Primera clase

Dataframes y relacionados

Manipulación de estructuras: https://rpubs.com/Cisco_Self_Serve/315139
Manipulación de estructuras: https://rpubs.com/williamsurles/292547
Manipulación de estructuras: https://rpubs.com/JoanClaverol/493728

Visualizaciones de datos

Gráficos: https://rpubs.com/rdelgado/429190
Gráficos: https://rpubs.com/RUsersGroup-Ecuador/ggplot2
Galería: https://www.r-graph-gallery.com/all-graphs.html

Segunda clase

Obtención y consulta de bases de datos

GEOquery: https://www.bioconductor.org/packages/release/bioc/vignettes/GEOquery/inst/doc/GEOquery.html
SRAdb: https://www.bioconductor.org/packages/release/bioc/vignettes/SRAdb/inst/doc/SRAdb.pdf
Conexión y queries tipo SQL: https://datacarpentry.org/R-ecology-lesson/05-r-and-databases.html
Conexión y queries tipo SQL: https://www.r-bloggers.com/a-comprehensive-introduction-to-working-with-databases-using-r/
(NUEVO) HIGH-THROUGHPUT MULTI-OMIC DATA: https://github.com/ss-lab-cancerunit/SpiderSeqR
(NUEVO) paper HIGH-THROUGHPUT MULTI-OMIC DATA: https://www.biorxiv.org/content/10.1101/2020.04.13.039420v1.full.pdf

Expresión diferencial y reducción de dimensionalidad

RNA-seq exploratory analysis and differential expression: https://bioconductor.org/packages/release/workflows/vignettes/rnaseqGene/inst/doc/rnaseqGene.html
Analyzing RNA-seq data with DESeq2: http://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html
Volcano plots: https://bioconductor.org/packages/devel/bioc/vignettes/EnhancedVolcano/inst/doc/EnhancedVolcano.html
Principal Component Analysis: https://bioconductor.org/packages/release/bioc/vignettes/PCAtools/inst/doc/PCAtools.html

Tercera clase

Meta-análisis

Meta-analysis tool: https://bioconductor.org/packages/release/bioc/vignettes/MetaVolcanoR/inst/doc/MetaVolcano.html

single-cell RNA-seq:

(NUEVO) Analysis of single-cell RNA-seq data (incluye clustering tipo kmeans): https://osca.bioconductor.org/index.html