chr1
2 1   biological_region 10650 10657 0.999 +   logic_name=eponine Chr1
3 1   biological_region 10655 10657 0.999 -   logic_name=eponine Chr1
4 1   biological_region 10678 10687 0.999 +   logic_name=eponine Chr1
5 1   biological_region 10681 10688 0.999 -   logic_name=eponine Chr1

Data Set o.CDS

Obs seqid source type start end score strand phase attribute SeqName
1 1 havana CDS 65565 65573   + 0 ID=CDS:ENSP00000493376;Parent=transcript:ENST00000641515;protein_id=ENSP00000493376 Chr1
2 1 havana CDS 69037 70008   + 0 ID=CDS:ENSP00000493376;Parent=transcript:ENST00000641515;protein_id=ENSP00000493376 Chr1
3 1 ensembl CDS 69091 70008   + 0 ID=CDS:ENSP00000334393;Parent=transcript:ENST00000335137;protein_id=ENSP00000334393 Chr1
4 1 ensembl_h CDS 450740 451678   - 0 ID=CDS:ENSP00000409316;Parent=transcript:ENST00000426406;protein_id=ENSP00000409316 Chr1
5 1 ensembl_h CDS 685716 686654   - 0 ID=CDS:ENSP00000329982;Parent=transcript:ENST00000332831;protein_id=ENSP00000329982 Chr1

Data Set o.CHROMOSOME

Obs seqid source type start end score strand phase attribute SeqName
1 1 Ensembl chromosome 1 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11 Chr1
2 10 Ensembl chromosome 1 133797422       ID=chromosome:10;Alias=CM000672.2,chr10,NC_000010.11 Chr10
3 11 Ensembl chromosome 1 135086622       ID=chromosome:11;Alias=CM000673.2,chr11,NC_000011.10 Chr11
4 12 Ensembl chromosome 1 133275309       ID=chromosome:12;Alias=CM000674.2,chr12,NC_000012.12 Chr12
5 13 Ensembl chromosome 1 114364328       ID=chromosome:13;Alias=CM000675.2,chr13,NC_000013.11 Chr13

Data Set o.C_GENE_SEGMENT

Obs seqid source type start end score strand phase attribute SeqName
1 14 havana C_gene_segment 22462932 22465787   +   ID=transcript:ENST00000390477;Parent=gene:ENSG00000211829;Name=TRDC-201;biotype=TR_C_gene;tag=basic;transcript_id=ENST00000390477;transcript_support_level=NA;version=2 Chr14
2 14 havana C_gene_segment 22547506 22552156   +   ID=transcript:ENST00000611116;Parent=gene:ENSG00000277734;Name=TRAC-201;biotype=TR_C_gene;tag=basic;transcript_id=ENST00000611116;transcript_support_level=NA (assigned to previous version 1);version=2 Chr14
3 14 havana C_gene_segment 105583731 105588395   -   ID=transcript:ENST00000497872;Parent=gene:ENSG00000211890;Name=IGHA2-202;biotype=IG_C_gene;tag=basic;transcript_id=ENST00000497872;transcript_support_level=1 (assigned to previous version 3);version=4 Chr14
4 14 havana C_gene_segment 105586889 105588395   -   ID=transcript:ENST00000390539;Parent=gene:ENSG00000211890;Name=IGHA2-201;biotype=IG_C_gene;transcript_id=ENST00000390539;transcript_support_level=NA;version=2 Chr14
5 14 havana C_gene_segment 105597691 105601728   -   ID=transcript:ENST00000641420;Parent=gene:ENSG00000211891;Name=IGHE-202;biotype=IG_C_gene;tag=basic;transcript_id=ENST00000641420;version=1 Chr14

