Assign a library

libname n "/folders/myfolders/ngsdata";

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253  ods listing close;ods html5 (id=saspy_internal) file=stdout options(bitmap_mode='inline') device=svg style=HTMLBlue; ods
253! graphics on / outputfmt=png;
NOTE: Writing HTML5(SASPY_INTERNAL) Body file: STDOUT
254  
255  libname n "/folders/myfolders/ngsdata";
NOTE: Libref N was successfully assigned as follows: 
      Engine:        V9 
      Physical Name: /folders/myfolders/ngsdata
256  
257  ods html5 (id=saspy_internal) close;ods listing;

258

Display library member/table names using dictionary.tables

proc sql;

select memname
from dictionary.tables
where libname="N";

quit;
<!DOCTYPE html> SAS Output
Member Name
BIOLOGICAL_REGION
CDS
CHR1
CHR10
CHR11
CHR12
CHR13
CHR14
CHR15
CHR16
CHR17
CHR18
CHR19
CHR2
CHR20
CHR21
CHR22
CHR3
CHR4
CHR5
CHR6
CHR7
CHR8
CHR9
CHROMOSOME
CHROMOSOMES
CHRX
CHRY
C_GENE_SEGMENT
D_GENE_SEGMENT
EXON
FIVE_PRIME_UTR
GENE
GENES
GENES_SCAN_SUBSTR
GENE_REGEX_1
GENE_REGX
GL10
GTF
GTF1
GTF_ATTRIBUTE
GTF_SEQLENGTH
GTF_SEQNAME
J_GENE_SEGMENT
KI2
LNCRNA
LNC_RNA
MIRNA
MRNA
MT
MTGENES
NCRNA
NCRNA_GENE
NCRNA_GENES
NICOTINIC
NIC_ALPHA
NIC_ALPHA_BETA
NIC_BETA
PROBLY
PSEUDOGENE
PSEUDOGENES
PSEUDOGENIC_TRANSCR
RRNA
SCAFFOLD
SCRNA
SNORNA
SNRNA
THREE_PRIME_UTR
TRNA
UNCONFIRMED_TRANSCR
VAULTRNA_PRIMARY_TR
V_GENE_SEGMENT
_TAIL

Display column properties for all the tables/members in a library using dictionary.columns

proc sql outobs=15;

select *
from dictionary.columns
where libname="N";

quit;
<!DOCTYPE html> SAS Output
Library Name Member Name Member Type Column Name Column Type Column Length Column Position Column Number in Table Column Label Column Format Column Informat Column Index Type Order in Key Sequence Extended Type Not NULL? Precision Scale Transcoded?
N BIOLOGICAL_REGION DATA seqid char 3 16 1   $3. $3.   0 char no 0 . yes
N BIOLOGICAL_REGION DATA source char 9 19 2   $9. $9.   0 char no 0 . yes
N BIOLOGICAL_REGION DATA type char 19 28 3   $19. $19.   0 char no 0 . yes
N BIOLOGICAL_REGION DATA start num 8 0 4   BEST12. BEST32.   0 num no 0 . yes
N BIOLOGICAL_REGION DATA end num 8 8 5   BEST12. BEST32.   0 num no 0 . yes
N BIOLOGICAL_REGION DATA score char 9 47 6   $9. $9.   0 char no 0 . yes
N BIOLOGICAL_REGION DATA strand char 3 56 7   $3. $3.   0 char no 0 . yes
N BIOLOGICAL_REGION DATA phase char 3 59 8   $3. $3.   0 char no 0 . yes
N BIOLOGICAL_REGION DATA attribute char 226 62 9   $226. $226.   0 char no 0 . yes
N CDS DATA seqid char 3 16 1   $3. $3.   0 char no 0 . yes
N CDS DATA source char 9 19 2   $9. $9.   0 char no 0 . yes
N CDS DATA type char 19 28 3   $19. $19.   0 char no 0 . yes
N CDS DATA start num 8 0 4   BEST12. BEST32.   0 num no 0 . yes
N CDS DATA end num 8 8 5   BEST12. BEST32.   0 num no 0 . yes
N CDS DATA score char 9 47 6   $9. $9.   0 char no 0 . yes

Display column properties of a particular table in a library using dictionary.columns

proc sql;

select *
from dictionary.columns
where libname="N" and memname="NCRNA";

quit;
<!DOCTYPE html> SAS Output
Library Name Member Name Member Type Column Name Column Type Column Length Column Position Column Number in Table Column Label Column Format Column Informat Column Index Type Order in Key Sequence Extended Type Not NULL? Precision Scale Transcoded?
N NCRNA DATA seqid char 3 16 1   $3. $3.   0 char no 0 . yes
N NCRNA DATA source char 9 19 2   $9. $9.   0 char no 0 . yes
N NCRNA DATA type char 19 28 3   $19. $19.   0 char no 0 . yes
N NCRNA DATA start num 8 0 4   BEST12. BEST32.   0 num no 0 . yes
N NCRNA DATA end num 8 8 5   BEST12. BEST32.   0 num no 0 . yes
N NCRNA DATA score char 9 47 6   $9. $9.   0 char no 0 . yes
N NCRNA DATA strand char 3 56 7   $3. $3.   0 char no 0 . yes
N NCRNA DATA phase char 3 59 8   $3. $3.   0 char no 0 . yes
N NCRNA DATA attribute char 226 62 9   $226. $226.   0 char no 0 . yes

Display only column/variable names of a particular table using dictionary.columns

proc sql;

select name
from dictionary.columns
where libname="N" and memname="NCRNA";

quit;
<!DOCTYPE html> SAS Output
Column Name
seqid
source
type
start
end
score
strand
phase
attribute

A macro to print the 1st 5 observations of a data set

Options

options mcompilenote=ALL symbolgen mprint;

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313  ods listing close;ods html5 (id=saspy_internal) file=stdout options(bitmap_mode='inline') device=svg style=HTMLBlue; ods
313! graphics on / outputfmt=png;
NOTE: Writing HTML5(SASPY_INTERNAL) Body file: STDOUT
314  
315  options mcompilenote=ALL symbolgen mprint;
316  
317  ods html5 (id=saspy_internal) close;ods listing;

318

Compile the macro

This macro will be use later on for creating data driven macro calls.

%macro print_5_obs(data=n.mt, obs=5);

   title "First 5 observations from data set %upcase(&data)";
   proc print data=&data(obs=&obs);  
   run;
   title;
   
%mend print_5_obs;

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320  ods listing close;ods html5 (id=saspy_internal) file=stdout options(bitmap_mode='inline') device=svg style=HTMLBlue; ods
320! graphics on / outputfmt=png;
NOTE: Writing HTML5(SASPY_INTERNAL) Body file: STDOUT
321  
322  %macro print_5_obs(data=n.mt, obs=5);
323  
324     title "First 5 observations from data set %upcase(&data)";
325     proc print data=&data(obs=&obs);
326     run;
327     title;
328  
329  %mend print_5_obs;
NOTE: The macro PRINT_5_OBS completed compilation without errors.
      11 instructions 352 bytes.
330  
331  ods html5 (id=saspy_internal) close;ods listing;

332

Call the macro with default parameters

%print_5_obs()
<!DOCTYPE html> SAS Output

First 5 observations from data set N.MT

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 16569       ID=chromosome:MT;Alias=chrM,J01415.2,NC_012920.1 MT
2 insdc ncRNA_gene 577 647   +   ID=gene:ENSG00000210049;Name=MT-TF;biotype=Mt_tRNA;description=mitochondrially encoded tRNA-Phe (UUU/C) [Source:HGNC Symbol%3BAcc:HGNC:7481];gene_id=ENSG00000210049;logic_name=mt_genbank_import_homo_sapiens;version=1 MT
3 ensembl tRNA 577 647   +   ID=transcript:ENST00000387314;Parent=gene:ENSG00000210049;Name=MT-TF-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387314;transcript_support_level=NA;version=1 MT
4 ensembl exon 577 647   +   Parent=transcript:ENST00000387314;Name=ENSE00001544501;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00001544501;rank=1;version=1 MT
5 insdc ncRNA_gene 648 1601   +   ID=gene:ENSG00000211459;Name=MT-RNR1;biotype=Mt_rRNA;description=mitochondrially encoded 12S rRNA [Source:HGNC Symbol%3BAcc:HGNC:7470];gene_id=ENSG00000211459;logic_name=mt_genbank_import_homo_sapiens;version=2 MT

Data driven macro call using a do loop to display 1st 5 observations of each member of a library

/* This macro will call the previously created macro: %print_5_obs */

%macro lib_print_5_obs(libname);

   proc sql noprint;
   select cats("&libname..",memname)
      into :dsn1-
      from dictionary.tables
      where libname="%upcase(&libname)";
   quit;
   
   %do i=1 %to &sqlobs;
      %print_5_obs(data=&&dsn&i)   
   %end;
   
%mend lib_print_5_obs;

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341  ods listing close;ods html5 (id=saspy_internal) file=stdout options(bitmap_mode='inline') device=svg style=HTMLBlue; ods
341! graphics on / outputfmt=png;
NOTE: Writing HTML5(SASPY_INTERNAL) Body file: STDOUT
342  
343  /* This macro will call the previously created macro: %print_5_obs */
344  
345  %macro lib_print_5_obs(libname);
346  
347     proc sql noprint;
348     select cats("&libname..",memname)
349        into :dsn1-
350        from dictionary.tables
351        where libname="%upcase(&libname)";
352     quit;
353  
354     %do i=1 %to &sqlobs;
355        %print_5_obs(data=&&dsn&i)
356     %end;
357  
358  %mend lib_print_5_obs;
NOTE: The macro LIB_PRINT_5_OBS completed compilation without errors.
      16 instructions 480 bytes.
359  
360  ods html5 (id=saspy_internal) close;ods listing;

361  
%lib_print_5_obs(n)
<!DOCTYPE html> SAS Output

First 5 observations from data set N.BIOLOGICAL_REGION

Obs seqid source type start end score strand phase attribute
1 1   biological_region 10469 11240 1.3e+03     external_name=oe %3D 0.79;logic_name=cpg
2 1   biological_region 10650 10657 0.999 +   logic_name=eponine
3 1   biological_region 10655 10657 0.999 -   logic_name=eponine
4 1   biological_region 10678 10687 0.999 +   logic_name=eponine
5 1   biological_region 10681 10688 0.999 -   logic_name=eponine

First 5 observations from data set N.CDS

Obs seqid source type start end score strand phase attribute
1 1 havana CDS 65565 65573   + 0 ID=CDS:ENSP00000493376;Parent=transcript:ENST00000641515;protein_id=ENSP00000493376
2 1 havana CDS 69037 70008   + 0 ID=CDS:ENSP00000493376;Parent=transcript:ENST00000641515;protein_id=ENSP00000493376
3 1 ensembl CDS 69091 70008   + 0 ID=CDS:ENSP00000334393;Parent=transcript:ENST00000335137;protein_id=ENSP00000334393
4 1 ensembl_h CDS 450740 451678   - 0 ID=CDS:ENSP00000409316;Parent=transcript:ENST00000426406;protein_id=ENSP00000409316
5 1 ensembl_h CDS 685716 686654   - 0 ID=CDS:ENSP00000329982;Parent=transcript:ENST00000332831;protein_id=ENSP00000329982

First 5 observations from data set N.CHR1

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11 Chr1
2   biological_region 10469 11240 1.3e+03     external_name=oe %3D 0.79;logic_name=cpg Chr1
3   biological_region 10650 10657 0.999 +   logic_name=eponine Chr1
4   biological_region 10655 10657 0.999 -   logic_name=eponine Chr1
5   biological_region 10678 10687 0.999 +   logic_name=eponine Chr1

First 5 observations from data set N.CHR10

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 133797422       ID=chromosome:10;Alias=CM000672.2,chr10,NC_000010.11 Chr10
2   biological_region 10494 12018 690     external_name=oe %3D 0.65;logic_name=cpg Chr10
3   biological_region 11624 11698 1 -   external_name=rank %3D 1;logic_name=firstef Chr10
4   biological_region 11774 12029 1 +   external_name=rank %3D 1;logic_name=firstef Chr10
5 havana ncRNA_gene 14061 16544   -   ID=gene:ENSG00000260370;Name=AC215217.1;biotype=lncRNA;description=novel transcript;gene_id=ENSG00000260370;logic_name=havana_homo_sapiens;version=1 Chr10

First 5 observations from data set N.CHR11

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 135086622       ID=chromosome:11;Alias=CM000673.2,chr11,NC_000011.10 Chr11
2 havana pseudogene 75780 76143   +   ID=gene:ENSG00000253826;Name=WBP1LP10;biotype=unprocessed_pseudogene;description=WBP1L pseudogene 10 [Source:HGNC Symbol%3BAcc:HGNC:51470];gene_id=ENSG00000253826;logic_name=havana_homo_sapiens;version=1 Chr11
3 havana pseudogenic_transcr 75780 76143   +   ID=transcript:ENST00000519787;Parent=gene:ENSG00000253826;Name=WBP1LP10-201;biotype=unprocessed_pseudogene;tag=basic;transcript_id=ENST00000519787;transcript_support_level=NA;version=1 Chr11
4 havana exon 75780 76143   +   Parent=transcript:ENST00000519787;Name=ENSE00002139035;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002139035;rank=1;version=1 Chr11
5 havana pseudogene 86649 87586   -   ID=gene:ENSG00000224777;Name=OR4F2P;biotype=unprocessed_pseudogene;description=olfactory receptor family 4 subfamily F member 2 pseudogene [Source:HGNC Symbol%3BAcc:HGNC:8299];gene_id=ENSG00000224777;logic_name=havana_homo_sap Chr11

First 5 observations from data set N.CHR12

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 133275309       ID=chromosome:12;Alias=CM000674.2,chr12,NC_000012.12 Chr12
2   biological_region 10588 11371 1.38e+03     external_name=oe %3D 0.79;logic_name=cpg Chr12
3   biological_region 10747 10752 0.999 +   logic_name=eponine Chr12
4   biological_region 10775 10783 0.999 +   logic_name=eponine Chr12
5   biological_region 10778 10783 0.999 -   logic_name=eponine Chr12

First 5 observations from data set N.CHR13

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 114364328       ID=chromosome:13;Alias=CM000675.2,chr13,NC_000013.11 Chr13
2 havana pseudogene 18174010 18178465   -   ID=gene:ENSG00000279924;Name=AL356585.4;biotype=unprocessed_pseudogene;description=novel ankyrin repeat domain-containing protein pseudogene;gene_id=ENSG00000279924;logic_name=havana_homo_sapiens;version=1 Chr13
3 havana pseudogenic_transcr 18174010 18178465   -   ID=transcript:ENST00000623078;Parent=gene:ENSG00000279924;Name=AL356585.4-201;biotype=unprocessed_pseudogene;tag=basic;transcript_id=ENST00000623078;transcript_support_level=NA;version=1 Chr13
4 havana exon 18174010 18174103   -   Parent=transcript:ENST00000623078;Name=ENSE00003759026;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003759026;rank=4;version=1 Chr13
5 havana exon 18174442 18174512   -   Parent=transcript:ENST00000623078;Name=ENSE00003758363;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003758363;rank=3;version=1 Chr13

First 5 observations from data set N.CHR14

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 107043718       ID=chromosome:14;Alias=CM000676.2,chr14,NC_000014.9 Chr14
2   biological_region 16024911 16025410 131     external_name=oe %3D 0.62;logic_name=cpg Chr14
3   biological_region 16029598 16030487 155     external_name=oe %3D 0.70;logic_name=cpg Chr14
4   biological_region 16041628 16042083 103     external_name=oe %3D 0.84;logic_name=cpg Chr14
5   biological_region 16052689 16053953 644     external_name=oe %3D 0.82;logic_name=cpg Chr14

First 5 observations from data set N.CHR15

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 101991189       ID=chromosome:15;Alias=CM000677.2,chr15,NC_000015.10 Chr15
2 havana pseudogene 19878555 19887814   +   ID=gene:ENSG00000215567;Name=AC138701.1;biotype=unprocessed_pseudogene;description=ankyrin repeat domain 30B (ANKRD30B) pseudogene;gene_id=ENSG00000215567;logic_name=havana_homo_sapiens;version=5 Chr15
3 havana pseudogenic_transcr 19878555 19887814   +   ID=transcript:ENST00000524329;Parent=gene:ENSG00000215567;Name=AC138701.1-201;biotype=unprocessed_pseudogene;tag=basic;transcript_id=ENST00000524329;transcript_support_level=NA;version=1 Chr15
4 havana exon 19878555 19878668   +   Parent=transcript:ENST00000524329;Name=ENSE00002133693;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002133693;rank=1;version=1 Chr15
5 havana exon 19878831 19879004   +   Parent=transcript:ENST00000524329;Name=ENSE00003544224;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003544224;rank=2;version=1 Chr15

First 5 observations from data set N.CHR16

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 90338345       ID=chromosome:16;Alias=CM000678.2,chr16,NC_000016.10 Chr16
2   biological_region 10400 10921 685     external_name=oe %3D 0.81;logic_name=cpg Chr16
3   biological_region 10645 10647 0.999 -   logic_name=eponine Chr16
4 havana pseudogene 11555 14090   +   ID=gene:ENSG00000233614;Name=DDX11L10;biotype=transcribed_unprocessed_pseudogene;description=DEAD/H-box helicase 11 like 10 [Source:HGNC Symbol%3BAcc:HGNC:14125];gene_id=ENSG00000233614;logic_name=havana_homo_sapiens;version=6 Chr16
5 havana lnc_RNA 11555 14090   +   ID=transcript:ENST00000513886;Parent=gene:ENSG00000233614;Name=DDX11L10-202;biotype=lncRNA;tag=basic;transcript_id=ENST00000513886;transcript_support_level=1;version=1 Chr16

First 5 observations from data set N.CHR17

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 83257441       ID=chromosome:17;Alias=CM000679.2,chr17,NC_000017.11 Chr17
2   biological_region 61680 61746 0.995 -   external_name=rank %3D 1;logic_name=firstef Chr17
3   biological_region 62925 63732 0.917 -   external_name=rank %3D 1;logic_name=firstef Chr17
4 havana ncRNA_gene 64099 76866   -   ID=gene:ENSG00000280279;Name=AC240565.2;biotype=lncRNA;description=novel transcript;gene_id=ENSG00000280279;logic_name=havana_homo_sapiens;version=1 Chr17
5 havana lnc_RNA 64099 76866   -   ID=transcript:ENST00000623180;Parent=gene:ENSG00000280279;Name=AC240565.2-201;biotype=lncRNA;tag=basic;transcript_id=ENST00000623180;transcript_support_level=5;version=1 Chr17

First 5 observations from data set N.CHR18

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 80373285       ID=chromosome:18;Alias=CM000680.2,chr18,NC_000018.10 Chr18
2   biological_region 10690 12372 1.18e+03     external_name=oe %3D 0.67;logic_name=cpg Chr18
3   biological_region 10979 10980 0.999 +   logic_name=eponine Chr18
4   biological_region 10988 10991 0.999 +   logic_name=eponine Chr18
5   biological_region 10997 11001 0.999 +   logic_name=eponine Chr18

First 5 observations from data set N.CHR19

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 58617616       ID=chromosome:19;Alias=CM000681.2,chr19,NC_000019.10 Chr19
2 havana pseudogene 60951 71626   -   ID=gene:ENSG00000282458;Name=WASH5P;biotype=transcribed_processed_pseudogene;description=WASP family homolog 5%2C pseudogene [Source:HGNC Symbol%3BAcc:HGNC:33884];gene_id=ENSG00000282458;logic_name=havana_homo_sapiens;version= Chr19
3 havana lnc_RNA 60951 70976   -   ID=transcript:ENST00000632506;Parent=gene:ENSG00000282458;Name=WASH5P-206;biotype=lncRNA;tag=basic;transcript_id=ENST00000632506;transcript_support_level=1;version=1 Chr19
4 havana exon 60951 61894   -   Parent=transcript:ENST00000632506;Name=ENSE00003783010;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003783010;rank=3;version=1 Chr19
5 havana exon 66346 66499   -   Parent=transcript:ENST00000632506;Name=ENSE00003783498;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003783498;rank=2;version=1 Chr19

