(Pre)processing. Data here has been preprocessed with new dmriprep, and uses current parameters delinated in github.com/navonacalarco/Slicer.

Participants. We selected 6 SPINS participants randomly (1 from each site). The ‘EXAMPLE’ participant is a HCP healthy control from a Slicer tutorial (note: this participant underwent two-tensor UKF tractography)

ORG atlas. For reference, the ORG atlas has 11 (bilateral) fiber bundles that make up the AF (the final image is all combined):

Participant images. Note: these images were created with the whitematteranalysis script wm_quality_control_tractography.py.


anterior – | – inferior – | – left – | – posterior – | – right – | – superior

CMH0135

CMP0180

MRC0055

MRP0081

ZHH0021

ZHH0134

EXAMPLE

Related documents.
registration to atlas
visualization of all tracts
right AF
left AF
right UF
left UF
right ILF
left UF