Data Set o.D_GENE_SEGMENT

Obs seqid source type start end score strand phase attribute SeqName
1 14 havana D_gene_segment 22438547 22438554   +   ID=transcript:ENST00000415118;Parent=gene:ENSG00000223997;Name=TRDD1-201;biotype=TR_D_gene;tag=basic;transcript_id=ENST00000415118;transcript_support_level=NA;version=1 Chr14
2 14 havana D_gene_segment 22439007 22439015   +   ID=transcript:ENST00000434970;Parent=gene:ENSG00000237235;Name=TRDD2-201;biotype=TR_D_gene;tag=basic;transcript_id=ENST00000434970;transcript_support_level=NA;version=2 Chr14
3 14 havana D_gene_segment 22449113 22449125   +   ID=transcript:ENST00000448914;Parent=gene:ENSG00000228985;Name=TRDD3-201;biotype=TR_D_gene;tag=basic;transcript_id=ENST00000448914;transcript_support_level=NA;version=1 Chr14
4 14 havana D_gene_segment 105865551 105865561   -   ID=transcript:ENST00000439842;Parent=gene:ENSG00000236597;Name=IGHD7-27-201;biotype=IG_D_gene;tag=basic;transcript_id=ENST00000439842;transcript_support_level=NA;version=1 Chr14
5 14 havana D_gene_segment 105881034 105881053   -   ID=transcript:ENST00000390567;Parent=gene:ENSG00000211907;Name=IGHD1-26-201;biotype=IG_D_gene;tag=basic;transcript_id=ENST00000390567;transcript_support_level=NA;version=1 Chr14

Data Set o.EXON

Obs seqid source type start end score strand phase attribute SeqName
1 1 havana exon 11869 12227   +   Parent=transcript:ENST00000456328;Name=ENSE00002234944;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002234944;rank=1;version=1 Chr1
2 1 havana exon 12613 12721   +   Parent=transcript:ENST00000456328;Name=ENSE00003582793;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003582793;rank=2;version=1 Chr1
3 1 havana exon 13221 14409   +   Parent=transcript:ENST00000456328;Name=ENSE00002312635;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002312635;rank=3;version=1 Chr1
4 1 havana exon 12010 12057   +   Parent=transcript:ENST00000450305;Name=ENSE00001948541;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00001948541;rank=1;version=1 Chr1
5 1 havana exon 12179 12227   +   Parent=transcript:ENST00000450305;Name=ENSE00001671638;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00001671638;rank=2;version=2 Chr1

Data Set o.FIVE_PRIME_UTR

Obs seqid source type start end score strand phase attribute SeqName
1 1 havana five_prime_UTR 65419 65433   +   Parent=transcript:ENST00000641515 Chr1
2 1 havana five_prime_UTR 65520 65564   +   Parent=transcript:ENST00000641515 Chr1
3 1 ensembl five_prime_UTR 69055 69090   +   Parent=transcript:ENST00000335137 Chr1
4 1 ensembl_h five_prime_UTR 451679 451697   -   Parent=transcript:ENST00000426406 Chr1
5 1 ensembl_h five_prime_UTR 686655 686673   -   Parent=transcript:ENST00000332831 Chr1

Data Set o.GENE

Obs seqid source type start end score strand phase attribute SeqName
1 1 ensembl_h gene 65419 71585   +   ID=gene:ENSG00000186092;Name=OR4F5;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 5 [Source:HGNC Symbol%3BAcc:HGNC:14825];gene_id=ENSG00000186092;logic_name=ensembl_havana_gene_homo_sapiens;v Chr1
2 1 ensembl_h gene 450703 451697   -   ID=gene:ENSG00000284733;Name=OR4F29;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 29 [Source:HGNC Symbol%3BAcc:HGNC:31275];gene_id=ENSG00000284733;logic_name=ensembl_havana_gene_homo_sapiens Chr1
3 1 ensembl_h gene 685679 686673   -   ID=gene:ENSG00000284662;Name=OR4F16;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 16 [Source:HGNC Symbol%3BAcc:HGNC:15079];gene_id=ENSG00000284662;logic_name=ensembl_havana_gene_homo_sapiens Chr1
4 1 ensembl_h gene 923928 944581   +   ID=gene:ENSG00000187634;Name=SAMD11;biotype=protein_coding;description=sterile alpha motif domain containing 11 [Source:HGNC Symbol%3BAcc:HGNC:28706];gene_id=ENSG00000187634;logic_name=ensembl_havana_gene_homo_sapiens;version= Chr1
5 1 ensembl_h gene 944203 959309   -   ID=gene:ENSG00000188976;Name=NOC2L;biotype=protein_coding;description=NOC2 like nucleolar associated transcriptional repressor [Source:HGNC Symbol%3BAcc:HGNC:24517];gene_id=ENSG00000188976;logic_name=ensembl_havana_gene_homo_s Chr1