First 5 observations from data set N.CHR2

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 242193529       ID=chromosome:2;Alias=CM000664.2,chr2,NC_000002.12 Chr2
2   biological_region 10379 11665 1.54e+03     external_name=oe %3D 0.77;logic_name=cpg Chr2
3   biological_region 10846 10850 0.999 +   logic_name=eponine Chr2
4   biological_region 10870 10870 0.999 -   logic_name=eponine Chr2
5   biological_region 10893 10900 0.999 +   logic_name=eponine Chr2

First 5 observations from data set N.CHR20

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 64444167       ID=chromosome:20;Alias=CM000682.2,chr20,NC_000020.11 Chr20
2 ensembl_h gene 87250 97094   +   ID=gene:ENSG00000178591;Name=DEFB125;biotype=protein_coding;description=defensin beta 125 [Source:HGNC Symbol%3BAcc:HGNC:18105];gene_id=ENSG00000178591;logic_name=ensembl_havana_gene_homo_sapiens;version=7 Chr20
3 havana lnc_RNA 87250 97094   +   ID=transcript:ENST00000608838;Parent=gene:ENSG00000178591;Name=DEFB125-202;biotype=lncRNA;transcript_id=ENST00000608838;transcript_support_level=2;version=1 Chr20
4 havana exon 87250 87359   +   Parent=transcript:ENST00000608838;Name=ENSE00003702629;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003702629;rank=1;version=1 Chr20
5 havana exon 96005 97094   +   Parent=transcript:ENST00000608838;Name=ENSE00003705060;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003705060;rank=2;version=1 Chr20

First 5 observations from data set N.CHR21

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 46709983       ID=chromosome:21;Alias=CM000683.2,chr21,NC_000021.9 Chr21
2 havana gene 5011799 5017145   +   ID=gene:ENSG00000279493;Name=FP565260.4;biotype=protein_coding;description=novel protein%2C similar to DNA (cytosine-5-)-methyltransferase 3-like DNMT3L;gene_id=ENSG00000279493;logic_name=havana_homo_sapiens;version=1 Chr21
3 havana mRNA 5011799 5017145   +   ID=transcript:ENST00000624081;Parent=gene:ENSG00000279493;Name=FP565260.4-201;biotype=protein_coding;tag=basic;transcript_id=ENST00000624081;transcript_support_level=5;version=1 Chr21
4 havana exon 5011799 5011874   +   Parent=transcript:ENST00000624081;Name=ENSE00003760288;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=ENSE00003760288;rank=1;version=1 Chr21
5 havana CDS 5011799 5011874   + 0 ID=CDS:ENSP00000485664;Parent=transcript:ENST00000624081;protein_id=ENSP00000485664 Chr21

First 5 observations from data set N.CHR22

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 50818468       ID=chromosome:22;Alias=CM000684.2,chr22,NC_000022.11 Chr22
2   biological_region 10525487 10527570 2.94e+03     external_name=oe %3D 0.82;logic_name=cpg Chr22
3   biological_region 10525565 10525568 0.999 -   logic_name=eponine Chr22
4   biological_region 10525587 10525588 0.999 -   logic_name=eponine Chr22
5   biological_region 10525602 10525607 0.999 -   logic_name=eponine Chr22

First 5 observations from data set N.CHR3

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 198295559       ID=chromosome:3;Alias=CM000665.2,chr3,NC_000003.12 Chr3
2   biological_region 10917 11891 2.75e+03     external_name=oe %3D 0.82;logic_name=cpg Chr3
3   biological_region 11024 11029 0.999 +   logic_name=eponine Chr3
4   biological_region 11049 11059 0.999 +   logic_name=eponine Chr3
5   biological_region 11054 11059 0.999 -   logic_name=eponine Chr3

First 5 observations from data set N.CHR4

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 190214555       ID=chromosome:4;Alias=CM000666.2,chr4,NC_000004.12 Chr4
2   biological_region 10297 11723 3.11e+03     external_name=oe %3D 0.88;logic_name=cpg Chr4
3   biological_region 10505 10514 0.999 +   logic_name=eponine Chr4
4   biological_region 10534 10544 0.999 +   logic_name=eponine Chr4
5   biological_region 10578 10581 0.999 +   logic_name=eponine Chr4

First 5 observations from data set N.CHR5

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 181538259       ID=chromosome:5;Alias=CM000667.2,chr5,NC_000005.10 Chr5
2   biological_region 12284 13259 2.08e+03     external_name=oe %3D 0.80;logic_name=cpg Chr5
3   biological_region 12486 12491 0.999 +   logic_name=eponine Chr5
4   biological_region 12511 12520 0.999 +   logic_name=eponine Chr5
5   biological_region 12515 12521 0.999 -   logic_name=eponine Chr5

First 5 observations from data set N.CHR6

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 170805979       ID=chromosome:6;Alias=CM000668.2,chr6,NC_000006.12 Chr6
2 havana pseudogene 95124 95454   +   ID=gene:ENSG00000271530;Name=WBP1LP12;biotype=processed_pseudogene;description=WBP1L pseudogene 12 [Source:HGNC Symbol%3BAcc:HGNC:51472];gene_id=ENSG00000271530;logic_name=havana_homo_sapiens;version=1 Chr6
3 havana pseudogenic_transcr 95124 95454   +   ID=transcript:ENST00000604449;Parent=gene:ENSG00000271530;Name=WBP1LP12-201;biotype=processed_pseudogene;tag=basic;transcript_id=ENST00000604449;transcript_support_level=NA;version=1 Chr6
4 havana exon 95124 95454   +   Parent=transcript:ENST00000604449;Name=ENSE00003496393;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003496393;rank=1;version=1 Chr6
5 havana pseudogene 105919 106856   -   ID=gene:ENSG00000220212;Name=OR4F1P;biotype=unprocessed_pseudogene;description=olfactory receptor family 4 subfamily F member 1 pseudogene [Source:HGNC Symbol%3BAcc:HGNC:8298];gene_id=ENSG00000220212;logic_name=havana_homo_sap Chr6

First 5 observations from data set N.CHR7

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 159345973       ID=chromosome:7;Alias=CM000669.2,chr7,NC_000007.14 Chr7
2 havana ncRNA_gene 12704 27234   +   ID=gene:ENSG00000283061;Name=AC215522.3;biotype=lncRNA;description=novel transcript;gene_id=ENSG00000283061;logic_name=havana_homo_sapiens;version=1 Chr7
3 havana lnc_RNA 12704 27199   +   ID=transcript:ENST00000635602;Parent=gene:ENSG00000283061;Name=AC215522.3-201;biotype=lncRNA;tag=basic;transcript_id=ENST00000635602;transcript_support_level=5;version=1 Chr7
4 havana exon 12704 12822   +   Parent=transcript:ENST00000635602;Name=ENSE00003788848;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003788848;rank=1;version=1 Chr7
5 havana exon 26965 27199   +   Parent=transcript:ENST00000635602;Name=ENSE00003789861;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003789861;rank=2;version=1 Chr7

First 5 observations from data set N.CHR8

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 145138636       ID=chromosome:8;Alias=CM000670.2,chr8,NC_000008.11 Chr8
2 havana pseudogene 64091 64320   -   ID=gene:ENSG00000253620;Name=AC144568.1;biotype=processed_pseudogene;description=family with sequence similarity 41%2C member C (FAM41C) pseudogene;gene_id=ENSG00000253620;logic_name=havana_homo_sapiens;version=2 Chr8
3 havana pseudogenic_transcr 64091 64320   -   ID=transcript:ENST00000520139;Parent=gene:ENSG00000253620;Name=AC144568.1-201;biotype=processed_pseudogene;tag=basic;transcript_id=ENST00000520139;transcript_support_level=NA;version=2 Chr8
4 havana exon 64091 64175   -   Parent=transcript:ENST00000520139;Name=ENSE00002126516;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002126516;rank=2;version=2 Chr8
5 havana exon 64269 64320   -   Parent=transcript:ENST00000520139;Name=ENSE00002132061;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002132061;rank=1;version=2 Chr8

First 5 observations from data set N.CHR9

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 138394717       ID=chromosome:9;Alias=CM000671.2,chr9,NC_000009.12 Chr9
2   biological_region 10817 11353 724     external_name=oe %3D 0.82;logic_name=cpg Chr9
3   biological_region 11019 11021 0.999 +   logic_name=eponine Chr9
4   biological_region 11047 11049 0.999 +   logic_name=eponine Chr9
5   biological_region 11068 11070 0.999 -   logic_name=eponine Chr9

First 5 observations from data set N.CHROMOSOME

Obs seqid source type start end score strand phase attribute
1 1 Ensembl chromosome 1 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11
2 10 Ensembl chromosome 1 133797422       ID=chromosome:10;Alias=CM000672.2,chr10,NC_000010.11
3 11 Ensembl chromosome 1 135086622       ID=chromosome:11;Alias=CM000673.2,chr11,NC_000011.10
4 12 Ensembl chromosome 1 133275309       ID=chromosome:12;Alias=CM000674.2,chr12,NC_000012.12
5 13 Ensembl chromosome 1 114364328       ID=chromosome:13;Alias=CM000675.2,chr13,NC_000013.11

First 5 observations from data set N.CHROMOSOMES

Obs seqid source type start end score strand phase attribute
1 1 Ensembl chromosome 1 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11
2 10 Ensembl chromosome 1 133797422       ID=chromosome:10;Alias=CM000672.2,chr10,NC_000010.11
3 11 Ensembl chromosome 1 135086622       ID=chromosome:11;Alias=CM000673.2,chr11,NC_000011.10
4 12 Ensembl chromosome 1 133275309       ID=chromosome:12;Alias=CM000674.2,chr12,NC_000012.12
5 13 Ensembl chromosome 1 114364328       ID=chromosome:13;Alias=CM000675.2,chr13,NC_000013.11

First 5 observations from data set N.CHRX

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 156040895       ID=chromosome:X;Alias=CM000685.2,chrX,NC_000023.11 ChrX
2   biological_region 13291 14128 1 -   external_name=rank %3D 1;logic_name=firstef ChrX
3   biological_region 13315 14128 1 -   external_name=rank %3D 2;logic_name=firstef ChrX
4   biological_region 14036 14793 575     external_name=oe %3D 1.04;logic_name=cpg ChrX
5   biological_region 14495 14632 1 +   external_name=rank %3D 1;logic_name=firstef ChrX

First 5 observations from data set N.CHRY

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 2781480 56887902       ID=chromosome:Y;Alias=CM000686.2,chrY,NC_000024.10 ChrY
2 ensembl ncRNA_gene 2784749 2784853   +   ID=gene:ENSG00000251841;Name=RNU6-1334P;biotype=snRNA;description=RNA%2C U6 small nuclear 1334%2C pseudogene [Source:HGNC Symbol%3BAcc:HGNC:48297];gene_id=ENSG00000251841;logic_name=ncrna_homo_sapiens;version=1 ChrY
3 ensembl snRNA 2784749 2784853   +   ID=transcript:ENST00000516032;Parent=gene:ENSG00000251841;Name=RNU6-1334P-201;biotype=snRNA;tag=basic;transcript_id=ENST00000516032;transcript_support_level=NA;version=1 ChrY
4 ensembl exon 2784749 2784853   +   Parent=transcript:ENST00000516032;Name=ENSE00002088309;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002088309;rank=1;version=1 ChrY
5 ensembl_h gene 2786855 2787682   -   ID=gene:ENSG00000184895;Name=SRY;biotype=protein_coding;description=sex determining region Y [Source:HGNC Symbol%3BAcc:HGNC:11311];gene_id=ENSG00000184895;logic_name=ensembl_havana_gene_homo_sapiens;version=8 ChrY

First 5 observations from data set N.C_GENE_SEGMENT

Obs seqid source type start end score strand phase attribute
1 14 havana C_gene_segment 22462932 22465787   +   ID=transcript:ENST00000390477;Parent=gene:ENSG00000211829;Name=TRDC-201;biotype=TR_C_gene;tag=basic;transcript_id=ENST00000390477;transcript_support_level=NA;version=2
2 14 havana C_gene_segment 22547506 22552156   +   ID=transcript:ENST00000611116;Parent=gene:ENSG00000277734;Name=TRAC-201;biotype=TR_C_gene;tag=basic;transcript_id=ENST00000611116;transcript_support_level=NA (assigned to previous version 1);version=2
3 14 havana C_gene_segment 105583731 105588395   -   ID=transcript:ENST00000497872;Parent=gene:ENSG00000211890;Name=IGHA2-202;biotype=IG_C_gene;tag=basic;transcript_id=ENST00000497872;transcript_support_level=1 (assigned to previous version 3);version=4
4 14 havana C_gene_segment 105586889 105588395   -   ID=transcript:ENST00000390539;Parent=gene:ENSG00000211890;Name=IGHA2-201;biotype=IG_C_gene;transcript_id=ENST00000390539;transcript_support_level=NA;version=2
5 14 havana C_gene_segment 105597691 105601728   -   ID=transcript:ENST00000641420;Parent=gene:ENSG00000211891;Name=IGHE-202;biotype=IG_C_gene;tag=basic;transcript_id=ENST00000641420;version=1

First 5 observations from data set N.D_GENE_SEGMENT

Obs seqid source type start end score strand phase attribute
1 14 havana D_gene_segment 22438547 22438554   +   ID=transcript:ENST00000415118;Parent=gene:ENSG00000223997;Name=TRDD1-201;biotype=TR_D_gene;tag=basic;transcript_id=ENST00000415118;transcript_support_level=NA;version=1
2 14 havana D_gene_segment 22439007 22439015   +   ID=transcript:ENST00000434970;Parent=gene:ENSG00000237235;Name=TRDD2-201;biotype=TR_D_gene;tag=basic;transcript_id=ENST00000434970;transcript_support_level=NA;version=2
3 14 havana D_gene_segment 22449113 22449125   +   ID=transcript:ENST00000448914;Parent=gene:ENSG00000228985;Name=TRDD3-201;biotype=TR_D_gene;tag=basic;transcript_id=ENST00000448914;transcript_support_level=NA;version=1
4 14 havana D_gene_segment 105865551 105865561   -   ID=transcript:ENST00000439842;Parent=gene:ENSG00000236597;Name=IGHD7-27-201;biotype=IG_D_gene;tag=basic;transcript_id=ENST00000439842;transcript_support_level=NA;version=1
5 14 havana D_gene_segment 105881034 105881053   -   ID=transcript:ENST00000390567;Parent=gene:ENSG00000211907;Name=IGHD1-26-201;biotype=IG_D_gene;tag=basic;transcript_id=ENST00000390567;transcript_support_level=NA;version=1

First 5 observations from data set N.EXON

Obs seqid source type start end score strand phase attribute
1 1 havana exon 11869 12227   +   Parent=transcript:ENST00000456328;Name=ENSE00002234944;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002234944;rank=1;version=1
2 1 havana exon 12613 12721   +   Parent=transcript:ENST00000456328;Name=ENSE00003582793;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003582793;rank=2;version=1
3 1 havana exon 13221 14409   +   Parent=transcript:ENST00000456328;Name=ENSE00002312635;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002312635;rank=3;version=1
4 1 havana exon 12010 12057   +   Parent=transcript:ENST00000450305;Name=ENSE00001948541;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00001948541;rank=1;version=1
5 1 havana exon 12179 12227   +   Parent=transcript:ENST00000450305;Name=ENSE00001671638;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00001671638;rank=2;version=2

First 5 observations from data set N.FIVE_PRIME_UTR

Obs seqid source type start end score strand phase attribute
1 1 havana five_prime_UTR 65419 65433   +   Parent=transcript:ENST00000641515
2 1 havana five_prime_UTR 65520 65564   +   Parent=transcript:ENST00000641515
3 1 ensembl five_prime_UTR 69055 69090   +   Parent=transcript:ENST00000335137
4 1 ensembl_h five_prime_UTR 451679 451697   -   Parent=transcript:ENST00000426406
5 1 ensembl_h five_prime_UTR 686655 686673   -   Parent=transcript:ENST00000332831

First 5 observations from data set N.GENE

Obs seqid source type start end score strand phase attribute
1 1 ensembl_h gene 65419 71585   +   ID=gene:ENSG00000186092;Name=OR4F5;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 5 [Source:HGNC Symbol%3BAcc:HGNC:14825];gene_id=ENSG00000186092;logic_name=ensembl_havana_gene_homo_sapiens;v
2 1 ensembl_h gene 450703 451697   -   ID=gene:ENSG00000284733;Name=OR4F29;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 29 [Source:HGNC Symbol%3BAcc:HGNC:31275];gene_id=ENSG00000284733;logic_name=ensembl_havana_gene_homo_sapiens
3 1 ensembl_h gene 685679 686673   -   ID=gene:ENSG00000284662;Name=OR4F16;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 16 [Source:HGNC Symbol%3BAcc:HGNC:15079];gene_id=ENSG00000284662;logic_name=ensembl_havana_gene_homo_sapiens
4 1 ensembl_h gene 923928 944581   +   ID=gene:ENSG00000187634;Name=SAMD11;biotype=protein_coding;description=sterile alpha motif domain containing 11 [Source:HGNC Symbol%3BAcc:HGNC:28706];gene_id=ENSG00000187634;logic_name=ensembl_havana_gene_homo_sapiens;version=
5 1 ensembl_h gene 944203 959309   -   ID=gene:ENSG00000188976;Name=NOC2L;biotype=protein_coding;description=NOC2 like nucleolar associated transcriptional repressor [Source:HGNC Symbol%3BAcc:HGNC:24517];gene_id=ENSG00000188976;logic_name=ensembl_havana_gene_homo_s

First 5 observations from data set N.GENES

Obs seqid source type start end score strand phase ID Name Biotype Description Gene_id Logic_name length log_length
1 1 ensembl_h gene 65419 71585   +   ENSG00000186092 OR4F5 protein_coding olfactory receptor family 4 subfamily F member 5 ENSG00000186092 ensembl_havana_gene_homo_sapiens 6167 8.72697
2 1 ensembl_h gene 450703 451697   -   ENSG00000284733 OR4F29 protein_coding olfactory receptor family 4 subfamily F member 29 ENSG00000284733 ensembl_havana_gene_homo_sapiens 995 6.90274
3 1 ensembl_h gene 685679 686673   -   ENSG00000284662 OR4F16 protein_coding olfactory receptor family 4 subfamily F member 16 ENSG00000284662 ensembl_havana_gene_homo_sapiens 995 6.90274
4 1 ensembl_h gene 923928 944581   +   ENSG00000187634 SAMD11 protein_coding sterile alpha motif domain containing 11 ENSG00000187634 ensembl_havana_gene_homo_sapiens 20654 9.93566
5 1 ensembl_h gene 944203 959309   -   ENSG00000188976 NOC2L protein_coding NOC2 like nucleolar associated transcriptional repressor ENSG00000188976 ensembl_havana_gene_homo_s 15107 9.62291

First 5 observations from data set N.GENES_SCAN_SUBSTR

Obs seqid source type start end score strand phase ID Name Biotype Description Gene_id Logic_name
1 1 ensembl_h gene 65419 71585   +   ENSG00000186092 OR4F5 protein_coding olfactory receptor family 4 subfamily F member 5 ENSG00000186092 ensembl_havana_gene_homo_sapiens
2 1 ensembl_h gene 450703 451697   -   ENSG00000284733 OR4F29 protein_coding olfactory receptor family 4 subfamily F member 29 ENSG00000284733 ensembl_havana_gene_homo_sapiens
3 1 ensembl_h gene 685679 686673   -   ENSG00000284662 OR4F16 protein_coding olfactory receptor family 4 subfamily F member 16 ENSG00000284662 ensembl_havana_gene_homo_sapiens
4 1 ensembl_h gene 923928 944581   +   ENSG00000187634 SAMD11 protein_coding sterile alpha motif domain containing 11 ENSG00000187634 ensembl_havana_gene_homo_sapiens
5 1 ensembl_h gene 944203 959309   -   ENSG00000188976 NOC2L protein_coding NOC2 like nucleolar associated transcriptional repressor ENSG00000188976 ensembl_havana_gene_homo_s

First 5 observations from data set N.GENE_REGEX_1

Obs seqid source type start end score strand phase attribute PATTERN LENGTH gene_name STRING
1 1 ensembl_h gene . 71585   +   ID=gene:ENSG00000186092;Name=OR4F5;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 5 [Source:HGNC Symbol%3BAcc:HGNC:14825];gene_id=ENSG00000186092;logic_name=ensembl_havana_gene_homo_sapiens;v . .   .
2 1 ensembl_h gene . 451697   -   ID=gene:ENSG00000284733;Name=OR4F29;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 29 [Source:HGNC Symbol%3BAcc:HGNC:31275];gene_id=ENSG00000284733;logic_name=ensembl_havana_gene_homo_sapiens . .   .
3 1 ensembl_h gene . 686673   -   ID=gene:ENSG00000284662;Name=OR4F16;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 16 [Source:HGNC Symbol%3BAcc:HGNC:15079];gene_id=ENSG00000284662;logic_name=ensembl_havana_gene_homo_sapiens . .   .
4 1 ensembl_h gene . 944581   +   ID=gene:ENSG00000187634;Name=SAMD11;biotype=protein_coding;description=sterile alpha motif domain containing 11 [Source:HGNC Symbol%3BAcc:HGNC:28706];gene_id=ENSG00000187634;logic_name=ensembl_havana_gene_homo_sapiens;version= . .   .
5 1 ensembl_h gene . 959309   -   ID=gene:ENSG00000188976;Name=NOC2L;biotype=protein_coding;description=NOC2 like nucleolar associated transcriptional repressor [Source:HGNC Symbol%3BAcc:HGNC:24517];gene_id=ENSG00000188976;logic_name=ensembl_havana_gene_homo_s . .   .

First 5 observations from data set N.GENE_REGX

Obs seqid source type start end score strand phase attribute id gene_name d_name description
1 1 ensembl_h gene 65419 71585   +   ID=gene:ENSG00000186092;Name=OR4F5;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 5 [Source:HGNC Symbol%3BAcc:HGNC:14825];gene_id=ENSG00000186092;logic_name=ensembl_havana_gene_homo_sapiens;v ENSG00000186092 OR4F5   olfactory receptor family 4 subfamily F member 5
2 1 ensembl_h gene 450703 451697   -   ID=gene:ENSG00000284733;Name=OR4F29;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 29 [Source:HGNC Symbol%3BAcc:HGNC:31275];gene_id=ENSG00000284733;logic_name=ensembl_havana_gene_homo_sapiens ENSG00000284733 OR4F29   olfactory receptor family 4 subfamily F member 29
3 1 ensembl_h gene 685679 686673   -   ID=gene:ENSG00000284662;Name=OR4F16;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 16 [Source:HGNC Symbol%3BAcc:HGNC:15079];gene_id=ENSG00000284662;logic_name=ensembl_havana_gene_homo_sapiens ENSG00000284662 OR4F16   olfactory receptor family 4 subfamily F member 16
4 1 ensembl_h gene 923928 944581   +   ID=gene:ENSG00000187634;Name=SAMD11;biotype=protein_coding;description=sterile alpha motif domain containing 11 [Source:HGNC Symbol%3BAcc:HGNC:28706];gene_id=ENSG00000187634;logic_name=ensembl_havana_gene_homo_sapiens;version= ENSG00000187634 SAMD11   sterile alpha motif domain containing 11
5 1 ensembl_h gene 944203 959309   -   ID=gene:ENSG00000188976;Name=NOC2L;biotype=protein_coding;description=NOC2 like nucleolar associated transcriptional repressor [Source:HGNC Symbol%3BAcc:HGNC:24517];gene_id=ENSG00000188976;logic_name=ensembl_havana_gene_homo_s ENSG00000188976 NOC2L   NOC2 like nucleolar associated transcriptional repressor

First 5 observations from data set N.GL10

Obs source type start end score strand phase attribute SeqName
1 Ensembl scaffold 1 209709       ID=scaffold:GL000008.2;Alias=chr4_GL000008v2_random,NT_113793.3 GL10
2   biological_region 83284 83394 1 -   external_name=rank %3D 1;logic_name=firstef GL10
3   biological_region 83318 83804 342     external_name=oe %3D 0.85;logic_name=cpg GL10
4   biological_region 83763 84145 1 +   external_name=rank %3D 1;logic_name=firstef GL10
5 Ensembl scaffold 1 201709       ID=scaffold:GL000009.2;Alias=chr14_GL000009v2_random,NT_113796.3 GL10

First 5 observations from data set N.GTF

Obs seqid source type start end score strand phase attribute SeqName
1 1 Ensembl chromosome 1 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11 Chr1
2 1   biological_region 10469 11240 1.3e+03     external_name=oe %3D 0.79;logic_name=cpg Chr1
3 1   biological_region 10650 10657 0.999 +   logic_name=eponine Chr1
4 1   biological_region 10655 10657 0.999 -   logic_name=eponine Chr1
5 1   biological_region 10678 10687 0.999 +   logic_name=eponine Chr1

First 5 observations from data set N.GTF1

Obs VAR1 seqid source type start end score strand phase attribute
1 1 1 Ensembl chromosome 1 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11
2 2 1   biological_region 10469 11240 1.3e+03     external_name=oe %3D 0.79;logic_name=cpg
3 3 1   biological_region 10650 10657 0.999 +   logic_name=eponine
4 4 1   biological_region 10655 10657 0.999 -   logic_name=eponine
5 5 1   biological_region 10678 10687 0.999 +   logic_name=eponine

First 5 observations from data set N.GTF_ATTRIBUTE

Obs attribute
1 ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11
2 external_name=oe %3D 0.79;logic_name=cpg
3 logic_name=eponine
4 logic_name=eponine
5 logic_name=eponine

First 5 observations from data set N.GTF_SEQLENGTH

Obs seqid source type start end seq_length score strand phase attribute
1 1 Ensembl chromosome 1 248956422 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11
2 1   biological_region 10469 11240 772 1.3e+03     external_name=oe %3D 0.79;logic_name=cpg
3 1   biological_region 10650 10657 8 0.999 +   logic_name=eponine
4 1   biological_region 10655 10657 3 0.999 -   logic_name=eponine
5 1   biological_region 10678 10687 10 0.999 +   logic_name=eponine

First 5 observations from data set N.GTF_SEQNAME

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11 Chr1
2   biological_region 10469 11240 1.3e+03     external_name=oe %3D 0.79;logic_name=cpg Chr1
3   biological_region 10650 10657 0.999 +   logic_name=eponine Chr1
4   biological_region 10655 10657 0.999 -   logic_name=eponine Chr1
5   biological_region 10678 10687 0.999 +   logic_name=eponine Chr1

First 5 observations from data set N.J_GENE_SEGMENT

Obs seqid source type start end score strand phase attribute
1 14 havana J_gene_segment 22450089 22450139   +   ID=transcript:ENST00000390473;Parent=gene:ENSG00000211825;Name=TRDJ1-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390473;transcript_support_level=NA;version=1
2 14 havana J_gene_segment 22455249 22455296   +   ID=transcript:ENST00000390474;Parent=gene:ENSG00000211826;Name=TRDJ4-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390474;transcript_support_level=NA;version=1
3 14 havana J_gene_segment 22456689 22456742   +   ID=transcript:ENST00000390475;Parent=gene:ENSG00000211827;Name=TRDJ2-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390475;transcript_support_level=NA;version=1
4 14 havana J_gene_segment 22459098 22459156   +   ID=transcript:ENST00000390476;Parent=gene:ENSG00000211828;Name=TRDJ3-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390476;transcript_support_level=NA;version=1
5 14 havana J_gene_segment 22475316 22475375   +   ID=transcript:ENST00000390479;Parent=gene:ENSG00000211831;Name=TRAJ61-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390479;transcript_support_level=NA;version=2

First 5 observations from data set N.KI2

Obs source type start end score strand phase attribute SeqName
1 Ensembl scaffold 1 2274       ID=scaffold:KI270302.1;Alias=chrUn_KI270302v1,NT_187396.1 KI2
2 Ensembl scaffold 1 1942       ID=scaffold:KI270303.1;Alias=chrUn_KI270303v1,NT_187398.1 KI2
3 Ensembl scaffold 1 2165       ID=scaffold:KI270304.1;Alias=chrUn_KI270304v1,NT_187397.1 KI2
4 Ensembl scaffold 1 1472       ID=scaffold:KI270305.1;Alias=chrUn_KI270305v1,NT_187399.1 KI2
5 Ensembl scaffold 1 1201       ID=scaffold:KI270310.1;Alias=chrUn_KI270310v1,NT_187402.1 KI2

First 5 observations from data set N.LNC_RNA

Obs seqid source type start end score strand phase attribute
1 1 havana lnc_RNA 11869 14409   +   ID=transcript:ENST00000456328;Parent=gene:ENSG00000223972;Name=DDX11L1-202;biotype=lncRNA;tag=basic;transcript_id=ENST00000456328;transcript_support_level=1;version=2
2 1 havana lnc_RNA 29554 31097   +   ID=transcript:ENST00000473358;Parent=gene:ENSG00000243485;Name=MIR1302-2HG-202;biotype=lncRNA;tag=basic;transcript_id=ENST00000473358;transcript_support_level=5;version=1
3 1 havana lnc_RNA 30267 31109   +   ID=transcript:ENST00000469289;Parent=gene:ENSG00000243485;Name=MIR1302-2HG-201;biotype=lncRNA;tag=basic;transcript_id=ENST00000469289;transcript_support_level=5;version=1
4 1 havana lnc_RNA 34554 36081   -   ID=transcript:ENST00000417324;Parent=gene:ENSG00000237613;Name=FAM138A-201;biotype=lncRNA;tag=basic;transcript_id=ENST00000417324;transcript_support_level=1;version=1
5 1 havana lnc_RNA 35245 36073   -   ID=transcript:ENST00000461467;Parent=gene:ENSG00000237613;Name=FAM138A-202;biotype=lncRNA;transcript_id=ENST00000461467;transcript_support_level=3;version=1

First 5 observations from data set N.MIRNA

Obs seqid source type start end score strand phase attribute
1 1 mirbase miRNA 17369 17436   -   ID=transcript:ENST00000619216;Parent=gene:ENSG00000278267;Name=MIR6859-1-201;biotype=miRNA;tag=basic;transcript_id=ENST00000619216;transcript_support_level=NA;version=1
2 1 mirbase miRNA 30366 30503   +   ID=transcript:ENST00000607096;Parent=gene:ENSG00000284332;Name=MIR1302-2-201;biotype=miRNA;tag=basic;transcript_id=ENST00000607096;transcript_support_level=NA;version=1
3 1 mirbase miRNA 187891 187958   -   ID=transcript:ENST00000612080;Parent=gene:ENSG00000273874;Name=MIR6859-2-201;biotype=miRNA;tag=basic;transcript_id=ENST00000612080;transcript_support_level=NA;version=1
4 1 mirbase miRNA 632325 632413   -   ID=transcript:ENST00000621981;Parent=gene:ENSG00000278791;Name=AC114498.2-201;biotype=miRNA;tag=basic;transcript_id=ENST00000621981;transcript_support_level=NA;version=1
5 1 mirbase miRNA 1167104 1167198   +   ID=transcript:ENST00000384997;Parent=gene:ENSG00000207730;Name=MIR200B-201;biotype=miRNA;tag=basic;transcript_id=ENST00000384997;transcript_support_level=NA;version=3

First 5 observations from data set N.MRNA

Obs seqid source type start end score strand phase attribute
1 1 havana mRNA 65419 71585   +   ID=transcript:ENST00000641515;Parent=gene:ENSG00000186092;Name=OR4F5-202;biotype=protein_coding;tag=basic;transcript_id=ENST00000641515;version=2
2 1 ensembl mRNA 69055 70108   +   ID=transcript:ENST00000335137;Parent=gene:ENSG00000186092;Name=OR4F5-201;biotype=protein_coding;ccdsid=CCDS30547.1;tag=basic;transcript_id=ENST00000335137;transcript_support_level=NA (assigned to previous version 3);version=4
3 1 ensembl_h mRNA 450703 451697   -   ID=transcript:ENST00000426406;Parent=gene:ENSG00000284733;Name=OR4F29-201;biotype=protein_coding;ccdsid=CCDS72675.1;tag=basic;transcript_id=ENST00000426406;transcript_support_level=NA (assigned to previous version 2);version=3
4 1 ensembl_h mRNA 685679 686673   -   ID=transcript:ENST00000332831;Parent=gene:ENSG00000284662;Name=OR4F16-201;biotype=protein_coding;ccdsid=CCDS41221.1;tag=basic;transcript_id=ENST00000332831;transcript_support_level=NA (assigned to previous version 3);version=4
5 1 havana mRNA 923928 939291   +   ID=transcript:ENST00000420190;Parent=gene:ENSG00000187634;Name=SAMD11-203;biotype=protein_coding;transcript_id=ENST00000420190;transcript_support_level=3;version=6

First 5 observations from data set N.MT

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 16569       ID=chromosome:MT;Alias=chrM,J01415.2,NC_012920.1 MT
2 insdc ncRNA_gene 577 647   +   ID=gene:ENSG00000210049;Name=MT-TF;biotype=Mt_tRNA;description=mitochondrially encoded tRNA-Phe (UUU/C) [Source:HGNC Symbol%3BAcc:HGNC:7481];gene_id=ENSG00000210049;logic_name=mt_genbank_import_homo_sapiens;version=1 MT
3 ensembl tRNA 577 647   +   ID=transcript:ENST00000387314;Parent=gene:ENSG00000210049;Name=MT-TF-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387314;transcript_support_level=NA;version=1 MT
4 ensembl exon 577 647   +   Parent=transcript:ENST00000387314;Name=ENSE00001544501;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00001544501;rank=1;version=1 MT
5 insdc ncRNA_gene 648 1601   +   ID=gene:ENSG00000211459;Name=MT-RNR1;biotype=Mt_rRNA;description=mitochondrially encoded 12S rRNA [Source:HGNC Symbol%3BAcc:HGNC:7470];gene_id=ENSG00000211459;logic_name=mt_genbank_import_homo_sapiens;version=2 MT

First 5 observations from data set N.MTGENES

Obs seqid source type start end score strand phase ID Name Biotype Description Gene_id Logic_name length
1 MT insdc gene 3307 4262   +   ENSG00000198888 MT-ND1 protein_coding mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 ENSG00000198888 mt_genbank_im 956
2 MT insdc gene 4470 5511   +   ENSG00000198763 MT-ND2 protein_coding mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 ENSG00000198763 mt_genbank_im 1042
3 MT insdc gene 5904 7445   +   ENSG00000198804 MT-CO1 protein_coding mitochondrially encoded cytochrome c oxidase I ENSG00000198804 mt_genbank_import_homo_sapiens 1542
4 MT insdc gene 7586 8269   +   ENSG00000198712 MT-CO2 protein_coding mitochondrially encoded cytochrome c oxidase II ENSG00000198712 mt_genbank_import_homo_sapiens 684
5 MT insdc gene 8366 8572   +   ENSG00000228253 MT-ATP8 protein_coding mitochondrially encoded ATP synthase membrane subunit 8 ENSG00000228253 mt_genbank_import_homo_sap 207

First 5 observations from data set N.NCRNA

Obs seqid source type start end score strand phase attribute
1 1 ensembl ncRNA 1405460 1405752   -   ID=transcript:ENST00000582431;Parent=gene:ENSG00000264293;Name=RN7SL657P-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000582431;transcript_support_level=NA;version=2
2 1 ensembl ncRNA 3736943 3737103   +   ID=transcript:ENST00000611447;Parent=gene:ENSG00000276189;Name=AL136528.3-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000611447;transcript_support_level=NA;version=1
3 1 ensembl ncRNA 3782815 3783111   +   ID=transcript:ENST00000581512;Parent=gene:ENSG00000266075;Name=RN7SL574P-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000581512;transcript_support_level=NA;version=2
4 1 ensembl ncRNA 7982881 7982983   -   ID=transcript:ENST00000363474;Parent=gene:ENSG00000200344;Name=Y_RNA.140-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000363474;transcript_support_level=NA;version=1
5 1 ensembl ncRNA 8328067 8328179   +   ID=transcript:ENST00000516445;Parent=gene:ENSG00000252254;Name=Y_RNA.681-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000516445;transcript_support_level=NA;version=1

First 5 observations from data set N.NCRNA_GENE

Obs seqid source type start end score strand phase attribute
1 1 mirbase ncRNA_gene 17369 17436   -   ID=gene:ENSG00000278267;Name=MIR6859-1;biotype=miRNA;description=microRNA 6859-1 [Source:HGNC Symbol%3BAcc:HGNC:50039];gene_id=ENSG00000278267;logic_name=ncrna_homo_sapiens;version=1
2 1 havana ncRNA_gene 29554 31109   +   ID=gene:ENSG00000243485;Name=MIR1302-2HG;biotype=lncRNA;description=MIR1302-2 host gene [Source:HGNC Symbol%3BAcc:HGNC:52482];gene_id=ENSG00000243485;logic_name=havana_homo_sapiens;version=5
3 1 mirbase ncRNA_gene 30366 30503   +   ID=gene:ENSG00000284332;Name=MIR1302-2;biotype=miRNA;description=microRNA 1302-2 [Source:HGNC Symbol%3BAcc:HGNC:35294];gene_id=ENSG00000284332;logic_name=ncrna_homo_sapiens;version=1
4 1 havana ncRNA_gene 34554 36081   -   ID=gene:ENSG00000237613;Name=FAM138A;biotype=lncRNA;description=family with sequence similarity 138 member A [Source:HGNC Symbol%3BAcc:HGNC:32334];gene_id=ENSG00000237613;logic_name=havana_homo_sapiens;version=2
5 1 ensembl_h ncRNA_gene 89295 133723   -   ID=gene:ENSG00000238009;Name=AL627309.1;biotype=lncRNA;description=novel transcript;gene_id=ENSG00000238009;logic_name=ensembl_havana_lincrna_homo_sapiens;version=6

First 5 observations from data set N.NCRNA_GENES

Obs seqid source type start end score strand phase attribute
1 1 mirbase ncRNA_gene 17369 17436   -   ID=gene:ENSG00000278267;Name=MIR6859-1;biotype=miRNA;description=microRNA 6859-1 [Source:HGNC Symbol%3BAcc:HGNC:50039];gene_id=ENSG00000278267;logic_name=ncrna_homo_sapiens;version=1
2 1 havana ncRNA_gene 29554 31109   +   ID=gene:ENSG00000243485;Name=MIR1302-2HG;biotype=lncRNA;description=MIR1302-2 host gene [Source:HGNC Symbol%3BAcc:HGNC:52482];gene_id=ENSG00000243485;logic_name=havana_homo_sapiens;version=5
3 1 mirbase ncRNA_gene 30366 30503   +   ID=gene:ENSG00000284332;Name=MIR1302-2;biotype=miRNA;description=microRNA 1302-2 [Source:HGNC Symbol%3BAcc:HGNC:35294];gene_id=ENSG00000284332;logic_name=ncrna_homo_sapiens;version=1
4 1 havana ncRNA_gene 34554 36081   -   ID=gene:ENSG00000237613;Name=FAM138A;biotype=lncRNA;description=family with sequence similarity 138 member A [Source:HGNC Symbol%3BAcc:HGNC:32334];gene_id=ENSG00000237613;logic_name=havana_homo_sapiens;version=2
5 1 ensembl_h ncRNA_gene 89295 133723   -   ID=gene:ENSG00000238009;Name=AL627309.1;biotype=lncRNA;description=novel transcript;gene_id=ENSG00000238009;logic_name=ensembl_havana_lincrna_homo_sapiens;version=6