Data Set o.J_GENE_SEGMENT

Obs seqid source type start end score strand phase attribute SeqName
1 14 havana J_gene_segment 22450089 22450139   +   ID=transcript:ENST00000390473;Parent=gene:ENSG00000211825;Name=TRDJ1-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390473;transcript_support_level=NA;version=1 Chr14
2 14 havana J_gene_segment 22455249 22455296   +   ID=transcript:ENST00000390474;Parent=gene:ENSG00000211826;Name=TRDJ4-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390474;transcript_support_level=NA;version=1 Chr14
3 14 havana J_gene_segment 22456689 22456742   +   ID=transcript:ENST00000390475;Parent=gene:ENSG00000211827;Name=TRDJ2-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390475;transcript_support_level=NA;version=1 Chr14
4 14 havana J_gene_segment 22459098 22459156   +   ID=transcript:ENST00000390476;Parent=gene:ENSG00000211828;Name=TRDJ3-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390476;transcript_support_level=NA;version=1 Chr14
5 14 havana J_gene_segment 22475316 22475375   +   ID=transcript:ENST00000390479;Parent=gene:ENSG00000211831;Name=TRAJ61-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390479;transcript_support_level=NA;version=2 Chr14

Data Set o.LNC_RNA

Obs seqid source type start end score strand phase attribute SeqName
1 1 havana lnc_RNA 11869 14409   +   ID=transcript:ENST00000456328;Parent=gene:ENSG00000223972;Name=DDX11L1-202;biotype=lncRNA;tag=basic;transcript_id=ENST00000456328;transcript_support_level=1;version=2 Chr1
2 1 havana lnc_RNA 29554 31097   +   ID=transcript:ENST00000473358;Parent=gene:ENSG00000243485;Name=MIR1302-2HG-202;biotype=lncRNA;tag=basic;transcript_id=ENST00000473358;transcript_support_level=5;version=1 Chr1
3 1 havana lnc_RNA 30267 31109   +   ID=transcript:ENST00000469289;Parent=gene:ENSG00000243485;Name=MIR1302-2HG-201;biotype=lncRNA;tag=basic;transcript_id=ENST00000469289;transcript_support_level=5;version=1 Chr1
4 1 havana lnc_RNA 34554 36081   -   ID=transcript:ENST00000417324;Parent=gene:ENSG00000237613;Name=FAM138A-201;biotype=lncRNA;tag=basic;transcript_id=ENST00000417324;transcript_support_level=1;version=1 Chr1
5 1 havana lnc_RNA 35245 36073   -   ID=transcript:ENST00000461467;Parent=gene:ENSG00000237613;Name=FAM138A-202;biotype=lncRNA;transcript_id=ENST00000461467;transcript_support_level=3;version=1 Chr1

Data Set o.MIRNA

Obs seqid source type start end score strand phase attribute SeqName
1 1 mirbase miRNA 17369 17436   -   ID=transcript:ENST00000619216;Parent=gene:ENSG00000278267;Name=MIR6859-1-201;biotype=miRNA;tag=basic;transcript_id=ENST00000619216;transcript_support_level=NA;version=1 Chr1
2 1 mirbase miRNA 30366 30503   +   ID=transcript:ENST00000607096;Parent=gene:ENSG00000284332;Name=MIR1302-2-201;biotype=miRNA;tag=basic;transcript_id=ENST00000607096;transcript_support_level=NA;version=1 Chr1
3 1 mirbase miRNA 187891 187958   -   ID=transcript:ENST00000612080;Parent=gene:ENSG00000273874;Name=MIR6859-2-201;biotype=miRNA;tag=basic;transcript_id=ENST00000612080;transcript_support_level=NA;version=1 Chr1
4 1 mirbase miRNA 632325 632413   -   ID=transcript:ENST00000621981;Parent=gene:ENSG00000278791;Name=AC114498.2-201;biotype=miRNA;tag=basic;transcript_id=ENST00000621981;transcript_support_level=NA;version=1 Chr1
5 1 mirbase miRNA 1167104 1167198   +   ID=transcript:ENST00000384997;Parent=gene:ENSG00000207730;Name=MIR200B-201;biotype=miRNA;tag=basic;transcript_id=ENST00000384997;transcript_support_level=NA;version=3 Chr1