First 5 observations from data set N.NICOTINIC

Obs seqid source type start end score strand phase attribute
1 1 ensembl_h gene 154567778 154580013   +   ID=gene:ENSG00000160716;Name=CHRNB2;biotype=protein_coding;description=cholinergic receptor nicotinic beta 2 subunit [Source:HGNC Symbol%3BAcc:HGNC:1962];gene_id=ENSG00000160716;logic_name=ensembl_havana_gene_homo_sapiens;vers
2 11 ensembl_h gene 3665587 3671384   -   ID=gene:ENSG00000129749;Name=CHRNA10;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 10 subunit [Source:HGNC Symbol%3BAcc:HGNC:13800];gene_id=ENSG00000129749;logic_name=ensembl_havana_gene_homo_sapiens;
3 15 havana pseudogene 28346490 28346647   +   ID=gene:ENSG00000261561;Name=AC091304.5;biotype=unprocessed_pseudogene;description=cholinergic receptor%2C nicotinic%2C beta 4 (CHRNB4) pseudogene;gene_id=ENSG00000261561;logic_name=havana_homo_sapiens;version=1
4 15 havana pseudogene 28564986 28565152   -   ID=gene:ENSG00000260444;Name=AC138749.2;biotype=unprocessed_pseudogene;description=cholinergic receptor%2C nicotinic%2C beta 4 (CHRNB4) pseudogene;gene_id=ENSG00000260444;logic_name=havana_homo_sapiens;version=1
5 15 ensembl_h gene 31923438 32173018   +   ID=gene:ENSG00000175344;Name=CHRNA7;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 7 subunit [Source:HGNC Symbol%3BAcc:HGNC:1960];gene_id=ENSG00000175344;logic_name=ensembl_havana_gene_homo_sapiens;ver

First 5 observations from data set N.NIC_ALPHA

Obs seqid source type start end score strand phase attribute
1 11 ensembl_h gene 3665587 3671384   -   ID=gene:ENSG00000129749;Name=CHRNA10;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 10 subunit [Source:HGNC Symbol%3BAcc:HGNC:13800];gene_id=ENSG00000129749;logic_name=ensembl_havana_gene_homo_sapiens;
2 15 ensembl_h gene 31923438 32173018   +   ID=gene:ENSG00000175344;Name=CHRNA7;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 7 subunit [Source:HGNC Symbol%3BAcc:HGNC:1960];gene_id=ENSG00000175344;logic_name=ensembl_havana_gene_homo_sapiens;ver
3 15 ensembl_h gene 78565520 78595269   +   ID=gene:ENSG00000169684;Name=CHRNA5;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 5 subunit [Source:HGNC Symbol%3BAcc:HGNC:1959];gene_id=ENSG00000169684;logic_name=ensembl_havana_gene_homo_sapiens;ver
4 15 ensembl_h gene 78593052 78621295   -   ID=gene:ENSG00000080644;Name=CHRNA3;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 3 subunit [Source:HGNC Symbol%3BAcc:HGNC:1957];gene_id=ENSG00000080644;logic_name=ensembl_havana_gene_homo_sapiens;ver
5 2 ensembl_h gene 174747592 174787935   -   ID=gene:ENSG00000138435;Name=CHRNA1;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 1 subunit [Source:HGNC Symbol%3BAcc:HGNC:1955];gene_id=ENSG00000138435;logic_name=ensembl_havana_gene_homo_sapiens;ver

First 5 observations from data set N.NIC_ALPHA_BETA

Obs seqid source type start end score strand phase attribute
1 1 ensembl_h gene 154567778 154580013   +   ID=gene:ENSG00000160716;Name=CHRNB2;biotype=protein_coding;description=cholinergic receptor nicotinic beta 2 subunit [Source:HGNC Symbol%3BAcc:HGNC:1962];gene_id=ENSG00000160716;logic_name=ensembl_havana_gene_homo_sapiens;vers
2 11 ensembl_h gene 3665587 3671384   -   ID=gene:ENSG00000129749;Name=CHRNA10;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 10 subunit [Source:HGNC Symbol%3BAcc:HGNC:13800];gene_id=ENSG00000129749;logic_name=ensembl_havana_gene_homo_sapiens;
3 15 havana pseudogene 28346490 28346647   +   ID=gene:ENSG00000261561;Name=AC091304.5;biotype=unprocessed_pseudogene;description=cholinergic receptor%2C nicotinic%2C beta 4 (CHRNB4) pseudogene;gene_id=ENSG00000261561;logic_name=havana_homo_sapiens;version=1
4 15 havana pseudogene 28564986 28565152   -   ID=gene:ENSG00000260444;Name=AC138749.2;biotype=unprocessed_pseudogene;description=cholinergic receptor%2C nicotinic%2C beta 4 (CHRNB4) pseudogene;gene_id=ENSG00000260444;logic_name=havana_homo_sapiens;version=1
5 15 ensembl_h gene 31923438 32173018   +   ID=gene:ENSG00000175344;Name=CHRNA7;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 7 subunit [Source:HGNC Symbol%3BAcc:HGNC:1960];gene_id=ENSG00000175344;logic_name=ensembl_havana_gene_homo_sapiens;ver

First 5 observations from data set N.NIC_BETA

Obs seqid source type start end score strand phase attribute
1 1 ensembl_h gene 154567778 154580013   +   ID=gene:ENSG00000160716;Name=CHRNB2;biotype=protein_coding;description=cholinergic receptor nicotinic beta 2 subunit [Source:HGNC Symbol%3BAcc:HGNC:1962];gene_id=ENSG00000160716;logic_name=ensembl_havana_gene_homo_sapiens;vers
2 15 ensembl_h gene 78624111 78727754   -   ID=gene:ENSG00000117971;Name=CHRNB4;biotype=protein_coding;description=cholinergic receptor nicotinic beta 4 subunit [Source:HGNC Symbol%3BAcc:HGNC:1964];gene_id=ENSG00000117971;logic_name=ensembl_havana_gene_homo_sapiens;vers
3 17 ensembl_h gene 7445061 7457710   +   ID=gene:ENSG00000170175;Name=CHRNB1;biotype=protein_coding;description=cholinergic receptor nicotinic beta 1 subunit [Source:HGNC Symbol%3BAcc:HGNC:1961];gene_id=ENSG00000170175;logic_name=ensembl_havana_gene_homo_sapiens;vers
4 8 ensembl_h gene 42697366 42737407   +   ID=gene:ENSG00000147432;Name=CHRNB3;biotype=protein_coding;description=cholinergic receptor nicotinic beta 3 subunit [Source:HGNC Symbol%3BAcc:HGNC:1963];gene_id=ENSG00000147432;logic_name=ensembl_havana_gene_homo_sapiens;vers

First 5 observations from data set N.PROBLY

Obs AlmostCertainly HighlyLikely VeryGoodChance Probable Likely Probably WeBelieve BetterThanEven AboutEven WeDoubt Improbable Unlikely ProbablyNot LittleChance AlmostNoChance HighlyUnlikely ChancesAreSlight
1 95 80 85 75 66 75 66 55 50 40 20 30 15 20 5 25 25
2 95 75 75 51 75 51 51 51 50 20 49 25 49 5 5 10 5
3 95 85 85 70 75 70 80 60 50 30 10 25 25 20 1 5 15
4 95 85 85 70 75 70 80 60 50 30 10 25 25 20 1 5 15
5 98 95 80 70 70 75 65 60 50 10 50 5 20 5 1 2 10

First 5 observations from data set N.PSEUDOGENE

Obs seqid source type start end score strand phase attribute
1 1 havana pseudogene 11869 14409   +   ID=gene:ENSG00000223972;Name=DDX11L1;biotype=transcribed_unprocessed_pseudogene;description=DEAD/H-box helicase 11 like 1 [Source:HGNC Symbol%3BAcc:HGNC:37102];gene_id=ENSG00000223972;logic_name=havana_homo_sapiens;version=5
2 1 havana pseudogene 14404 29570   -   ID=gene:ENSG00000227232;Name=WASH7P;biotype=unprocessed_pseudogene;description=WASP family homolog 7%2C pseudogene [Source:HGNC Symbol%3BAcc:HGNC:38034];gene_id=ENSG00000227232;logic_name=havana_homo_sapiens;version=5
3 1 havana pseudogene 52473 53312   +   ID=gene:ENSG00000268020;Name=OR4G4P;biotype=unprocessed_pseudogene;description=olfactory receptor family 4 subfamily G member 4 pseudogene [Source:HGNC Symbol%3BAcc:HGNC:14822];gene_id=ENSG00000268020;logic_name=havana_homo_sa
4 1 havana pseudogene 57598 64116   +   ID=gene:ENSG00000240361;Name=OR4G11P;biotype=transcribed_unprocessed_pseudogene;description=olfactory receptor family 4 subfamily G member 11 pseudogene [Source:HGNC Symbol%3BAcc:HGNC:31276];gene_id=ENSG00000240361;logic_name=
5 1 havana pseudogene 131025 134836   +   ID=gene:ENSG00000233750;Name=CICP27;biotype=processed_pseudogene;description=capicua transcriptional repressor pseudogene 27 [Source:HGNC Symbol%3BAcc:HGNC:48835];gene_id=ENSG00000233750;logic_name=havana_homo_sapiens;version=

First 5 observations from data set N.PSEUDOGENES

Obs seqid source type start end score strand phase attribute
1 1 havana pseudogene 11869 14409   +   ID=gene:ENSG00000223972;Name=DDX11L1;biotype=transcribed_unprocessed_pseudogene;description=DEAD/H-box helicase 11 like 1 [Source:HGNC Symbol%3BAcc:HGNC:37102];gene_id=ENSG00000223972;logic_name=havana_homo_sapiens;version=5
2 1 havana pseudogene 14404 29570   -   ID=gene:ENSG00000227232;Name=WASH7P;biotype=unprocessed_pseudogene;description=WASP family homolog 7%2C pseudogene [Source:HGNC Symbol%3BAcc:HGNC:38034];gene_id=ENSG00000227232;logic_name=havana_homo_sapiens;version=5
3 1 havana pseudogene 52473 53312   +   ID=gene:ENSG00000268020;Name=OR4G4P;biotype=unprocessed_pseudogene;description=olfactory receptor family 4 subfamily G member 4 pseudogene [Source:HGNC Symbol%3BAcc:HGNC:14822];gene_id=ENSG00000268020;logic_name=havana_homo_sa
4 1 havana pseudogene 57598 64116   +   ID=gene:ENSG00000240361;Name=OR4G11P;biotype=transcribed_unprocessed_pseudogene;description=olfactory receptor family 4 subfamily G member 11 pseudogene [Source:HGNC Symbol%3BAcc:HGNC:31276];gene_id=ENSG00000240361;logic_name=
5 1 havana pseudogene 131025 134836   +   ID=gene:ENSG00000233750;Name=CICP27;biotype=processed_pseudogene;description=capicua transcriptional repressor pseudogene 27 [Source:HGNC Symbol%3BAcc:HGNC:48835];gene_id=ENSG00000233750;logic_name=havana_homo_sapiens;version=

First 5 observations from data set N.PSEUDOGENIC_TRANSCR

Obs seqid source type start end score strand phase attribute
1 1 havana pseudogenic_transcr 12010 13670   +   ID=transcript:ENST00000450305;Parent=gene:ENSG00000223972;Name=DDX11L1-201;biotype=transcribed_unprocessed_pseudogene;tag=basic;transcript_id=ENST00000450305;transcript_support_level=NA;version=2
2 1 havana pseudogenic_transcr 14404 29570   -   ID=transcript:ENST00000488147;Parent=gene:ENSG00000227232;Name=WASH7P-201;biotype=unprocessed_pseudogene;tag=basic;transcript_id=ENST00000488147;transcript_support_level=NA;version=1
3 1 havana pseudogenic_transcr 52473 53312   +   ID=transcript:ENST00000606857;Parent=gene:ENSG00000268020;Name=OR4G4P-201;biotype=unprocessed_pseudogene;tag=basic;transcript_id=ENST00000606857;transcript_support_level=NA;version=1
4 1 havana pseudogenic_transcr 62949 63887   +   ID=transcript:ENST00000492842;Parent=gene:ENSG00000240361;Name=OR4G11P-201;biotype=transcribed_unprocessed_pseudogene;tag=basic;transcript_id=ENST00000492842;transcript_support_level=NA (assigned to previous version 1);version
5 1 havana pseudogenic_transcr 131025 134836   +   ID=transcript:ENST00000442987;Parent=gene:ENSG00000233750;Name=CICP27-201;biotype=processed_pseudogene;tag=basic;transcript_id=ENST00000442987;transcript_support_level=NA;version=3

First 5 observations from data set N.RRNA

Obs seqid source type start end score strand phase attribute
1 1 ensembl rRNA 143439605 143439714   +   ID=transcript:ENST00000517021;Parent=gene:ENSG00000252830;Name=RNA5SP533-201;biotype=rRNA;tag=basic;transcript_id=ENST00000517021;transcript_support_level=NA;version=2
2 1 ensembl rRNA 144265217 144265326   +   ID=transcript:ENST00000621941;Parent=gene:ENSG00000276442;Name=RNA5SP529-201;biotype=rRNA;tag=basic;transcript_id=ENST00000621941;transcript_support_level=NA;version=1
3 1 ensembl rRNA 146539541 146539663   -   ID=transcript:ENST00000622298;Parent=gene:ENSG00000274408;Name=RNA5SP536-201;biotype=rRNA;tag=basic;transcript_id=ENST00000622298;transcript_support_level=NA;version=1
4 1 ensembl rRNA 182944365 182944490   -   ID=transcript:ENST00000362967;Parent=gene:ENSG00000199837;Name=RNA5SP71-201;biotype=rRNA;tag=basic;transcript_id=ENST00000362967;transcript_support_level=NA;version=1
5 1 ensembl rRNA 207708898 207708981   -   ID=transcript:ENST00000618635;Parent=gene:ENSG00000274059;Name=RNA5SP534-201;biotype=rRNA;tag=basic;transcript_id=ENST00000618635;transcript_support_level=NA;version=1

First 5 observations from data set N.SCAFFOLD

Obs seqid source type start end score strand phase attribute
1 GL0 Ensembl scaffold 1 209709       ID=scaffold:GL000008.2;Alias=chr4_GL000008v2_random,NT_113793.3
2 GL0 Ensembl scaffold 1 201709       ID=scaffold:GL000009.2;Alias=chr14_GL000009v2_random,NT_113796.3
3 GL0 Ensembl scaffold 1 191469       ID=scaffold:GL000194.1;Alias=chr14_GL000194v1_random,NT_113888.1
4 GL0 Ensembl scaffold 1 182896       ID=scaffold:GL000195.1;Alias=chrUn_GL000195v1,NT_113901.1
5 GL0 Ensembl scaffold 1 185591       ID=scaffold:GL000205.2;Alias=chr17_GL000205v2_random,NT_113930.2

First 5 observations from data set N.SCRNA

Obs seqid source type start end score strand phase attribute
1 1 ensembl scRNA 9082696 9082879   +   ID=transcript:ENST00000516595;Parent=gene:ENSG00000252404;Name=AL158048.1-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000516595;transcript_support_level=NA;version=1
2 1 ensembl scRNA 13696070 13696199   -   ID=transcript:ENST00000517276;Parent=gene:ENSG00000253085;Name=AL359771.2-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000517276;transcript_support_level=NA;version=1
3 1 ensembl scRNA 15542165 15542304   +   ID=transcript:ENST00000516057;Parent=gene:ENSG00000251866;Name=SCARNA21B-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000516057;transcript_support_level=NA;version=1
4 1 ensembl scRNA 26006006 26006130   +   ID=transcript:ENST00000516381;Parent=gene:ENSG00000252190;Name=AL592064.1-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000516381;transcript_support_level=NA;version=1
5 1 ensembl scRNA 26006216 26006299   +   ID=transcript:ENST00000516882;Parent=gene:ENSG00000252691;Name=AL592064.2-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000516882;transcript_support_level=NA;version=1

First 5 observations from data set N.SNORNA

Obs seqid source type start end score strand phase attribute
1 1 ensembl snoRNA 8511795 8511919   -   ID=transcript:ENST00000408156;Parent=gene:ENSG00000221083;Name=AL096855.1-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000408156;transcript_support_level=NA;version=1
2 1 ensembl snoRNA 12221148 12221271   -   ID=transcript:ENST00000517160;Parent=gene:ENSG00000252969;Name=SNORA70.22-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000517160;transcript_support_level=NA;version=1
3 1 ensembl snoRNA 12507246 12507397   +   ID=transcript:ENST00000459326;Parent=gene:ENSG00000239149;Name=SNORA59A-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000459326;transcript_support_level=NA;version=1
4 1 ensembl snoRNA 26642286 26642389   -   ID=transcript:ENST00000459201;Parent=gene:ENSG00000238316;Name=AL627082.2-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000459201;transcript_support_level=NA;version=1
5 1 ensembl snoRNA 28507366 28507571   +   ID=transcript:ENST00000364938;Parent=gene:ENSG00000274266;Name=SNORA73A-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000364938;transcript_support_level=NA;version=1

First 5 observations from data set N.SNRNA

Obs seqid source type start end score strand phase attribute
1 1 ensembl snRNA 157784 157887   -   ID=transcript:ENST00000410691;Parent=gene:ENSG00000222623;Name=RNU6-1100P-201;biotype=snRNA;tag=basic;transcript_id=ENST00000410691;transcript_support_level=NA;version=1
2 1 ensembl snRNA 516376 516479   -   ID=transcript:ENST00000614007;Parent=gene:ENSG00000278757;Name=U6.90-201;biotype=snRNA;tag=basic;transcript_id=ENST00000614007;transcript_support_level=NA;version=1
3 1 ensembl snRNA 758233 758336   -   ID=transcript:ENST00000411249;Parent=gene:ENSG00000223181;Name=RNU6-1199P-201;biotype=snRNA;tag=basic;transcript_id=ENST00000411249;transcript_support_level=NA;version=1
4 1 ensembl snRNA 6540854 6540964   +   ID=transcript:ENST00000517213;Parent=gene:ENSG00000253022;Name=RNU6-731P-201;biotype=snRNA;tag=basic;transcript_id=ENST00000517213;transcript_support_level=NA;version=1
5 1 ensembl snRNA 7219360 7219524   +   ID=transcript:ENST00000384328;Parent=gene:ENSG00000207056;Name=RNU1-8P-201;biotype=snRNA;tag=basic;transcript_id=ENST00000384328;transcript_support_level=NA;version=1

First 5 observations from data set N.THREE_PRIME_UTR

Obs seqid source type start end score strand phase attribute
1 1 havana three_prime_UTR 70009 71585   +   Parent=transcript:ENST00000641515
2 1 ensembl three_prime_UTR 70009 70108   +   Parent=transcript:ENST00000335137
3 1 ensembl_h three_prime_UTR 450703 450739   -   Parent=transcript:ENST00000426406
4 1 ensembl_h three_prime_UTR 685679 685715   -   Parent=transcript:ENST00000332831
5 1 havana three_prime_UTR 944154 944574   +   Parent=transcript:ENST00000342066