Data Set o.MRNA

Obs seqid source type start end score strand phase attribute SeqName
1 1 havana mRNA 65419 71585   +   ID=transcript:ENST00000641515;Parent=gene:ENSG00000186092;Name=OR4F5-202;biotype=protein_coding;tag=basic;transcript_id=ENST00000641515;version=2 Chr1
2 1 ensembl mRNA 69055 70108   +   ID=transcript:ENST00000335137;Parent=gene:ENSG00000186092;Name=OR4F5-201;biotype=protein_coding;ccdsid=CCDS30547.1;tag=basic;transcript_id=ENST00000335137;transcript_support_level=NA (assigned to previous version 3);version=4 Chr1
3 1 ensembl_h mRNA 450703 451697   -   ID=transcript:ENST00000426406;Parent=gene:ENSG00000284733;Name=OR4F29-201;biotype=protein_coding;ccdsid=CCDS72675.1;tag=basic;transcript_id=ENST00000426406;transcript_support_level=NA (assigned to previous version 2);version=3 Chr1
4 1 ensembl_h mRNA 685679 686673   -   ID=transcript:ENST00000332831;Parent=gene:ENSG00000284662;Name=OR4F16-201;biotype=protein_coding;ccdsid=CCDS41221.1;tag=basic;transcript_id=ENST00000332831;transcript_support_level=NA (assigned to previous version 3);version=4 Chr1
5 1 havana mRNA 923928 939291   +   ID=transcript:ENST00000420190;Parent=gene:ENSG00000187634;Name=SAMD11-203;biotype=protein_coding;transcript_id=ENST00000420190;transcript_support_level=3;version=6 Chr1

Data Set o.NCRNA

Obs seqid source type start end score strand phase attribute SeqName
1 1 ensembl ncRNA 1405460 1405752   -   ID=transcript:ENST00000582431;Parent=gene:ENSG00000264293;Name=RN7SL657P-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000582431;transcript_support_level=NA;version=2 Chr1
2 1 ensembl ncRNA 3736943 3737103   +   ID=transcript:ENST00000611447;Parent=gene:ENSG00000276189;Name=AL136528.3-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000611447;transcript_support_level=NA;version=1 Chr1
3 1 ensembl ncRNA 3782815 3783111   +   ID=transcript:ENST00000581512;Parent=gene:ENSG00000266075;Name=RN7SL574P-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000581512;transcript_support_level=NA;version=2 Chr1
4 1 ensembl ncRNA 7982881 7982983   -   ID=transcript:ENST00000363474;Parent=gene:ENSG00000200344;Name=Y_RNA.140-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000363474;transcript_support_level=NA;version=1 Chr1
5 1 ensembl ncRNA 8328067 8328179   +   ID=transcript:ENST00000516445;Parent=gene:ENSG00000252254;Name=Y_RNA.681-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000516445;transcript_support_level=NA;version=1 Chr1

Data Set o.NCRNA_GENE

Obs seqid source type start end score strand phase attribute SeqName
1 1 mirbase ncRNA_gene 17369 17436   -   ID=gene:ENSG00000278267;Name=MIR6859-1;biotype=miRNA;description=microRNA 6859-1 [Source:HGNC Symbol%3BAcc:HGNC:50039];gene_id=ENSG00000278267;logic_name=ncrna_homo_sapiens;version=1 Chr1
2 1 havana ncRNA_gene 29554 31109   +   ID=gene:ENSG00000243485;Name=MIR1302-2HG;biotype=lncRNA;description=MIR1302-2 host gene [Source:HGNC Symbol%3BAcc:HGNC:52482];gene_id=ENSG00000243485;logic_name=havana_homo_sapiens;version=5 Chr1
3 1 mirbase ncRNA_gene 30366 30503   +   ID=gene:ENSG00000284332;Name=MIR1302-2;biotype=miRNA;description=microRNA 1302-2 [Source:HGNC Symbol%3BAcc:HGNC:35294];gene_id=ENSG00000284332;logic_name=ncrna_homo_sapiens;version=1 Chr1
4 1 havana ncRNA_gene 34554 36081   -   ID=gene:ENSG00000237613;Name=FAM138A;biotype=lncRNA;description=family with sequence similarity 138 member A [Source:HGNC Symbol%3BAcc:HGNC:32334];gene_id=ENSG00000237613;logic_name=havana_homo_sapiens;version=2 Chr1
5 1 ensembl_h ncRNA_gene 89295 133723   -   ID=gene:ENSG00000238009;Name=AL627309.1;biotype=lncRNA;description=novel transcript;gene_id=ENSG00000238009;logic_name=ensembl_havana_lincrna_homo_sapiens;version=6 Chr1

Data Set o.PSEUDOGENE

Obs seqid source type start end score strand phase attribute SeqName
1 1 havana pseudogene 11869 14409   +   ID=gene:ENSG00000223972;Name=DDX11L1;biotype=transcribed_unprocessed_pseudogene;description=DEAD/H-box helicase 11 like 1 [Source:HGNC Symbol%3BAcc:HGNC:37102];gene_id=ENSG00000223972;logic_name=havana_homo_sapiens;version=5 Chr1
2 1 havana pseudogene 14404 29570   -   ID=gene:ENSG00000227232;Name=WASH7P;biotype=unprocessed_pseudogene;description=WASP family homolog 7%2C pseudogene [Source:HGNC Symbol%3BAcc:HGNC:38034];gene_id=ENSG00000227232;logic_name=havana_homo_sapiens;version=5 Chr1
3 1 havana pseudogene 52473 53312   +   ID=gene:ENSG00000268020;Name=OR4G4P;biotype=unprocessed_pseudogene;description=olfactory receptor family 4 subfamily G member 4 pseudogene [Source:HGNC Symbol%3BAcc:HGNC:14822];gene_id=ENSG00000268020;logic_name=havana_homo_sa Chr1
4 1 havana pseudogene 57598 64116   +   ID=gene:ENSG00000240361;Name=OR4G11P;biotype=transcribed_unprocessed_pseudogene;description=olfactory receptor family 4 subfamily G member 11 pseudogene [Source:HGNC Symbol%3BAcc:HGNC:31276];gene_id=ENSG00000240361;logic_name= Chr1
5 1 havana pseudogene 131025 134836   +   ID=gene:ENSG00000233750;Name=CICP27;biotype=processed_pseudogene;description=capicua transcriptional repressor pseudogene 27 [Source:HGNC Symbol%3BAcc:HGNC:48835];gene_id=ENSG00000233750;logic_name=havana_homo_sapiens;version= Chr1

Data Set o.PSEUDOGENIC_TRANSCR

Obs seqid source type start end score strand phase attribute SeqName
1 1 havana pseudogenic_transcr 12010 13670   +   ID=transcript:ENST00000450305;Parent=gene:ENSG00000223972;Name=DDX11L1-201;biotype=transcribed_unprocessed_pseudogene;tag=basic;transcript_id=ENST00000450305;transcript_support_level=NA;version=2 Chr1
2 1 havana pseudogenic_transcr 14404 29570   -   ID=transcript:ENST00000488147;Parent=gene:ENSG00000227232;Name=WASH7P-201;biotype=unprocessed_pseudogene;tag=basic;transcript_id=ENST00000488147;transcript_support_level=NA;version=1 Chr1
3 1 havana pseudogenic_transcr 52473 53312   +   ID=transcript:ENST00000606857;Parent=gene:ENSG00000268020;Name=OR4G4P-201;biotype=unprocessed_pseudogene;tag=basic;transcript_id=ENST00000606857;transcript_support_level=NA;version=1 Chr1
4 1 havana pseudogenic_transcr 62949 63887   +   ID=transcript:ENST00000492842;Parent=gene:ENSG00000240361;Name=OR4G11P-201;biotype=transcribed_unprocessed_pseudogene;tag=basic;transcript_id=ENST00000492842;transcript_support_level=NA (assigned to previous version 1);version Chr1
5 1 havana pseudogenic_transcr 131025 134836   +   ID=transcript:ENST00000442987;Parent=gene:ENSG00000233750;Name=CICP27-201;biotype=processed_pseudogene;tag=basic;transcript_id=ENST00000442987;transcript_support_level=NA;version=3 Chr1