First 5 observations from data set N.TRNA

Obs seqid source type start end score strand phase attribute
1 MT ensembl tRNA 577 647   +   ID=transcript:ENST00000387314;Parent=gene:ENSG00000210049;Name=MT-TF-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387314;transcript_support_level=NA;version=1
2 MT ensembl tRNA 1602 1670   +   ID=transcript:ENST00000387342;Parent=gene:ENSG00000210077;Name=MT-TV-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387342;transcript_support_level=NA;version=1
3 MT ensembl tRNA 3230 3304   +   ID=transcript:ENST00000386347;Parent=gene:ENSG00000209082;Name=MT-TL1-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000386347;transcript_support_level=NA;version=1
4 MT ensembl tRNA 4263 4331   +   ID=transcript:ENST00000387365;Parent=gene:ENSG00000210100;Name=MT-TI-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387365;transcript_support_level=NA;version=1
5 MT ensembl tRNA 4329 4400   -   ID=transcript:ENST00000387372;Parent=gene:ENSG00000210107;Name=MT-TQ-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387372;transcript_support_level=NA;version=1

First 5 observations from data set N.UNCONFIRMED_TRANSCR

Obs seqid source type start end score strand phase attribute
1 1 havana unconfirmed_transcr 2566410 2569888   +   ID=transcript:ENST00000456687;Parent=gene:ENSG00000225931;Name=AL139246.2-201;biotype=TEC;tag=basic;transcript_id=ENST00000456687;transcript_support_level=5;version=3
2 1 havana unconfirmed_transcr 3205988 3208664   +   ID=transcript:ENST00000624175;Parent=gene:ENSG00000279839;Name=AL512383.1-201;biotype=TEC;tag=basic;transcript_id=ENST00000624175;transcript_support_level=NA;version=1
3 1 havana unconfirmed_transcr 9826289 9828271   -   ID=transcript:ENST00000639753;Parent=gene:ENSG00000280113;Name=AL357140.3-201;biotype=TEC;tag=basic;transcript_id=ENST00000639753;transcript_support_level=NA;version=1
4 1 ensembl unconfirmed_transcr 9827610 9828258   -   ID=transcript:ENST00000623863;Parent=gene:ENSG00000280113;Name=AL357140.3-202;biotype=TEC;transcript_id=ENST00000623863;transcript_support_level=NA;version=1
5 1 havana unconfirmed_transcr 18109389 18115861   +   ID=transcript:ENST00000624418;Parent=gene:ENSG00000280222;Name=AL365209.1-201;biotype=TEC;tag=basic;transcript_id=ENST00000624418;transcript_support_level=NA;version=1

First 5 observations from data set N.VAULTRNA_PRIMARY_TR

Obs seqid source type start end score strand phase attribute
1 5 havana vaultRNA_primary_tr 136080470 136080597   -   ID=transcript:ENST00000602301;Parent=gene:ENSG00000270123;Name=VTRNA2-1-201;biotype=vaultRNA;tag=basic;transcript_id=ENST00000602301;transcript_support_level=NA (assigned to previous version 1);version=2

First 5 observations from data set N.V_GENE_SEGMENT

Obs seqid source type start end score strand phase attribute
1 14 havana V_gene_segment 21621838 21622567   +   ID=transcript:ENST00000542354;Parent=gene:ENSG00000255569;Name=TRAV1-1-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000542354;transcript_support_level=NA;version=1
2 14 havana V_gene_segment 21642889 21643578   +   ID=transcript:ENST00000390423;Parent=gene:ENSG00000256553;Name=TRAV1-2-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000390423;transcript_support_level=NA;version=2
3 14 havana V_gene_segment 21712321 21712843   +   ID=transcript:ENST00000390424;Parent=gene:ENSG00000211776;Name=TRAV2-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000390424;transcript_support_level=NA;version=2
4 14 havana V_gene_segment 21723713 21724321   +   ID=transcript:ENST00000390425;Parent=gene:ENSG00000211777;Name=TRAV3-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000390425;transcript_support_level=NA;version=2
5 14 havana V_gene_segment 21736152 21736982   +   ID=transcript:ENST00000390426;Parent=gene:ENSG00000211778;Name=TRAV4-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000390426;transcript_support_level=NA;version=2

Data driven macro call using a macro variable to display 1st 5 observations of each member of a library

/* This macro will call the previously created macro: %print_5_obs */

%macro lib_print_5_obs_in_macrovar(libname);

   proc sql noprint;
   select cats('%print_5_obs(data=',"&libname..",memname,')' )
      into :printall separated by ' '
      from dictionary.tables
      where libname="%upcase(&libname)";
   quit;
   
   %put %superq(printall); /* %superq will prvent the execution of the macro variable */
   
   &printall
   
%mend lib_print_5_obs_in_macrovar;

<!DOCTYPE html PUBLIC “-//W3C//DTD HTML 4.01//EN” “http://www.w3.org/TR/html4/strict.dtd”>

370  ods listing close;ods html5 (id=saspy_internal) file=stdout options(bitmap_mode='inline') device=svg style=HTMLBlue; ods
370! graphics on / outputfmt=png;
NOTE: Writing HTML5(SASPY_INTERNAL) Body file: STDOUT
371  
372  /* This macro will call the previously created macro: %print_5_obs */
373  
374  %macro lib_print_5_obs_in_macrovar(libname);
375  
376     proc sql noprint;
377     select cats('%print_5_obs(data=',"&libname..",memname,')' )
378        into :printall separated by ' '
379        from dictionary.tables
380        where libname="%upcase(&libname)";
381     quit;
382  
383     %put %superq(printall); /* %superq will prvent the execution of the macro variable */
384  
385     &printall
386  
387  %mend lib_print_5_obs_in_macrovar;
NOTE: The macro LIB_PRINT_5_OBS_IN_MACROVAR completed compilation without errors.
      15 instructions 488 bytes.
388  
389  
390  ods html5 (id=saspy_internal) close;ods listing;

391  
%lib_print_5_obs_in_macrovar(n)
<!DOCTYPE html> SAS Output

First 5 observations from data set N.BIOLOGICAL_REGION

Obs seqid source type start end score strand phase attribute
1 1   biological_region 10469 11240 1.3e+03     external_name=oe %3D 0.79;logic_name=cpg
2 1   biological_region 10650 10657 0.999 +   logic_name=eponine
3 1   biological_region 10655 10657 0.999 -   logic_name=eponine
4 1   biological_region 10678 10687 0.999 +   logic_name=eponine
5 1   biological_region 10681 10688 0.999 -   logic_name=eponine

First 5 observations from data set N.CDS

Obs seqid source type start end score strand phase attribute
1 1 havana CDS 65565 65573   + 0 ID=CDS:ENSP00000493376;Parent=transcript:ENST00000641515;protein_id=ENSP00000493376
2 1 havana CDS 69037 70008   + 0 ID=CDS:ENSP00000493376;Parent=transcript:ENST00000641515;protein_id=ENSP00000493376
3 1 ensembl CDS 69091 70008   + 0 ID=CDS:ENSP00000334393;Parent=transcript:ENST00000335137;protein_id=ENSP00000334393
4 1 ensembl_h CDS 450740 451678   - 0 ID=CDS:ENSP00000409316;Parent=transcript:ENST00000426406;protein_id=ENSP00000409316
5 1 ensembl_h CDS 685716 686654   - 0 ID=CDS:ENSP00000329982;Parent=transcript:ENST00000332831;protein_id=ENSP00000329982

First 5 observations from data set N.CHR1

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11 Chr1
2   biological_region 10469 11240 1.3e+03     external_name=oe %3D 0.79;logic_name=cpg Chr1
3   biological_region 10650 10657 0.999 +   logic_name=eponine Chr1
4   biological_region 10655 10657 0.999 -   logic_name=eponine Chr1
5   biological_region 10678 10687 0.999 +   logic_name=eponine Chr1

First 5 observations from data set N.CHR10

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 133797422       ID=chromosome:10;Alias=CM000672.2,chr10,NC_000010.11 Chr10
2   biological_region 10494 12018 690     external_name=oe %3D 0.65;logic_name=cpg Chr10
3   biological_region 11624 11698 1 -   external_name=rank %3D 1;logic_name=firstef Chr10
4   biological_region 11774 12029 1 +   external_name=rank %3D 1;logic_name=firstef Chr10
5 havana ncRNA_gene 14061 16544   -   ID=gene:ENSG00000260370;Name=AC215217.1;biotype=lncRNA;description=novel transcript;gene_id=ENSG00000260370;logic_name=havana_homo_sapiens;version=1 Chr10

First 5 observations from data set N.CHR11

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 135086622       ID=chromosome:11;Alias=CM000673.2,chr11,NC_000011.10 Chr11
2 havana pseudogene 75780 76143   +   ID=gene:ENSG00000253826;Name=WBP1LP10;biotype=unprocessed_pseudogene;description=WBP1L pseudogene 10 [Source:HGNC Symbol%3BAcc:HGNC:51470];gene_id=ENSG00000253826;logic_name=havana_homo_sapiens;version=1 Chr11
3 havana pseudogenic_transcr 75780 76143   +   ID=transcript:ENST00000519787;Parent=gene:ENSG00000253826;Name=WBP1LP10-201;biotype=unprocessed_pseudogene;tag=basic;transcript_id=ENST00000519787;transcript_support_level=NA;version=1 Chr11
4 havana exon 75780 76143   +   Parent=transcript:ENST00000519787;Name=ENSE00002139035;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002139035;rank=1;version=1 Chr11
5 havana pseudogene 86649 87586   -   ID=gene:ENSG00000224777;Name=OR4F2P;biotype=unprocessed_pseudogene;description=olfactory receptor family 4 subfamily F member 2 pseudogene [Source:HGNC Symbol%3BAcc:HGNC:8299];gene_id=ENSG00000224777;logic_name=havana_homo_sap Chr11

First 5 observations from data set N.CHR12

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 133275309       ID=chromosome:12;Alias=CM000674.2,chr12,NC_000012.12 Chr12
2   biological_region 10588 11371 1.38e+03     external_name=oe %3D 0.79;logic_name=cpg Chr12
3   biological_region 10747 10752 0.999 +   logic_name=eponine Chr12
4   biological_region 10775 10783 0.999 +   logic_name=eponine Chr12
5   biological_region 10778 10783 0.999 -   logic_name=eponine Chr12

First 5 observations from data set N.CHR13

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 114364328       ID=chromosome:13;Alias=CM000675.2,chr13,NC_000013.11 Chr13
2 havana pseudogene 18174010 18178465   -   ID=gene:ENSG00000279924;Name=AL356585.4;biotype=unprocessed_pseudogene;description=novel ankyrin repeat domain-containing protein pseudogene;gene_id=ENSG00000279924;logic_name=havana_homo_sapiens;version=1 Chr13
3 havana pseudogenic_transcr 18174010 18178465   -   ID=transcript:ENST00000623078;Parent=gene:ENSG00000279924;Name=AL356585.4-201;biotype=unprocessed_pseudogene;tag=basic;transcript_id=ENST00000623078;transcript_support_level=NA;version=1 Chr13
4 havana exon 18174010 18174103   -   Parent=transcript:ENST00000623078;Name=ENSE00003759026;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003759026;rank=4;version=1 Chr13
5 havana exon 18174442 18174512   -   Parent=transcript:ENST00000623078;Name=ENSE00003758363;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003758363;rank=3;version=1 Chr13

First 5 observations from data set N.CHR14

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 107043718       ID=chromosome:14;Alias=CM000676.2,chr14,NC_000014.9 Chr14
2   biological_region 16024911 16025410 131     external_name=oe %3D 0.62;logic_name=cpg Chr14
3   biological_region 16029598 16030487 155     external_name=oe %3D 0.70;logic_name=cpg Chr14
4   biological_region 16041628 16042083 103     external_name=oe %3D 0.84;logic_name=cpg Chr14
5   biological_region 16052689 16053953 644     external_name=oe %3D 0.82;logic_name=cpg Chr14

First 5 observations from data set N.CHR15

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 101991189       ID=chromosome:15;Alias=CM000677.2,chr15,NC_000015.10 Chr15
2 havana pseudogene 19878555 19887814   +   ID=gene:ENSG00000215567;Name=AC138701.1;biotype=unprocessed_pseudogene;description=ankyrin repeat domain 30B (ANKRD30B) pseudogene;gene_id=ENSG00000215567;logic_name=havana_homo_sapiens;version=5 Chr15
3 havana pseudogenic_transcr 19878555 19887814   +   ID=transcript:ENST00000524329;Parent=gene:ENSG00000215567;Name=AC138701.1-201;biotype=unprocessed_pseudogene;tag=basic;transcript_id=ENST00000524329;transcript_support_level=NA;version=1 Chr15
4 havana exon 19878555 19878668   +   Parent=transcript:ENST00000524329;Name=ENSE00002133693;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002133693;rank=1;version=1 Chr15
5 havana exon 19878831 19879004   +   Parent=transcript:ENST00000524329;Name=ENSE00003544224;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003544224;rank=2;version=1 Chr15

First 5 observations from data set N.CHR16

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 90338345       ID=chromosome:16;Alias=CM000678.2,chr16,NC_000016.10 Chr16
2   biological_region 10400 10921 685     external_name=oe %3D 0.81;logic_name=cpg Chr16
3   biological_region 10645 10647 0.999 -   logic_name=eponine Chr16
4 havana pseudogene 11555 14090   +   ID=gene:ENSG00000233614;Name=DDX11L10;biotype=transcribed_unprocessed_pseudogene;description=DEAD/H-box helicase 11 like 10 [Source:HGNC Symbol%3BAcc:HGNC:14125];gene_id=ENSG00000233614;logic_name=havana_homo_sapiens;version=6 Chr16
5 havana lnc_RNA 11555 14090   +   ID=transcript:ENST00000513886;Parent=gene:ENSG00000233614;Name=DDX11L10-202;biotype=lncRNA;tag=basic;transcript_id=ENST00000513886;transcript_support_level=1;version=1 Chr16

First 5 observations from data set N.CHR17

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 83257441       ID=chromosome:17;Alias=CM000679.2,chr17,NC_000017.11 Chr17
2   biological_region 61680 61746 0.995 -   external_name=rank %3D 1;logic_name=firstef Chr17
3   biological_region 62925 63732 0.917 -   external_name=rank %3D 1;logic_name=firstef Chr17
4 havana ncRNA_gene 64099 76866   -   ID=gene:ENSG00000280279;Name=AC240565.2;biotype=lncRNA;description=novel transcript;gene_id=ENSG00000280279;logic_name=havana_homo_sapiens;version=1 Chr17
5 havana lnc_RNA 64099 76866   -   ID=transcript:ENST00000623180;Parent=gene:ENSG00000280279;Name=AC240565.2-201;biotype=lncRNA;tag=basic;transcript_id=ENST00000623180;transcript_support_level=5;version=1 Chr17

First 5 observations from data set N.CHR18

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 80373285       ID=chromosome:18;Alias=CM000680.2,chr18,NC_000018.10 Chr18
2   biological_region 10690 12372 1.18e+03     external_name=oe %3D 0.67;logic_name=cpg Chr18
3   biological_region 10979 10980 0.999 +   logic_name=eponine Chr18
4   biological_region 10988 10991 0.999 +   logic_name=eponine Chr18
5   biological_region 10997 11001 0.999 +   logic_name=eponine Chr18

First 5 observations from data set N.CHR19

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 58617616       ID=chromosome:19;Alias=CM000681.2,chr19,NC_000019.10 Chr19
2 havana pseudogene 60951 71626   -   ID=gene:ENSG00000282458;Name=WASH5P;biotype=transcribed_processed_pseudogene;description=WASP family homolog 5%2C pseudogene [Source:HGNC Symbol%3BAcc:HGNC:33884];gene_id=ENSG00000282458;logic_name=havana_homo_sapiens;version= Chr19
3 havana lnc_RNA 60951 70976   -   ID=transcript:ENST00000632506;Parent=gene:ENSG00000282458;Name=WASH5P-206;biotype=lncRNA;tag=basic;transcript_id=ENST00000632506;transcript_support_level=1;version=1 Chr19
4 havana exon 60951 61894   -   Parent=transcript:ENST00000632506;Name=ENSE00003783010;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003783010;rank=3;version=1 Chr19
5 havana exon 66346 66499   -   Parent=transcript:ENST00000632506;Name=ENSE00003783498;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003783498;rank=2;version=1 Chr19

First 5 observations from data set N.CHR2

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 242193529       ID=chromosome:2;Alias=CM000664.2,chr2,NC_000002.12 Chr2
2   biological_region 10379 11665 1.54e+03     external_name=oe %3D 0.77;logic_name=cpg Chr2
3   biological_region 10846 10850 0.999 +   logic_name=eponine Chr2
4   biological_region 10870 10870 0.999 -   logic_name=eponine Chr2
5   biological_region 10893 10900 0.999 +   logic_name=eponine Chr2

First 5 observations from data set N.CHR20

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 64444167       ID=chromosome:20;Alias=CM000682.2,chr20,NC_000020.11 Chr20
2 ensembl_h gene 87250 97094   +   ID=gene:ENSG00000178591;Name=DEFB125;biotype=protein_coding;description=defensin beta 125 [Source:HGNC Symbol%3BAcc:HGNC:18105];gene_id=ENSG00000178591;logic_name=ensembl_havana_gene_homo_sapiens;version=7 Chr20
3 havana lnc_RNA 87250 97094   +   ID=transcript:ENST00000608838;Parent=gene:ENSG00000178591;Name=DEFB125-202;biotype=lncRNA;transcript_id=ENST00000608838;transcript_support_level=2;version=1 Chr20
4 havana exon 87250 87359   +   Parent=transcript:ENST00000608838;Name=ENSE00003702629;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003702629;rank=1;version=1 Chr20
5 havana exon 96005 97094   +   Parent=transcript:ENST00000608838;Name=ENSE00003705060;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003705060;rank=2;version=1 Chr20

First 5 observations from data set N.CHR21

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 46709983       ID=chromosome:21;Alias=CM000683.2,chr21,NC_000021.9 Chr21
2 havana gene 5011799 5017145   +   ID=gene:ENSG00000279493;Name=FP565260.4;biotype=protein_coding;description=novel protein%2C similar to DNA (cytosine-5-)-methyltransferase 3-like DNMT3L;gene_id=ENSG00000279493;logic_name=havana_homo_sapiens;version=1 Chr21
3 havana mRNA 5011799 5017145   +   ID=transcript:ENST00000624081;Parent=gene:ENSG00000279493;Name=FP565260.4-201;biotype=protein_coding;tag=basic;transcript_id=ENST00000624081;transcript_support_level=5;version=1 Chr21
4 havana exon 5011799 5011874   +   Parent=transcript:ENST00000624081;Name=ENSE00003760288;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=ENSE00003760288;rank=1;version=1 Chr21
5 havana CDS 5011799 5011874   + 0 ID=CDS:ENSP00000485664;Parent=transcript:ENST00000624081;protein_id=ENSP00000485664 Chr21

First 5 observations from data set N.CHR22

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 50818468       ID=chromosome:22;Alias=CM000684.2,chr22,NC_000022.11 Chr22
2   biological_region 10525487 10527570 2.94e+03     external_name=oe %3D 0.82;logic_name=cpg Chr22
3   biological_region 10525565 10525568 0.999 -   logic_name=eponine Chr22
4   biological_region 10525587 10525588 0.999 -   logic_name=eponine Chr22
5   biological_region 10525602 10525607 0.999 -   logic_name=eponine Chr22

First 5 observations from data set N.CHR3

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 198295559       ID=chromosome:3;Alias=CM000665.2,chr3,NC_000003.12 Chr3
2   biological_region 10917 11891 2.75e+03     external_name=oe %3D 0.82;logic_name=cpg Chr3
3   biological_region 11024 11029 0.999 +   logic_name=eponine Chr3
4   biological_region 11049 11059 0.999 +   logic_name=eponine Chr3
5   biological_region 11054 11059 0.999 -   logic_name=eponine Chr3

First 5 observations from data set N.CHR4

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 190214555       ID=chromosome:4;Alias=CM000666.2,chr4,NC_000004.12 Chr4
2   biological_region 10297 11723 3.11e+03     external_name=oe %3D 0.88;logic_name=cpg Chr4
3   biological_region 10505 10514 0.999 +   logic_name=eponine Chr4
4   biological_region 10534 10544 0.999 +   logic_name=eponine Chr4
5   biological_region 10578 10581 0.999 +   logic_name=eponine Chr4