Data Set o.RRNA

Obs seqid source type start end score strand phase attribute SeqName
1 1 ensembl rRNA 143439605 143439714   +   ID=transcript:ENST00000517021;Parent=gene:ENSG00000252830;Name=RNA5SP533-201;biotype=rRNA;tag=basic;transcript_id=ENST00000517021;transcript_support_level=NA;version=2 Chr1
2 1 ensembl rRNA 144265217 144265326   +   ID=transcript:ENST00000621941;Parent=gene:ENSG00000276442;Name=RNA5SP529-201;biotype=rRNA;tag=basic;transcript_id=ENST00000621941;transcript_support_level=NA;version=1 Chr1
3 1 ensembl rRNA 146539541 146539663   -   ID=transcript:ENST00000622298;Parent=gene:ENSG00000274408;Name=RNA5SP536-201;biotype=rRNA;tag=basic;transcript_id=ENST00000622298;transcript_support_level=NA;version=1 Chr1
4 1 ensembl rRNA 182944365 182944490   -   ID=transcript:ENST00000362967;Parent=gene:ENSG00000199837;Name=RNA5SP71-201;biotype=rRNA;tag=basic;transcript_id=ENST00000362967;transcript_support_level=NA;version=1 Chr1
5 1 ensembl rRNA 207708898 207708981   -   ID=transcript:ENST00000618635;Parent=gene:ENSG00000274059;Name=RNA5SP534-201;biotype=rRNA;tag=basic;transcript_id=ENST00000618635;transcript_support_level=NA;version=1 Chr1

Data Set o.SCAFFOLD

Obs seqid source type start end score strand phase attribute SeqName
1 GL0 Ensembl scaffold 1 209709       ID=scaffold:GL000008.2;Alias=chr4_GL000008v2_random,NT_113793.3 GL10
2 GL0 Ensembl scaffold 1 201709       ID=scaffold:GL000009.2;Alias=chr14_GL000009v2_random,NT_113796.3 GL10
3 GL0 Ensembl scaffold 1 191469       ID=scaffold:GL000194.1;Alias=chr14_GL000194v1_random,NT_113888.1 GL10
4 GL0 Ensembl scaffold 1 182896       ID=scaffold:GL000195.1;Alias=chrUn_GL000195v1,NT_113901.1 GL10
5 GL0 Ensembl scaffold 1 185591       ID=scaffold:GL000205.2;Alias=chr17_GL000205v2_random,NT_113930.2 GL10

Data Set o.SCRNA

Obs seqid source type start end score strand phase attribute SeqName
1 1 ensembl scRNA 9082696 9082879   +   ID=transcript:ENST00000516595;Parent=gene:ENSG00000252404;Name=AL158048.1-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000516595;transcript_support_level=NA;version=1 Chr1
2 1 ensembl scRNA 13696070 13696199   -   ID=transcript:ENST00000517276;Parent=gene:ENSG00000253085;Name=AL359771.2-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000517276;transcript_support_level=NA;version=1 Chr1
3 1 ensembl scRNA 15542165 15542304   +   ID=transcript:ENST00000516057;Parent=gene:ENSG00000251866;Name=SCARNA21B-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000516057;transcript_support_level=NA;version=1 Chr1
4 1 ensembl scRNA 26006006 26006130   +   ID=transcript:ENST00000516381;Parent=gene:ENSG00000252190;Name=AL592064.1-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000516381;transcript_support_level=NA;version=1 Chr1
5 1 ensembl scRNA 26006216 26006299   +   ID=transcript:ENST00000516882;Parent=gene:ENSG00000252691;Name=AL592064.2-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000516882;transcript_support_level=NA;version=1 Chr1