First 5 observations from data set N.CHR5

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 181538259       ID=chromosome:5;Alias=CM000667.2,chr5,NC_000005.10 Chr5
2   biological_region 12284 13259 2.08e+03     external_name=oe %3D 0.80;logic_name=cpg Chr5
3   biological_region 12486 12491 0.999 +   logic_name=eponine Chr5
4   biological_region 12511 12520 0.999 +   logic_name=eponine Chr5
5   biological_region 12515 12521 0.999 -   logic_name=eponine Chr5

First 5 observations from data set N.CHR6

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 170805979       ID=chromosome:6;Alias=CM000668.2,chr6,NC_000006.12 Chr6
2 havana pseudogene 95124 95454   +   ID=gene:ENSG00000271530;Name=WBP1LP12;biotype=processed_pseudogene;description=WBP1L pseudogene 12 [Source:HGNC Symbol%3BAcc:HGNC:51472];gene_id=ENSG00000271530;logic_name=havana_homo_sapiens;version=1 Chr6
3 havana pseudogenic_transcr 95124 95454   +   ID=transcript:ENST00000604449;Parent=gene:ENSG00000271530;Name=WBP1LP12-201;biotype=processed_pseudogene;tag=basic;transcript_id=ENST00000604449;transcript_support_level=NA;version=1 Chr6
4 havana exon 95124 95454   +   Parent=transcript:ENST00000604449;Name=ENSE00003496393;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003496393;rank=1;version=1 Chr6
5 havana pseudogene 105919 106856   -   ID=gene:ENSG00000220212;Name=OR4F1P;biotype=unprocessed_pseudogene;description=olfactory receptor family 4 subfamily F member 1 pseudogene [Source:HGNC Symbol%3BAcc:HGNC:8298];gene_id=ENSG00000220212;logic_name=havana_homo_sap Chr6

First 5 observations from data set N.CHR7

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 159345973       ID=chromosome:7;Alias=CM000669.2,chr7,NC_000007.14 Chr7
2 havana ncRNA_gene 12704 27234   +   ID=gene:ENSG00000283061;Name=AC215522.3;biotype=lncRNA;description=novel transcript;gene_id=ENSG00000283061;logic_name=havana_homo_sapiens;version=1 Chr7
3 havana lnc_RNA 12704 27199   +   ID=transcript:ENST00000635602;Parent=gene:ENSG00000283061;Name=AC215522.3-201;biotype=lncRNA;tag=basic;transcript_id=ENST00000635602;transcript_support_level=5;version=1 Chr7
4 havana exon 12704 12822   +   Parent=transcript:ENST00000635602;Name=ENSE00003788848;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003788848;rank=1;version=1 Chr7
5 havana exon 26965 27199   +   Parent=transcript:ENST00000635602;Name=ENSE00003789861;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003789861;rank=2;version=1 Chr7

First 5 observations from data set N.CHR8

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 145138636       ID=chromosome:8;Alias=CM000670.2,chr8,NC_000008.11 Chr8
2 havana pseudogene 64091 64320   -   ID=gene:ENSG00000253620;Name=AC144568.1;biotype=processed_pseudogene;description=family with sequence similarity 41%2C member C (FAM41C) pseudogene;gene_id=ENSG00000253620;logic_name=havana_homo_sapiens;version=2 Chr8
3 havana pseudogenic_transcr 64091 64320   -   ID=transcript:ENST00000520139;Parent=gene:ENSG00000253620;Name=AC144568.1-201;biotype=processed_pseudogene;tag=basic;transcript_id=ENST00000520139;transcript_support_level=NA;version=2 Chr8
4 havana exon 64091 64175   -   Parent=transcript:ENST00000520139;Name=ENSE00002126516;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002126516;rank=2;version=2 Chr8
5 havana exon 64269 64320   -   Parent=transcript:ENST00000520139;Name=ENSE00002132061;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002132061;rank=1;version=2 Chr8

First 5 observations from data set N.CHR9

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 138394717       ID=chromosome:9;Alias=CM000671.2,chr9,NC_000009.12 Chr9
2   biological_region 10817 11353 724     external_name=oe %3D 0.82;logic_name=cpg Chr9
3   biological_region 11019 11021 0.999 +   logic_name=eponine Chr9
4   biological_region 11047 11049 0.999 +   logic_name=eponine Chr9
5   biological_region 11068 11070 0.999 -   logic_name=eponine Chr9

First 5 observations from data set N.CHROMOSOME

Obs seqid source type start end score strand phase attribute
1 1 Ensembl chromosome 1 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11
2 10 Ensembl chromosome 1 133797422       ID=chromosome:10;Alias=CM000672.2,chr10,NC_000010.11
3 11 Ensembl chromosome 1 135086622       ID=chromosome:11;Alias=CM000673.2,chr11,NC_000011.10
4 12 Ensembl chromosome 1 133275309       ID=chromosome:12;Alias=CM000674.2,chr12,NC_000012.12
5 13 Ensembl chromosome 1 114364328       ID=chromosome:13;Alias=CM000675.2,chr13,NC_000013.11

First 5 observations from data set N.CHROMOSOMES

Obs seqid source type start end score strand phase attribute
1 1 Ensembl chromosome 1 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11
2 10 Ensembl chromosome 1 133797422       ID=chromosome:10;Alias=CM000672.2,chr10,NC_000010.11
3 11 Ensembl chromosome 1 135086622       ID=chromosome:11;Alias=CM000673.2,chr11,NC_000011.10
4 12 Ensembl chromosome 1 133275309       ID=chromosome:12;Alias=CM000674.2,chr12,NC_000012.12
5 13 Ensembl chromosome 1 114364328       ID=chromosome:13;Alias=CM000675.2,chr13,NC_000013.11

First 5 observations from data set N.CHRX

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 156040895       ID=chromosome:X;Alias=CM000685.2,chrX,NC_000023.11 ChrX
2   biological_region 13291 14128 1 -   external_name=rank %3D 1;logic_name=firstef ChrX
3   biological_region 13315 14128 1 -   external_name=rank %3D 2;logic_name=firstef ChrX
4   biological_region 14036 14793 575     external_name=oe %3D 1.04;logic_name=cpg ChrX
5   biological_region 14495 14632 1 +   external_name=rank %3D 1;logic_name=firstef ChrX

First 5 observations from data set N.CHRY

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 2781480 56887902       ID=chromosome:Y;Alias=CM000686.2,chrY,NC_000024.10 ChrY
2 ensembl ncRNA_gene 2784749 2784853   +   ID=gene:ENSG00000251841;Name=RNU6-1334P;biotype=snRNA;description=RNA%2C U6 small nuclear 1334%2C pseudogene [Source:HGNC Symbol%3BAcc:HGNC:48297];gene_id=ENSG00000251841;logic_name=ncrna_homo_sapiens;version=1 ChrY
3 ensembl snRNA 2784749 2784853   +   ID=transcript:ENST00000516032;Parent=gene:ENSG00000251841;Name=RNU6-1334P-201;biotype=snRNA;tag=basic;transcript_id=ENST00000516032;transcript_support_level=NA;version=1 ChrY
4 ensembl exon 2784749 2784853   +   Parent=transcript:ENST00000516032;Name=ENSE00002088309;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002088309;rank=1;version=1 ChrY
5 ensembl_h gene 2786855 2787682   -   ID=gene:ENSG00000184895;Name=SRY;biotype=protein_coding;description=sex determining region Y [Source:HGNC Symbol%3BAcc:HGNC:11311];gene_id=ENSG00000184895;logic_name=ensembl_havana_gene_homo_sapiens;version=8 ChrY

First 5 observations from data set N.C_GENE_SEGMENT

Obs seqid source type start end score strand phase attribute
1 14 havana C_gene_segment 22462932 22465787   +   ID=transcript:ENST00000390477;Parent=gene:ENSG00000211829;Name=TRDC-201;biotype=TR_C_gene;tag=basic;transcript_id=ENST00000390477;transcript_support_level=NA;version=2
2 14 havana C_gene_segment 22547506 22552156   +   ID=transcript:ENST00000611116;Parent=gene:ENSG00000277734;Name=TRAC-201;biotype=TR_C_gene;tag=basic;transcript_id=ENST00000611116;transcript_support_level=NA (assigned to previous version 1);version=2
3 14 havana C_gene_segment 105583731 105588395   -   ID=transcript:ENST00000497872;Parent=gene:ENSG00000211890;Name=IGHA2-202;biotype=IG_C_gene;tag=basic;transcript_id=ENST00000497872;transcript_support_level=1 (assigned to previous version 3);version=4
4 14 havana C_gene_segment 105586889 105588395   -   ID=transcript:ENST00000390539;Parent=gene:ENSG00000211890;Name=IGHA2-201;biotype=IG_C_gene;transcript_id=ENST00000390539;transcript_support_level=NA;version=2
5 14 havana C_gene_segment 105597691 105601728   -   ID=transcript:ENST00000641420;Parent=gene:ENSG00000211891;Name=IGHE-202;biotype=IG_C_gene;tag=basic;transcript_id=ENST00000641420;version=1

First 5 observations from data set N.D_GENE_SEGMENT

Obs seqid source type start end score strand phase attribute
1 14 havana D_gene_segment 22438547 22438554   +   ID=transcript:ENST00000415118;Parent=gene:ENSG00000223997;Name=TRDD1-201;biotype=TR_D_gene;tag=basic;transcript_id=ENST00000415118;transcript_support_level=NA;version=1
2 14 havana D_gene_segment 22439007 22439015   +   ID=transcript:ENST00000434970;Parent=gene:ENSG00000237235;Name=TRDD2-201;biotype=TR_D_gene;tag=basic;transcript_id=ENST00000434970;transcript_support_level=NA;version=2
3 14 havana D_gene_segment 22449113 22449125   +   ID=transcript:ENST00000448914;Parent=gene:ENSG00000228985;Name=TRDD3-201;biotype=TR_D_gene;tag=basic;transcript_id=ENST00000448914;transcript_support_level=NA;version=1
4 14 havana D_gene_segment 105865551 105865561   -   ID=transcript:ENST00000439842;Parent=gene:ENSG00000236597;Name=IGHD7-27-201;biotype=IG_D_gene;tag=basic;transcript_id=ENST00000439842;transcript_support_level=NA;version=1
5 14 havana D_gene_segment 105881034 105881053   -   ID=transcript:ENST00000390567;Parent=gene:ENSG00000211907;Name=IGHD1-26-201;biotype=IG_D_gene;tag=basic;transcript_id=ENST00000390567;transcript_support_level=NA;version=1

First 5 observations from data set N.EXON

Obs seqid source type start end score strand phase attribute
1 1 havana exon 11869 12227   +   Parent=transcript:ENST00000456328;Name=ENSE00002234944;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002234944;rank=1;version=1
2 1 havana exon 12613 12721   +   Parent=transcript:ENST00000456328;Name=ENSE00003582793;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00003582793;rank=2;version=1
3 1 havana exon 13221 14409   +   Parent=transcript:ENST00000456328;Name=ENSE00002312635;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00002312635;rank=3;version=1
4 1 havana exon 12010 12057   +   Parent=transcript:ENST00000450305;Name=ENSE00001948541;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00001948541;rank=1;version=1
5 1 havana exon 12179 12227   +   Parent=transcript:ENST00000450305;Name=ENSE00001671638;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00001671638;rank=2;version=2

First 5 observations from data set N.FIVE_PRIME_UTR

Obs seqid source type start end score strand phase attribute
1 1 havana five_prime_UTR 65419 65433   +   Parent=transcript:ENST00000641515
2 1 havana five_prime_UTR 65520 65564   +   Parent=transcript:ENST00000641515
3 1 ensembl five_prime_UTR 69055 69090   +   Parent=transcript:ENST00000335137
4 1 ensembl_h five_prime_UTR 451679 451697   -   Parent=transcript:ENST00000426406
5 1 ensembl_h five_prime_UTR 686655 686673   -   Parent=transcript:ENST00000332831

First 5 observations from data set N.GENE

Obs seqid source type start end score strand phase attribute
1 1 ensembl_h gene 65419 71585   +   ID=gene:ENSG00000186092;Name=OR4F5;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 5 [Source:HGNC Symbol%3BAcc:HGNC:14825];gene_id=ENSG00000186092;logic_name=ensembl_havana_gene_homo_sapiens;v
2 1 ensembl_h gene 450703 451697   -   ID=gene:ENSG00000284733;Name=OR4F29;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 29 [Source:HGNC Symbol%3BAcc:HGNC:31275];gene_id=ENSG00000284733;logic_name=ensembl_havana_gene_homo_sapiens
3 1 ensembl_h gene 685679 686673   -   ID=gene:ENSG00000284662;Name=OR4F16;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 16 [Source:HGNC Symbol%3BAcc:HGNC:15079];gene_id=ENSG00000284662;logic_name=ensembl_havana_gene_homo_sapiens
4 1 ensembl_h gene 923928 944581   +   ID=gene:ENSG00000187634;Name=SAMD11;biotype=protein_coding;description=sterile alpha motif domain containing 11 [Source:HGNC Symbol%3BAcc:HGNC:28706];gene_id=ENSG00000187634;logic_name=ensembl_havana_gene_homo_sapiens;version=
5 1 ensembl_h gene 944203 959309   -   ID=gene:ENSG00000188976;Name=NOC2L;biotype=protein_coding;description=NOC2 like nucleolar associated transcriptional repressor [Source:HGNC Symbol%3BAcc:HGNC:24517];gene_id=ENSG00000188976;logic_name=ensembl_havana_gene_homo_s

First 5 observations from data set N.GENES

Obs seqid source type start end score strand phase ID Name Biotype Description Gene_id Logic_name length log_length
1 1 ensembl_h gene 65419 71585   +   ENSG00000186092 OR4F5 protein_coding olfactory receptor family 4 subfamily F member 5 ENSG00000186092 ensembl_havana_gene_homo_sapiens 6167 8.72697
2 1 ensembl_h gene 450703 451697   -   ENSG00000284733 OR4F29 protein_coding olfactory receptor family 4 subfamily F member 29 ENSG00000284733 ensembl_havana_gene_homo_sapiens 995 6.90274
3 1 ensembl_h gene 685679 686673   -   ENSG00000284662 OR4F16 protein_coding olfactory receptor family 4 subfamily F member 16 ENSG00000284662 ensembl_havana_gene_homo_sapiens 995 6.90274
4 1 ensembl_h gene 923928 944581   +   ENSG00000187634 SAMD11 protein_coding sterile alpha motif domain containing 11 ENSG00000187634 ensembl_havana_gene_homo_sapiens 20654 9.93566
5 1 ensembl_h gene 944203 959309   -   ENSG00000188976 NOC2L protein_coding NOC2 like nucleolar associated transcriptional repressor ENSG00000188976 ensembl_havana_gene_homo_s 15107 9.62291

First 5 observations from data set N.GENES_SCAN_SUBSTR

Obs seqid source type start end score strand phase ID Name Biotype Description Gene_id Logic_name
1 1 ensembl_h gene 65419 71585   +   ENSG00000186092 OR4F5 protein_coding olfactory receptor family 4 subfamily F member 5 ENSG00000186092 ensembl_havana_gene_homo_sapiens
2 1 ensembl_h gene 450703 451697   -   ENSG00000284733 OR4F29 protein_coding olfactory receptor family 4 subfamily F member 29 ENSG00000284733 ensembl_havana_gene_homo_sapiens
3 1 ensembl_h gene 685679 686673   -   ENSG00000284662 OR4F16 protein_coding olfactory receptor family 4 subfamily F member 16 ENSG00000284662 ensembl_havana_gene_homo_sapiens
4 1 ensembl_h gene 923928 944581   +   ENSG00000187634 SAMD11 protein_coding sterile alpha motif domain containing 11 ENSG00000187634 ensembl_havana_gene_homo_sapiens
5 1 ensembl_h gene 944203 959309   -   ENSG00000188976 NOC2L protein_coding NOC2 like nucleolar associated transcriptional repressor ENSG00000188976 ensembl_havana_gene_homo_s

First 5 observations from data set N.GENE_REGEX_1

Obs seqid source type start end score strand phase attribute PATTERN LENGTH gene_name STRING
1 1 ensembl_h gene . 71585   +   ID=gene:ENSG00000186092;Name=OR4F5;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 5 [Source:HGNC Symbol%3BAcc:HGNC:14825];gene_id=ENSG00000186092;logic_name=ensembl_havana_gene_homo_sapiens;v . .   .
2 1 ensembl_h gene . 451697   -   ID=gene:ENSG00000284733;Name=OR4F29;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 29 [Source:HGNC Symbol%3BAcc:HGNC:31275];gene_id=ENSG00000284733;logic_name=ensembl_havana_gene_homo_sapiens . .   .
3 1 ensembl_h gene . 686673   -   ID=gene:ENSG00000284662;Name=OR4F16;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 16 [Source:HGNC Symbol%3BAcc:HGNC:15079];gene_id=ENSG00000284662;logic_name=ensembl_havana_gene_homo_sapiens . .   .
4 1 ensembl_h gene . 944581   +   ID=gene:ENSG00000187634;Name=SAMD11;biotype=protein_coding;description=sterile alpha motif domain containing 11 [Source:HGNC Symbol%3BAcc:HGNC:28706];gene_id=ENSG00000187634;logic_name=ensembl_havana_gene_homo_sapiens;version= . .   .
5 1 ensembl_h gene . 959309   -   ID=gene:ENSG00000188976;Name=NOC2L;biotype=protein_coding;description=NOC2 like nucleolar associated transcriptional repressor [Source:HGNC Symbol%3BAcc:HGNC:24517];gene_id=ENSG00000188976;logic_name=ensembl_havana_gene_homo_s . .   .