Data Set o.SNORNA

Obs seqid source type start end score strand phase attribute SeqName
1 1 ensembl snoRNA 8511795 8511919   -   ID=transcript:ENST00000408156;Parent=gene:ENSG00000221083;Name=AL096855.1-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000408156;transcript_support_level=NA;version=1 Chr1
2 1 ensembl snoRNA 12221148 12221271   -   ID=transcript:ENST00000517160;Parent=gene:ENSG00000252969;Name=SNORA70.22-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000517160;transcript_support_level=NA;version=1 Chr1
3 1 ensembl snoRNA 12507246 12507397   +   ID=transcript:ENST00000459326;Parent=gene:ENSG00000239149;Name=SNORA59A-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000459326;transcript_support_level=NA;version=1 Chr1
4 1 ensembl snoRNA 26642286 26642389   -   ID=transcript:ENST00000459201;Parent=gene:ENSG00000238316;Name=AL627082.2-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000459201;transcript_support_level=NA;version=1 Chr1
5 1 ensembl snoRNA 28507366 28507571   +   ID=transcript:ENST00000364938;Parent=gene:ENSG00000274266;Name=SNORA73A-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000364938;transcript_support_level=NA;version=1 Chr1

Data Set o.SNRNA

Obs seqid source type start end score strand phase attribute SeqName
1 1 ensembl snRNA 157784 157887   -   ID=transcript:ENST00000410691;Parent=gene:ENSG00000222623;Name=RNU6-1100P-201;biotype=snRNA;tag=basic;transcript_id=ENST00000410691;transcript_support_level=NA;version=1 Chr1
2 1 ensembl snRNA 516376 516479   -   ID=transcript:ENST00000614007;Parent=gene:ENSG00000278757;Name=U6.90-201;biotype=snRNA;tag=basic;transcript_id=ENST00000614007;transcript_support_level=NA;version=1 Chr1
3 1 ensembl snRNA 758233 758336   -   ID=transcript:ENST00000411249;Parent=gene:ENSG00000223181;Name=RNU6-1199P-201;biotype=snRNA;tag=basic;transcript_id=ENST00000411249;transcript_support_level=NA;version=1 Chr1
4 1 ensembl snRNA 6540854 6540964   +   ID=transcript:ENST00000517213;Parent=gene:ENSG00000253022;Name=RNU6-731P-201;biotype=snRNA;tag=basic;transcript_id=ENST00000517213;transcript_support_level=NA;version=1 Chr1
5 1 ensembl snRNA 7219360 7219524   +   ID=transcript:ENST00000384328;Parent=gene:ENSG00000207056;Name=RNU1-8P-201;biotype=snRNA;tag=basic;transcript_id=ENST00000384328;transcript_support_level=NA;version=1 Chr1

Data Set o.THREE_PRIME_UTR

Obs seqid source type start end score strand phase attribute SeqName
1 1 havana three_prime_UTR 70009 71585   +   Parent=transcript:ENST00000641515 Chr1
2 1 ensembl three_prime_UTR 70009 70108   +   Parent=transcript:ENST00000335137 Chr1
3 1 ensembl_h three_prime_UTR 450703 450739   -   Parent=transcript:ENST00000426406 Chr1
4 1 ensembl_h three_prime_UTR 685679 685715   -   Parent=transcript:ENST00000332831 Chr1
5 1 havana three_prime_UTR 944154 944574   +   Parent=transcript:ENST00000342066 Chr1

Data Set o.TRNA

Obs seqid source type start end score strand phase attribute SeqName
1 MT ensembl tRNA 577 647   +   ID=transcript:ENST00000387314;Parent=gene:ENSG00000210049;Name=MT-TF-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387314;transcript_support_level=NA;version=1 MT
2 MT ensembl tRNA 1602 1670   +   ID=transcript:ENST00000387342;Parent=gene:ENSG00000210077;Name=MT-TV-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387342;transcript_support_level=NA;version=1 MT
3 MT ensembl tRNA 3230 3304   +   ID=transcript:ENST00000386347;Parent=gene:ENSG00000209082;Name=MT-TL1-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000386347;transcript_support_level=NA;version=1 MT
4 MT ensembl tRNA 4263 4331   +   ID=transcript:ENST00000387365;Parent=gene:ENSG00000210100;Name=MT-TI-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387365;transcript_support_level=NA;version=1 MT
5 MT ensembl tRNA 4329 4400   -   ID=transcript:ENST00000387372;Parent=gene:ENSG00000210107;Name=MT-TQ-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387372;transcript_support_level=NA;version=1 MT

Data Set o.UNCONFIRMED_TRANSCR

Obs seqid source type start end score strand phase attribute SeqName
1 1 havana unconfirmed_transcr 2566410 2569888   +   ID=transcript:ENST00000456687;Parent=gene:ENSG00000225931;Name=AL139246.2-201;biotype=TEC;tag=basic;transcript_id=ENST00000456687;transcript_support_level=5;version=3 Chr1
2 1 havana unconfirmed_transcr 3205988 3208664   +   ID=transcript:ENST00000624175;Parent=gene:ENSG00000279839;Name=AL512383.1-201;biotype=TEC;tag=basic;transcript_id=ENST00000624175;transcript_support_level=NA;version=1 Chr1
3 1 havana unconfirmed_transcr 9826289 9828271   -   ID=transcript:ENST00000639753;Parent=gene:ENSG00000280113;Name=AL357140.3-201;biotype=TEC;tag=basic;transcript_id=ENST00000639753;transcript_support_level=NA;version=1 Chr1
4 1 ensembl unconfirmed_transcr 9827610 9828258   -   ID=transcript:ENST00000623863;Parent=gene:ENSG00000280113;Name=AL357140.3-202;biotype=TEC;transcript_id=ENST00000623863;transcript_support_level=NA;version=1 Chr1
5 1 havana unconfirmed_transcr 18109389 18115861   +   ID=transcript:ENST00000624418;Parent=gene:ENSG00000280222;Name=AL365209.1-201;biotype=TEC;tag=basic;transcript_id=ENST00000624418;transcript_support_level=NA;version=1 Chr1

Data Set o.VAULTRNA_PRIMARY_TR

Obs seqid source type start end score strand phase attribute SeqName
1 5 havana vaultRNA_primary_tr 136080470 136080597   -   ID=transcript:ENST00000602301;Parent=gene:ENSG00000270123;Name=VTRNA2-1-201;biotype=vaultRNA;tag=basic;transcript_id=ENST00000602301;transcript_support_level=NA (assigned to previous version 1);version=2 Chr5

Data Set o.V_GENE_SEGMENT

Obs seqid source type start end score strand phase attribute SeqName
1 14 havana V_gene_segment 21621838 21622567   +   ID=transcript:ENST00000542354;Parent=gene:ENSG00000255569;Name=TRAV1-1-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000542354;transcript_support_level=NA;version=1 Chr14
2 14 havana V_gene_segment 21642889 21643578   +   ID=transcript:ENST00000390423;Parent=gene:ENSG00000256553;Name=TRAV1-2-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000390423;transcript_support_level=NA;version=2 Chr14
3 14 havana V_gene_segment 21712321 21712843   +   ID=transcript:ENST00000390424;Parent=gene:ENSG00000211776;Name=TRAV2-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000390424;transcript_support_level=NA;version=2 Chr14
4 14 havana V_gene_segment 21723713 21724321   +   ID=transcript:ENST00000390425;Parent=gene:ENSG00000211777;Name=TRAV3-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000390425;transcript_support_level=NA;version=2 Chr14
5 14 havana V_gene_segment 21736152 21736982   +   ID=transcript:ENST00000390426;Parent=gene:ENSG00000211778;Name=TRAV4-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000390426;transcript_support_level=NA;version=2 Chr14