First 5 observations from data set N.GENE_REGX

Obs seqid source type start end score strand phase attribute id gene_name d_name description
1 1 ensembl_h gene 65419 71585   +   ID=gene:ENSG00000186092;Name=OR4F5;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 5 [Source:HGNC Symbol%3BAcc:HGNC:14825];gene_id=ENSG00000186092;logic_name=ensembl_havana_gene_homo_sapiens;v ENSG00000186092 OR4F5   olfactory receptor family 4 subfamily F member 5
2 1 ensembl_h gene 450703 451697   -   ID=gene:ENSG00000284733;Name=OR4F29;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 29 [Source:HGNC Symbol%3BAcc:HGNC:31275];gene_id=ENSG00000284733;logic_name=ensembl_havana_gene_homo_sapiens ENSG00000284733 OR4F29   olfactory receptor family 4 subfamily F member 29
3 1 ensembl_h gene 685679 686673   -   ID=gene:ENSG00000284662;Name=OR4F16;biotype=protein_coding;description=olfactory receptor family 4 subfamily F member 16 [Source:HGNC Symbol%3BAcc:HGNC:15079];gene_id=ENSG00000284662;logic_name=ensembl_havana_gene_homo_sapiens ENSG00000284662 OR4F16   olfactory receptor family 4 subfamily F member 16
4 1 ensembl_h gene 923928 944581   +   ID=gene:ENSG00000187634;Name=SAMD11;biotype=protein_coding;description=sterile alpha motif domain containing 11 [Source:HGNC Symbol%3BAcc:HGNC:28706];gene_id=ENSG00000187634;logic_name=ensembl_havana_gene_homo_sapiens;version= ENSG00000187634 SAMD11   sterile alpha motif domain containing 11
5 1 ensembl_h gene 944203 959309   -   ID=gene:ENSG00000188976;Name=NOC2L;biotype=protein_coding;description=NOC2 like nucleolar associated transcriptional repressor [Source:HGNC Symbol%3BAcc:HGNC:24517];gene_id=ENSG00000188976;logic_name=ensembl_havana_gene_homo_s ENSG00000188976 NOC2L   NOC2 like nucleolar associated transcriptional repressor

First 5 observations from data set N.GL10

Obs source type start end score strand phase attribute SeqName
1 Ensembl scaffold 1 209709       ID=scaffold:GL000008.2;Alias=chr4_GL000008v2_random,NT_113793.3 GL10
2   biological_region 83284 83394 1 -   external_name=rank %3D 1;logic_name=firstef GL10
3   biological_region 83318 83804 342     external_name=oe %3D 0.85;logic_name=cpg GL10
4   biological_region 83763 84145 1 +   external_name=rank %3D 1;logic_name=firstef GL10
5 Ensembl scaffold 1 201709       ID=scaffold:GL000009.2;Alias=chr14_GL000009v2_random,NT_113796.3 GL10

First 5 observations from data set N.GTF

Obs seqid source type start end score strand phase attribute SeqName
1 1 Ensembl chromosome 1 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11 Chr1
2 1   biological_region 10469 11240 1.3e+03     external_name=oe %3D 0.79;logic_name=cpg Chr1
3 1   biological_region 10650 10657 0.999 +   logic_name=eponine Chr1
4 1   biological_region 10655 10657 0.999 -   logic_name=eponine Chr1
5 1   biological_region 10678 10687 0.999 +   logic_name=eponine Chr1

First 5 observations from data set N.GTF1

Obs VAR1 seqid source type start end score strand phase attribute
1 1 1 Ensembl chromosome 1 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11
2 2 1   biological_region 10469 11240 1.3e+03     external_name=oe %3D 0.79;logic_name=cpg
3 3 1   biological_region 10650 10657 0.999 +   logic_name=eponine
4 4 1   biological_region 10655 10657 0.999 -   logic_name=eponine
5 5 1   biological_region 10678 10687 0.999 +   logic_name=eponine

First 5 observations from data set N.GTF_ATTRIBUTE

Obs attribute
1 ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11
2 external_name=oe %3D 0.79;logic_name=cpg
3 logic_name=eponine
4 logic_name=eponine
5 logic_name=eponine

First 5 observations from data set N.GTF_SEQLENGTH

Obs seqid source type start end seq_length score strand phase attribute
1 1 Ensembl chromosome 1 248956422 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11
2 1   biological_region 10469 11240 772 1.3e+03     external_name=oe %3D 0.79;logic_name=cpg
3 1   biological_region 10650 10657 8 0.999 +   logic_name=eponine
4 1   biological_region 10655 10657 3 0.999 -   logic_name=eponine
5 1   biological_region 10678 10687 10 0.999 +   logic_name=eponine

First 5 observations from data set N.GTF_SEQNAME

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 248956422       ID=chromosome:1;Alias=CM000663.2,chr1,NC_000001.11 Chr1
2   biological_region 10469 11240 1.3e+03     external_name=oe %3D 0.79;logic_name=cpg Chr1
3   biological_region 10650 10657 0.999 +   logic_name=eponine Chr1
4   biological_region 10655 10657 0.999 -   logic_name=eponine Chr1
5   biological_region 10678 10687 0.999 +   logic_name=eponine Chr1

First 5 observations from data set N.J_GENE_SEGMENT

Obs seqid source type start end score strand phase attribute
1 14 havana J_gene_segment 22450089 22450139   +   ID=transcript:ENST00000390473;Parent=gene:ENSG00000211825;Name=TRDJ1-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390473;transcript_support_level=NA;version=1
2 14 havana J_gene_segment 22455249 22455296   +   ID=transcript:ENST00000390474;Parent=gene:ENSG00000211826;Name=TRDJ4-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390474;transcript_support_level=NA;version=1
3 14 havana J_gene_segment 22456689 22456742   +   ID=transcript:ENST00000390475;Parent=gene:ENSG00000211827;Name=TRDJ2-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390475;transcript_support_level=NA;version=1
4 14 havana J_gene_segment 22459098 22459156   +   ID=transcript:ENST00000390476;Parent=gene:ENSG00000211828;Name=TRDJ3-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390476;transcript_support_level=NA;version=1
5 14 havana J_gene_segment 22475316 22475375   +   ID=transcript:ENST00000390479;Parent=gene:ENSG00000211831;Name=TRAJ61-201;biotype=TR_J_gene;tag=basic;transcript_id=ENST00000390479;transcript_support_level=NA;version=2

First 5 observations from data set N.KI2

Obs source type start end score strand phase attribute SeqName
1 Ensembl scaffold 1 2274       ID=scaffold:KI270302.1;Alias=chrUn_KI270302v1,NT_187396.1 KI2
2 Ensembl scaffold 1 1942       ID=scaffold:KI270303.1;Alias=chrUn_KI270303v1,NT_187398.1 KI2
3 Ensembl scaffold 1 2165       ID=scaffold:KI270304.1;Alias=chrUn_KI270304v1,NT_187397.1 KI2
4 Ensembl scaffold 1 1472       ID=scaffold:KI270305.1;Alias=chrUn_KI270305v1,NT_187399.1 KI2
5 Ensembl scaffold 1 1201       ID=scaffold:KI270310.1;Alias=chrUn_KI270310v1,NT_187402.1 KI2

First 5 observations from data set N.LNC_RNA

Obs seqid source type start end score strand phase attribute
1 1 havana lnc_RNA 11869 14409   +   ID=transcript:ENST00000456328;Parent=gene:ENSG00000223972;Name=DDX11L1-202;biotype=lncRNA;tag=basic;transcript_id=ENST00000456328;transcript_support_level=1;version=2
2 1 havana lnc_RNA 29554 31097   +   ID=transcript:ENST00000473358;Parent=gene:ENSG00000243485;Name=MIR1302-2HG-202;biotype=lncRNA;tag=basic;transcript_id=ENST00000473358;transcript_support_level=5;version=1
3 1 havana lnc_RNA 30267 31109   +   ID=transcript:ENST00000469289;Parent=gene:ENSG00000243485;Name=MIR1302-2HG-201;biotype=lncRNA;tag=basic;transcript_id=ENST00000469289;transcript_support_level=5;version=1
4 1 havana lnc_RNA 34554 36081   -   ID=transcript:ENST00000417324;Parent=gene:ENSG00000237613;Name=FAM138A-201;biotype=lncRNA;tag=basic;transcript_id=ENST00000417324;transcript_support_level=1;version=1
5 1 havana lnc_RNA 35245 36073   -   ID=transcript:ENST00000461467;Parent=gene:ENSG00000237613;Name=FAM138A-202;biotype=lncRNA;transcript_id=ENST00000461467;transcript_support_level=3;version=1

First 5 observations from data set N.MIRNA

Obs seqid source type start end score strand phase attribute
1 1 mirbase miRNA 17369 17436   -   ID=transcript:ENST00000619216;Parent=gene:ENSG00000278267;Name=MIR6859-1-201;biotype=miRNA;tag=basic;transcript_id=ENST00000619216;transcript_support_level=NA;version=1
2 1 mirbase miRNA 30366 30503   +   ID=transcript:ENST00000607096;Parent=gene:ENSG00000284332;Name=MIR1302-2-201;biotype=miRNA;tag=basic;transcript_id=ENST00000607096;transcript_support_level=NA;version=1
3 1 mirbase miRNA 187891 187958   -   ID=transcript:ENST00000612080;Parent=gene:ENSG00000273874;Name=MIR6859-2-201;biotype=miRNA;tag=basic;transcript_id=ENST00000612080;transcript_support_level=NA;version=1
4 1 mirbase miRNA 632325 632413   -   ID=transcript:ENST00000621981;Parent=gene:ENSG00000278791;Name=AC114498.2-201;biotype=miRNA;tag=basic;transcript_id=ENST00000621981;transcript_support_level=NA;version=1
5 1 mirbase miRNA 1167104 1167198   +   ID=transcript:ENST00000384997;Parent=gene:ENSG00000207730;Name=MIR200B-201;biotype=miRNA;tag=basic;transcript_id=ENST00000384997;transcript_support_level=NA;version=3

First 5 observations from data set N.MRNA

Obs seqid source type start end score strand phase attribute
1 1 havana mRNA 65419 71585   +   ID=transcript:ENST00000641515;Parent=gene:ENSG00000186092;Name=OR4F5-202;biotype=protein_coding;tag=basic;transcript_id=ENST00000641515;version=2
2 1 ensembl mRNA 69055 70108   +   ID=transcript:ENST00000335137;Parent=gene:ENSG00000186092;Name=OR4F5-201;biotype=protein_coding;ccdsid=CCDS30547.1;tag=basic;transcript_id=ENST00000335137;transcript_support_level=NA (assigned to previous version 3);version=4
3 1 ensembl_h mRNA 450703 451697   -   ID=transcript:ENST00000426406;Parent=gene:ENSG00000284733;Name=OR4F29-201;biotype=protein_coding;ccdsid=CCDS72675.1;tag=basic;transcript_id=ENST00000426406;transcript_support_level=NA (assigned to previous version 2);version=3
4 1 ensembl_h mRNA 685679 686673   -   ID=transcript:ENST00000332831;Parent=gene:ENSG00000284662;Name=OR4F16-201;biotype=protein_coding;ccdsid=CCDS41221.1;tag=basic;transcript_id=ENST00000332831;transcript_support_level=NA (assigned to previous version 3);version=4
5 1 havana mRNA 923928 939291   +   ID=transcript:ENST00000420190;Parent=gene:ENSG00000187634;Name=SAMD11-203;biotype=protein_coding;transcript_id=ENST00000420190;transcript_support_level=3;version=6

First 5 observations from data set N.MT

Obs source type start end score strand phase attribute SeqName
1 Ensembl chromosome 1 16569       ID=chromosome:MT;Alias=chrM,J01415.2,NC_012920.1 MT
2 insdc ncRNA_gene 577 647   +   ID=gene:ENSG00000210049;Name=MT-TF;biotype=Mt_tRNA;description=mitochondrially encoded tRNA-Phe (UUU/C) [Source:HGNC Symbol%3BAcc:HGNC:7481];gene_id=ENSG00000210049;logic_name=mt_genbank_import_homo_sapiens;version=1 MT
3 ensembl tRNA 577 647   +   ID=transcript:ENST00000387314;Parent=gene:ENSG00000210049;Name=MT-TF-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387314;transcript_support_level=NA;version=1 MT
4 ensembl exon 577 647   +   Parent=transcript:ENST00000387314;Name=ENSE00001544501;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=ENSE00001544501;rank=1;version=1 MT
5 insdc ncRNA_gene 648 1601   +   ID=gene:ENSG00000211459;Name=MT-RNR1;biotype=Mt_rRNA;description=mitochondrially encoded 12S rRNA [Source:HGNC Symbol%3BAcc:HGNC:7470];gene_id=ENSG00000211459;logic_name=mt_genbank_import_homo_sapiens;version=2 MT

First 5 observations from data set N.MTGENES

Obs seqid source type start end score strand phase ID Name Biotype Description Gene_id Logic_name length
1 MT insdc gene 3307 4262   +   ENSG00000198888 MT-ND1 protein_coding mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 ENSG00000198888 mt_genbank_im 956
2 MT insdc gene 4470 5511   +   ENSG00000198763 MT-ND2 protein_coding mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 ENSG00000198763 mt_genbank_im 1042
3 MT insdc gene 5904 7445   +   ENSG00000198804 MT-CO1 protein_coding mitochondrially encoded cytochrome c oxidase I ENSG00000198804 mt_genbank_import_homo_sapiens 1542
4 MT insdc gene 7586 8269   +   ENSG00000198712 MT-CO2 protein_coding mitochondrially encoded cytochrome c oxidase II ENSG00000198712 mt_genbank_import_homo_sapiens 684
5 MT insdc gene 8366 8572   +   ENSG00000228253 MT-ATP8 protein_coding mitochondrially encoded ATP synthase membrane subunit 8 ENSG00000228253 mt_genbank_import_homo_sap 207

First 5 observations from data set N.NCRNA

Obs seqid source type start end score strand phase attribute
1 1 ensembl ncRNA 1405460 1405752   -   ID=transcript:ENST00000582431;Parent=gene:ENSG00000264293;Name=RN7SL657P-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000582431;transcript_support_level=NA;version=2
2 1 ensembl ncRNA 3736943 3737103   +   ID=transcript:ENST00000611447;Parent=gene:ENSG00000276189;Name=AL136528.3-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000611447;transcript_support_level=NA;version=1
3 1 ensembl ncRNA 3782815 3783111   +   ID=transcript:ENST00000581512;Parent=gene:ENSG00000266075;Name=RN7SL574P-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000581512;transcript_support_level=NA;version=2
4 1 ensembl ncRNA 7982881 7982983   -   ID=transcript:ENST00000363474;Parent=gene:ENSG00000200344;Name=Y_RNA.140-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000363474;transcript_support_level=NA;version=1
5 1 ensembl ncRNA 8328067 8328179   +   ID=transcript:ENST00000516445;Parent=gene:ENSG00000252254;Name=Y_RNA.681-201;biotype=misc_RNA;tag=basic;transcript_id=ENST00000516445;transcript_support_level=NA;version=1

First 5 observations from data set N.NCRNA_GENE

Obs seqid source type start end score strand phase attribute
1 1 mirbase ncRNA_gene 17369 17436   -   ID=gene:ENSG00000278267;Name=MIR6859-1;biotype=miRNA;description=microRNA 6859-1 [Source:HGNC Symbol%3BAcc:HGNC:50039];gene_id=ENSG00000278267;logic_name=ncrna_homo_sapiens;version=1
2 1 havana ncRNA_gene 29554 31109   +   ID=gene:ENSG00000243485;Name=MIR1302-2HG;biotype=lncRNA;description=MIR1302-2 host gene [Source:HGNC Symbol%3BAcc:HGNC:52482];gene_id=ENSG00000243485;logic_name=havana_homo_sapiens;version=5
3 1 mirbase ncRNA_gene 30366 30503   +   ID=gene:ENSG00000284332;Name=MIR1302-2;biotype=miRNA;description=microRNA 1302-2 [Source:HGNC Symbol%3BAcc:HGNC:35294];gene_id=ENSG00000284332;logic_name=ncrna_homo_sapiens;version=1
4 1 havana ncRNA_gene 34554 36081   -   ID=gene:ENSG00000237613;Name=FAM138A;biotype=lncRNA;description=family with sequence similarity 138 member A [Source:HGNC Symbol%3BAcc:HGNC:32334];gene_id=ENSG00000237613;logic_name=havana_homo_sapiens;version=2
5 1 ensembl_h ncRNA_gene 89295 133723   -   ID=gene:ENSG00000238009;Name=AL627309.1;biotype=lncRNA;description=novel transcript;gene_id=ENSG00000238009;logic_name=ensembl_havana_lincrna_homo_sapiens;version=6

First 5 observations from data set N.NCRNA_GENES

Obs seqid source type start end score strand phase attribute
1 1 mirbase ncRNA_gene 17369 17436   -   ID=gene:ENSG00000278267;Name=MIR6859-1;biotype=miRNA;description=microRNA 6859-1 [Source:HGNC Symbol%3BAcc:HGNC:50039];gene_id=ENSG00000278267;logic_name=ncrna_homo_sapiens;version=1
2 1 havana ncRNA_gene 29554 31109   +   ID=gene:ENSG00000243485;Name=MIR1302-2HG;biotype=lncRNA;description=MIR1302-2 host gene [Source:HGNC Symbol%3BAcc:HGNC:52482];gene_id=ENSG00000243485;logic_name=havana_homo_sapiens;version=5
3 1 mirbase ncRNA_gene 30366 30503   +   ID=gene:ENSG00000284332;Name=MIR1302-2;biotype=miRNA;description=microRNA 1302-2 [Source:HGNC Symbol%3BAcc:HGNC:35294];gene_id=ENSG00000284332;logic_name=ncrna_homo_sapiens;version=1
4 1 havana ncRNA_gene 34554 36081   -   ID=gene:ENSG00000237613;Name=FAM138A;biotype=lncRNA;description=family with sequence similarity 138 member A [Source:HGNC Symbol%3BAcc:HGNC:32334];gene_id=ENSG00000237613;logic_name=havana_homo_sapiens;version=2
5 1 ensembl_h ncRNA_gene 89295 133723   -   ID=gene:ENSG00000238009;Name=AL627309.1;biotype=lncRNA;description=novel transcript;gene_id=ENSG00000238009;logic_name=ensembl_havana_lincrna_homo_sapiens;version=6

First 5 observations from data set N.NICOTINIC

Obs seqid source type start end score strand phase attribute
1 1 ensembl_h gene 154567778 154580013   +   ID=gene:ENSG00000160716;Name=CHRNB2;biotype=protein_coding;description=cholinergic receptor nicotinic beta 2 subunit [Source:HGNC Symbol%3BAcc:HGNC:1962];gene_id=ENSG00000160716;logic_name=ensembl_havana_gene_homo_sapiens;vers
2 11 ensembl_h gene 3665587 3671384   -   ID=gene:ENSG00000129749;Name=CHRNA10;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 10 subunit [Source:HGNC Symbol%3BAcc:HGNC:13800];gene_id=ENSG00000129749;logic_name=ensembl_havana_gene_homo_sapiens;
3 15 havana pseudogene 28346490 28346647   +   ID=gene:ENSG00000261561;Name=AC091304.5;biotype=unprocessed_pseudogene;description=cholinergic receptor%2C nicotinic%2C beta 4 (CHRNB4) pseudogene;gene_id=ENSG00000261561;logic_name=havana_homo_sapiens;version=1
4 15 havana pseudogene 28564986 28565152   -   ID=gene:ENSG00000260444;Name=AC138749.2;biotype=unprocessed_pseudogene;description=cholinergic receptor%2C nicotinic%2C beta 4 (CHRNB4) pseudogene;gene_id=ENSG00000260444;logic_name=havana_homo_sapiens;version=1
5 15 ensembl_h gene 31923438 32173018   +   ID=gene:ENSG00000175344;Name=CHRNA7;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 7 subunit [Source:HGNC Symbol%3BAcc:HGNC:1960];gene_id=ENSG00000175344;logic_name=ensembl_havana_gene_homo_sapiens;ver

First 5 observations from data set N.NIC_ALPHA

Obs seqid source type start end score strand phase attribute
1 11 ensembl_h gene 3665587 3671384   -   ID=gene:ENSG00000129749;Name=CHRNA10;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 10 subunit [Source:HGNC Symbol%3BAcc:HGNC:13800];gene_id=ENSG00000129749;logic_name=ensembl_havana_gene_homo_sapiens;
2 15 ensembl_h gene 31923438 32173018   +   ID=gene:ENSG00000175344;Name=CHRNA7;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 7 subunit [Source:HGNC Symbol%3BAcc:HGNC:1960];gene_id=ENSG00000175344;logic_name=ensembl_havana_gene_homo_sapiens;ver
3 15 ensembl_h gene 78565520 78595269   +   ID=gene:ENSG00000169684;Name=CHRNA5;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 5 subunit [Source:HGNC Symbol%3BAcc:HGNC:1959];gene_id=ENSG00000169684;logic_name=ensembl_havana_gene_homo_sapiens;ver
4 15 ensembl_h gene 78593052 78621295   -   ID=gene:ENSG00000080644;Name=CHRNA3;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 3 subunit [Source:HGNC Symbol%3BAcc:HGNC:1957];gene_id=ENSG00000080644;logic_name=ensembl_havana_gene_homo_sapiens;ver
5 2 ensembl_h gene 174747592 174787935   -   ID=gene:ENSG00000138435;Name=CHRNA1;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 1 subunit [Source:HGNC Symbol%3BAcc:HGNC:1955];gene_id=ENSG00000138435;logic_name=ensembl_havana_gene_homo_sapiens;ver

First 5 observations from data set N.NIC_ALPHA_BETA

Obs seqid source type start end score strand phase attribute
1 1 ensembl_h gene 154567778 154580013   +   ID=gene:ENSG00000160716;Name=CHRNB2;biotype=protein_coding;description=cholinergic receptor nicotinic beta 2 subunit [Source:HGNC Symbol%3BAcc:HGNC:1962];gene_id=ENSG00000160716;logic_name=ensembl_havana_gene_homo_sapiens;vers
2 11 ensembl_h gene 3665587 3671384   -   ID=gene:ENSG00000129749;Name=CHRNA10;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 10 subunit [Source:HGNC Symbol%3BAcc:HGNC:13800];gene_id=ENSG00000129749;logic_name=ensembl_havana_gene_homo_sapiens;
3 15 havana pseudogene 28346490 28346647   +   ID=gene:ENSG00000261561;Name=AC091304.5;biotype=unprocessed_pseudogene;description=cholinergic receptor%2C nicotinic%2C beta 4 (CHRNB4) pseudogene;gene_id=ENSG00000261561;logic_name=havana_homo_sapiens;version=1
4 15 havana pseudogene 28564986 28565152   -   ID=gene:ENSG00000260444;Name=AC138749.2;biotype=unprocessed_pseudogene;description=cholinergic receptor%2C nicotinic%2C beta 4 (CHRNB4) pseudogene;gene_id=ENSG00000260444;logic_name=havana_homo_sapiens;version=1
5 15 ensembl_h gene 31923438 32173018   +   ID=gene:ENSG00000175344;Name=CHRNA7;biotype=protein_coding;description=cholinergic receptor nicotinic alpha 7 subunit [Source:HGNC Symbol%3BAcc:HGNC:1960];gene_id=ENSG00000175344;logic_name=ensembl_havana_gene_homo_sapiens;ver

First 5 observations from data set N.NIC_BETA

Obs seqid source type start end score strand phase attribute
1 1 ensembl_h gene 154567778 154580013   +   ID=gene:ENSG00000160716;Name=CHRNB2;biotype=protein_coding;description=cholinergic receptor nicotinic beta 2 subunit [Source:HGNC Symbol%3BAcc:HGNC:1962];gene_id=ENSG00000160716;logic_name=ensembl_havana_gene_homo_sapiens;vers
2 15 ensembl_h gene 78624111 78727754   -   ID=gene:ENSG00000117971;Name=CHRNB4;biotype=protein_coding;description=cholinergic receptor nicotinic beta 4 subunit [Source:HGNC Symbol%3BAcc:HGNC:1964];gene_id=ENSG00000117971;logic_name=ensembl_havana_gene_homo_sapiens;vers
3 17 ensembl_h gene 7445061 7457710   +   ID=gene:ENSG00000170175;Name=CHRNB1;biotype=protein_coding;description=cholinergic receptor nicotinic beta 1 subunit [Source:HGNC Symbol%3BAcc:HGNC:1961];gene_id=ENSG00000170175;logic_name=ensembl_havana_gene_homo_sapiens;vers
4 8 ensembl_h gene 42697366 42737407   +   ID=gene:ENSG00000147432;Name=CHRNB3;biotype=protein_coding;description=cholinergic receptor nicotinic beta 3 subunit [Source:HGNC Symbol%3BAcc:HGNC:1963];gene_id=ENSG00000147432;logic_name=ensembl_havana_gene_homo_sapiens;vers

First 5 observations from data set N.PROBLY

Obs AlmostCertainly HighlyLikely VeryGoodChance Probable Likely Probably WeBelieve BetterThanEven AboutEven WeDoubt Improbable Unlikely ProbablyNot LittleChance AlmostNoChance HighlyUnlikely ChancesAreSlight
1 95 80 85 75 66 75 66 55 50 40 20 30 15 20 5 25 25
2 95 75 75 51 75 51 51 51 50 20 49 25 49 5 5 10 5
3 95 85 85 70 75 70 80 60 50 30 10 25 25 20 1 5 15
4 95 85 85 70 75 70 80 60 50 30 10 25 25 20 1 5 15
5 98 95 80 70 70 75 65 60 50 10 50 5 20 5 1 2 10

First 5 observations from data set N.PSEUDOGENE

Obs seqid source type start end score strand phase attribute
1 1 havana pseudogene 11869 14409   +   ID=gene:ENSG00000223972;Name=DDX11L1;biotype=transcribed_unprocessed_pseudogene;description=DEAD/H-box helicase 11 like 1 [Source:HGNC Symbol%3BAcc:HGNC:37102];gene_id=ENSG00000223972;logic_name=havana_homo_sapiens;version=5
2 1 havana pseudogene 14404 29570   -   ID=gene:ENSG00000227232;Name=WASH7P;biotype=unprocessed_pseudogene;description=WASP family homolog 7%2C pseudogene [Source:HGNC Symbol%3BAcc:HGNC:38034];gene_id=ENSG00000227232;logic_name=havana_homo_sapiens;version=5
3 1 havana pseudogene 52473 53312   +   ID=gene:ENSG00000268020;Name=OR4G4P;biotype=unprocessed_pseudogene;description=olfactory receptor family 4 subfamily G member 4 pseudogene [Source:HGNC Symbol%3BAcc:HGNC:14822];gene_id=ENSG00000268020;logic_name=havana_homo_sa
4 1 havana pseudogene 57598 64116   +   ID=gene:ENSG00000240361;Name=OR4G11P;biotype=transcribed_unprocessed_pseudogene;description=olfactory receptor family 4 subfamily G member 11 pseudogene [Source:HGNC Symbol%3BAcc:HGNC:31276];gene_id=ENSG00000240361;logic_name=
5 1 havana pseudogene 131025 134836   +   ID=gene:ENSG00000233750;Name=CICP27;biotype=processed_pseudogene;description=capicua transcriptional repressor pseudogene 27 [Source:HGNC Symbol%3BAcc:HGNC:48835];gene_id=ENSG00000233750;logic_name=havana_homo_sapiens;version=

First 5 observations from data set N.PSEUDOGENES

Obs seqid source type start end score strand phase attribute
1 1 havana pseudogene 11869 14409   +   ID=gene:ENSG00000223972;Name=DDX11L1;biotype=transcribed_unprocessed_pseudogene;description=DEAD/H-box helicase 11 like 1 [Source:HGNC Symbol%3BAcc:HGNC:37102];gene_id=ENSG00000223972;logic_name=havana_homo_sapiens;version=5
2 1 havana pseudogene 14404 29570   -   ID=gene:ENSG00000227232;Name=WASH7P;biotype=unprocessed_pseudogene;description=WASP family homolog 7%2C pseudogene [Source:HGNC Symbol%3BAcc:HGNC:38034];gene_id=ENSG00000227232;logic_name=havana_homo_sapiens;version=5
3 1 havana pseudogene 52473 53312   +   ID=gene:ENSG00000268020;Name=OR4G4P;biotype=unprocessed_pseudogene;description=olfactory receptor family 4 subfamily G member 4 pseudogene [Source:HGNC Symbol%3BAcc:HGNC:14822];gene_id=ENSG00000268020;logic_name=havana_homo_sa
4 1 havana pseudogene 57598 64116   +   ID=gene:ENSG00000240361;Name=OR4G11P;biotype=transcribed_unprocessed_pseudogene;description=olfactory receptor family 4 subfamily G member 11 pseudogene [Source:HGNC Symbol%3BAcc:HGNC:31276];gene_id=ENSG00000240361;logic_name=
5 1 havana pseudogene 131025 134836   +   ID=gene:ENSG00000233750;Name=CICP27;biotype=processed_pseudogene;description=capicua transcriptional repressor pseudogene 27 [Source:HGNC Symbol%3BAcc:HGNC:48835];gene_id=ENSG00000233750;logic_name=havana_homo_sapiens;version=

First 5 observations from data set N.PSEUDOGENIC_TRANSCR

Obs seqid source type start end score strand phase attribute
1 1 havana pseudogenic_transcr 12010 13670   +   ID=transcript:ENST00000450305;Parent=gene:ENSG00000223972;Name=DDX11L1-201;biotype=transcribed_unprocessed_pseudogene;tag=basic;transcript_id=ENST00000450305;transcript_support_level=NA;version=2
2 1 havana pseudogenic_transcr 14404 29570   -   ID=transcript:ENST00000488147;Parent=gene:ENSG00000227232;Name=WASH7P-201;biotype=unprocessed_pseudogene;tag=basic;transcript_id=ENST00000488147;transcript_support_level=NA;version=1
3 1 havana pseudogenic_transcr 52473 53312   +   ID=transcript:ENST00000606857;Parent=gene:ENSG00000268020;Name=OR4G4P-201;biotype=unprocessed_pseudogene;tag=basic;transcript_id=ENST00000606857;transcript_support_level=NA;version=1
4 1 havana pseudogenic_transcr 62949 63887   +   ID=transcript:ENST00000492842;Parent=gene:ENSG00000240361;Name=OR4G11P-201;biotype=transcribed_unprocessed_pseudogene;tag=basic;transcript_id=ENST00000492842;transcript_support_level=NA (assigned to previous version 1);version
5 1 havana pseudogenic_transcr 131025 134836   +   ID=transcript:ENST00000442987;Parent=gene:ENSG00000233750;Name=CICP27-201;biotype=processed_pseudogene;tag=basic;transcript_id=ENST00000442987;transcript_support_level=NA;version=3

First 5 observations from data set N.RRNA

Obs seqid source type start end score strand phase attribute
1 1 ensembl rRNA 143439605 143439714   +   ID=transcript:ENST00000517021;Parent=gene:ENSG00000252830;Name=RNA5SP533-201;biotype=rRNA;tag=basic;transcript_id=ENST00000517021;transcript_support_level=NA;version=2
2 1 ensembl rRNA 144265217 144265326   +   ID=transcript:ENST00000621941;Parent=gene:ENSG00000276442;Name=RNA5SP529-201;biotype=rRNA;tag=basic;transcript_id=ENST00000621941;transcript_support_level=NA;version=1
3 1 ensembl rRNA 146539541 146539663   -   ID=transcript:ENST00000622298;Parent=gene:ENSG00000274408;Name=RNA5SP536-201;biotype=rRNA;tag=basic;transcript_id=ENST00000622298;transcript_support_level=NA;version=1
4 1 ensembl rRNA 182944365 182944490   -   ID=transcript:ENST00000362967;Parent=gene:ENSG00000199837;Name=RNA5SP71-201;biotype=rRNA;tag=basic;transcript_id=ENST00000362967;transcript_support_level=NA;version=1
5 1 ensembl rRNA 207708898 207708981   -   ID=transcript:ENST00000618635;Parent=gene:ENSG00000274059;Name=RNA5SP534-201;biotype=rRNA;tag=basic;transcript_id=ENST00000618635;transcript_support_level=NA;version=1

First 5 observations from data set N.SCAFFOLD

Obs seqid source type start end score strand phase attribute
1 GL0 Ensembl scaffold 1 209709       ID=scaffold:GL000008.2;Alias=chr4_GL000008v2_random,NT_113793.3
2 GL0 Ensembl scaffold 1 201709       ID=scaffold:GL000009.2;Alias=chr14_GL000009v2_random,NT_113796.3
3 GL0 Ensembl scaffold 1 191469       ID=scaffold:GL000194.1;Alias=chr14_GL000194v1_random,NT_113888.1
4 GL0 Ensembl scaffold 1 182896       ID=scaffold:GL000195.1;Alias=chrUn_GL000195v1,NT_113901.1
5 GL0 Ensembl scaffold 1 185591       ID=scaffold:GL000205.2;Alias=chr17_GL000205v2_random,NT_113930.2

First 5 observations from data set N.SCRNA

Obs seqid source type start end score strand phase attribute
1 1 ensembl scRNA 9082696 9082879   +   ID=transcript:ENST00000516595;Parent=gene:ENSG00000252404;Name=AL158048.1-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000516595;transcript_support_level=NA;version=1
2 1 ensembl scRNA 13696070 13696199   -   ID=transcript:ENST00000517276;Parent=gene:ENSG00000253085;Name=AL359771.2-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000517276;transcript_support_level=NA;version=1
3 1 ensembl scRNA 15542165 15542304   +   ID=transcript:ENST00000516057;Parent=gene:ENSG00000251866;Name=SCARNA21B-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000516057;transcript_support_level=NA;version=1
4 1 ensembl scRNA 26006006 26006130   +   ID=transcript:ENST00000516381;Parent=gene:ENSG00000252190;Name=AL592064.1-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000516381;transcript_support_level=NA;version=1
5 1 ensembl scRNA 26006216 26006299   +   ID=transcript:ENST00000516882;Parent=gene:ENSG00000252691;Name=AL592064.2-201;biotype=scaRNA;tag=basic;transcript_id=ENST00000516882;transcript_support_level=NA;version=1

First 5 observations from data set N.SNORNA

Obs seqid source type start end score strand phase attribute
1 1 ensembl snoRNA 8511795 8511919   -   ID=transcript:ENST00000408156;Parent=gene:ENSG00000221083;Name=AL096855.1-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000408156;transcript_support_level=NA;version=1
2 1 ensembl snoRNA 12221148 12221271   -   ID=transcript:ENST00000517160;Parent=gene:ENSG00000252969;Name=SNORA70.22-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000517160;transcript_support_level=NA;version=1
3 1 ensembl snoRNA 12507246 12507397   +   ID=transcript:ENST00000459326;Parent=gene:ENSG00000239149;Name=SNORA59A-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000459326;transcript_support_level=NA;version=1
4 1 ensembl snoRNA 26642286 26642389   -   ID=transcript:ENST00000459201;Parent=gene:ENSG00000238316;Name=AL627082.2-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000459201;transcript_support_level=NA;version=1
5 1 ensembl snoRNA 28507366 28507571   +   ID=transcript:ENST00000364938;Parent=gene:ENSG00000274266;Name=SNORA73A-201;biotype=snoRNA;tag=basic;transcript_id=ENST00000364938;transcript_support_level=NA;version=1

First 5 observations from data set N.SNRNA

Obs seqid source type start end score strand phase attribute
1 1 ensembl snRNA 157784 157887   -   ID=transcript:ENST00000410691;Parent=gene:ENSG00000222623;Name=RNU6-1100P-201;biotype=snRNA;tag=basic;transcript_id=ENST00000410691;transcript_support_level=NA;version=1
2 1 ensembl snRNA 516376 516479   -   ID=transcript:ENST00000614007;Parent=gene:ENSG00000278757;Name=U6.90-201;biotype=snRNA;tag=basic;transcript_id=ENST00000614007;transcript_support_level=NA;version=1
3 1 ensembl snRNA 758233 758336   -   ID=transcript:ENST00000411249;Parent=gene:ENSG00000223181;Name=RNU6-1199P-201;biotype=snRNA;tag=basic;transcript_id=ENST00000411249;transcript_support_level=NA;version=1
4 1 ensembl snRNA 6540854 6540964   +   ID=transcript:ENST00000517213;Parent=gene:ENSG00000253022;Name=RNU6-731P-201;biotype=snRNA;tag=basic;transcript_id=ENST00000517213;transcript_support_level=NA;version=1
5 1 ensembl snRNA 7219360 7219524   +   ID=transcript:ENST00000384328;Parent=gene:ENSG00000207056;Name=RNU1-8P-201;biotype=snRNA;tag=basic;transcript_id=ENST00000384328;transcript_support_level=NA;version=1

First 5 observations from data set N.THREE_PRIME_UTR

Obs seqid source type start end score strand phase attribute
1 1 havana three_prime_UTR 70009 71585   +   Parent=transcript:ENST00000641515
2 1 ensembl three_prime_UTR 70009 70108   +   Parent=transcript:ENST00000335137
3 1 ensembl_h three_prime_UTR 450703 450739   -   Parent=transcript:ENST00000426406
4 1 ensembl_h three_prime_UTR 685679 685715   -   Parent=transcript:ENST00000332831
5 1 havana three_prime_UTR 944154 944574   +   Parent=transcript:ENST00000342066

First 5 observations from data set N.TRNA

Obs seqid source type start end score strand phase attribute
1 MT ensembl tRNA 577 647   +   ID=transcript:ENST00000387314;Parent=gene:ENSG00000210049;Name=MT-TF-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387314;transcript_support_level=NA;version=1
2 MT ensembl tRNA 1602 1670   +   ID=transcript:ENST00000387342;Parent=gene:ENSG00000210077;Name=MT-TV-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387342;transcript_support_level=NA;version=1
3 MT ensembl tRNA 3230 3304   +   ID=transcript:ENST00000386347;Parent=gene:ENSG00000209082;Name=MT-TL1-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000386347;transcript_support_level=NA;version=1
4 MT ensembl tRNA 4263 4331   +   ID=transcript:ENST00000387365;Parent=gene:ENSG00000210100;Name=MT-TI-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387365;transcript_support_level=NA;version=1
5 MT ensembl tRNA 4329 4400   -   ID=transcript:ENST00000387372;Parent=gene:ENSG00000210107;Name=MT-TQ-201;biotype=Mt_tRNA;tag=basic;transcript_id=ENST00000387372;transcript_support_level=NA;version=1

First 5 observations from data set N.UNCONFIRMED_TRANSCR

Obs seqid source type start end score strand phase attribute
1 1 havana unconfirmed_transcr 2566410 2569888   +   ID=transcript:ENST00000456687;Parent=gene:ENSG00000225931;Name=AL139246.2-201;biotype=TEC;tag=basic;transcript_id=ENST00000456687;transcript_support_level=5;version=3
2 1 havana unconfirmed_transcr 3205988 3208664   +   ID=transcript:ENST00000624175;Parent=gene:ENSG00000279839;Name=AL512383.1-201;biotype=TEC;tag=basic;transcript_id=ENST00000624175;transcript_support_level=NA;version=1
3 1 havana unconfirmed_transcr 9826289 9828271   -   ID=transcript:ENST00000639753;Parent=gene:ENSG00000280113;Name=AL357140.3-201;biotype=TEC;tag=basic;transcript_id=ENST00000639753;transcript_support_level=NA;version=1
4 1 ensembl unconfirmed_transcr 9827610 9828258   -   ID=transcript:ENST00000623863;Parent=gene:ENSG00000280113;Name=AL357140.3-202;biotype=TEC;transcript_id=ENST00000623863;transcript_support_level=NA;version=1
5 1 havana unconfirmed_transcr 18109389 18115861   +   ID=transcript:ENST00000624418;Parent=gene:ENSG00000280222;Name=AL365209.1-201;biotype=TEC;tag=basic;transcript_id=ENST00000624418;transcript_support_level=NA;version=1

First 5 observations from data set N.VAULTRNA_PRIMARY_TR

Obs seqid source type start end score strand phase attribute
1 5 havana vaultRNA_primary_tr 136080470 136080597   -   ID=transcript:ENST00000602301;Parent=gene:ENSG00000270123;Name=VTRNA2-1-201;biotype=vaultRNA;tag=basic;transcript_id=ENST00000602301;transcript_support_level=NA (assigned to previous version 1);version=2

First 5 observations from data set N.V_GENE_SEGMENT

Obs seqid source type start end score strand phase attribute
1 14 havana V_gene_segment 21621838 21622567   +   ID=transcript:ENST00000542354;Parent=gene:ENSG00000255569;Name=TRAV1-1-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000542354;transcript_support_level=NA;version=1
2 14 havana V_gene_segment 21642889 21643578   +   ID=transcript:ENST00000390423;Parent=gene:ENSG00000256553;Name=TRAV1-2-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000390423;transcript_support_level=NA;version=2
3 14 havana V_gene_segment 21712321 21712843   +   ID=transcript:ENST00000390424;Parent=gene:ENSG00000211776;Name=TRAV2-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000390424;transcript_support_level=NA;version=2
4 14 havana V_gene_segment 21723713 21724321   +   ID=transcript:ENST00000390425;Parent=gene:ENSG00000211777;Name=TRAV3-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000390425;transcript_support_level=NA;version=2
5 14 havana V_gene_segment 21736152 21736982   +   ID=transcript:ENST00000390426;Parent=gene:ENSG00000211778;Name=TRAV4-201;biotype=TR_V_gene;tag=basic;transcript_id=ENST00000390426;transcript_support_level=NA;version=2