R Notebook

install.packages(c("tidyverse", "sf"))

Installing packages into ‘/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
also installing the dependencies ‘desc’, ‘pkgbuild’, ‘rprojroot’, ‘pkgload’, ‘praise’, ‘colorspace’, ‘sys’, ‘ps’, ‘plyr’, ‘testthat’, ‘farver’, ‘labeling’, ‘munsell’, ‘RColorBrewer’, ‘viridisLite’, ‘askpass’, ‘rematch’, ‘prettyunits’, ‘processx’, ‘backports’, ‘generics’, ‘reshape2’, ‘assertthat’, ‘fansi’, ‘R6’, ‘tidyselect’, ‘ellipsis’, ‘pkgconfig’, ‘BH’, ‘plogr’, ‘gtable’, ‘isoband’, ‘scales’, ‘withr’, ‘vctrs’, ‘curl’, ‘openssl’, ‘utf8’, ‘clipr’, ‘cellranger’, ‘progress’, ‘callr’, ‘fs’, ‘whisker’, ‘selectr’, ‘lifecycle’, ‘e1071’, ‘broom’, ‘cli’, ‘crayon’, ‘dbplyr’, ‘dplyr’, ‘forcats’, ‘ggplot2’, ‘haven’, ‘hms’, ‘httr’, ‘lubridate’, ‘modelr’, ‘pillar’, ‘purrr’, ‘readr’, ‘readxl’, ‘reprex’, ‘rstudioapi’, ‘rvest’, ‘tibble’, ‘tidyr’, ‘xml2’, ‘classInt’, ‘DBI’, ‘units’

trying URL 'http://package-proxy/src/contrib/desc_1.2.0.tar.gz'
Content type 'application/x-tar' length 283415 bytes (276 KB)
==================================================
downloaded 276 KB

trying URL 'http://package-proxy/src/contrib/pkgbuild_1.0.6.tar.gz'
Content type 'application/x-tar' length 135229 bytes (132 KB)
==================================================
downloaded 132 KB

trying URL 'http://package-proxy/src/contrib/rprojroot_1.3-2.tar.gz'
Content type 'application/x-tar' length 79827 bytes (77 KB)
==================================================
downloaded 77 KB

trying URL 'http://package-proxy/src/contrib/pkgload_1.0.2.tar.gz'
Content type 'application/x-tar' length 147370 bytes (143 KB)
==================================================
downloaded 143 KB

trying URL 'http://package-proxy/src/contrib/praise_1.0.0.tar.gz'
Content type 'application/x-tar' length 16409 bytes (16 KB)
==================================================
downloaded 16 KB

trying URL 'http://package-proxy/src/contrib/colorspace_1.4-1.tar.gz'
Content type 'application/x-tar' length 2517825 bytes (2.4 MB)
==================================================
downloaded 2.4 MB

trying URL 'http://package-proxy/src/contrib/sys_3.3.tar.gz'
Content type 'application/x-tar' length 52811 bytes (51 KB)
==================================================
downloaded 51 KB

trying URL 'http://package-proxy/src/contrib/ps_1.3.2.tar.gz'
Content type 'application/x-tar' length 264667 bytes (258 KB)
==================================================
downloaded 258 KB

trying URL 'http://package-proxy/src/contrib/plyr_1.8.6.tar.gz'
Content type 'application/x-tar' length 1071880 bytes (1.0 MB)
==================================================
downloaded 1.0 MB

trying URL 'http://package-proxy/src/contrib/testthat_2.3.2.tar.gz'
Content type 'application/x-tar' length 2143966 bytes (2.0 MB)
==================================================
downloaded 2.0 MB

trying URL 'http://package-proxy/src/contrib/farver_2.0.3.tar.gz'
Content type 'application/x-tar' length 1823786 bytes (1.7 MB)
==================================================
downloaded 1.7 MB

trying URL 'http://package-proxy/src/contrib/labeling_0.3.tar.gz'
Content type 'application/x-tar' length 60617 bytes (59 KB)
==================================================
downloaded 59 KB

trying URL 'http://package-proxy/src/contrib/munsell_0.5.0.tar.gz'
Content type 'application/x-tar' length 244364 bytes (238 KB)
==================================================
downloaded 238 KB

trying URL 'http://package-proxy/src/contrib/RColorBrewer_1.1-2.tar.gz'
Content type 'application/x-tar' length 52748 bytes (51 KB)
==================================================
downloaded 51 KB

trying URL 'http://package-proxy/src/contrib/viridisLite_0.3.0.tar.gz'
Content type 'application/x-tar' length 57332 bytes (55 KB)
==================================================
downloaded 55 KB

trying URL 'http://package-proxy/src/contrib/askpass_1.1.tar.gz'
Content type 'application/x-tar' length 22665 bytes (22 KB)
==================================================
downloaded 22 KB

trying URL 'http://package-proxy/src/contrib/rematch_1.0.1.tar.gz'
Content type 'application/x-tar' length 12262 bytes (11 KB)
==================================================
downloaded 11 KB

trying URL 'http://package-proxy/src/contrib/prettyunits_1.1.1.tar.gz'
Content type 'application/x-tar' length 34970 bytes (34 KB)
==================================================
downloaded 34 KB

trying URL 'http://package-proxy/src/contrib/processx_3.4.2.tar.gz'
Content type 'application/x-tar' length 340355 bytes (332 KB)
==================================================
downloaded 332 KB

trying URL 'http://package-proxy/src/contrib/backports_1.1.5.tar.gz'
Content type 'application/x-tar' length 57969 bytes (56 KB)
==================================================
downloaded 56 KB

trying URL 'http://package-proxy/src/contrib/generics_0.0.2.tar.gz'
Content type 'application/x-tar' length 62261 bytes (60 KB)
==================================================
downloaded 60 KB

trying URL 'http://package-proxy/src/contrib/reshape2_1.4.3.tar.gz'
Content type 'application/x-tar' length 479147 bytes (467 KB)
==================================================
downloaded 467 KB

trying URL 'http://package-proxy/src/contrib/assertthat_0.2.1.tar.gz'
Content type 'application/x-tar' length 53335 bytes (52 KB)
==================================================
downloaded 52 KB

trying URL 'http://package-proxy/src/contrib/fansi_0.4.1.tar.gz'
Content type 'application/x-tar' length 231812 bytes (226 KB)
==================================================
downloaded 226 KB

trying URL 'http://package-proxy/src/contrib/R6_2.4.1.tar.gz'
Content type 'application/x-tar' length 57377 bytes (56 KB)
==================================================
downloaded 56 KB

trying URL 'http://package-proxy/src/contrib/tidyselect_1.0.0.tar.gz'
Content type 'application/x-tar' length 243033 bytes (237 KB)
==================================================
downloaded 237 KB

trying URL 'http://package-proxy/src/contrib/ellipsis_0.3.0.tar.gz'
Content type 'application/x-tar' length 35058 bytes (34 KB)
==================================================
downloaded 34 KB

trying URL 'http://package-proxy/src/contrib/pkgconfig_2.0.3.tar.gz'
Content type 'application/x-tar' length 17546 bytes (17 KB)
==================================================
downloaded 17 KB

trying URL 'http://package-proxy/src/contrib/BH_1.72.0-3.tar.gz'
Content type 'application/x-tar' length 11552789 bytes (11.0 MB)
==================================================
downloaded 11.0 MB

trying URL 'http://package-proxy/src/contrib/plogr_0.2.0.tar.gz'
Content type 'application/x-tar' length 12637 bytes (12 KB)
==================================================
downloaded 12 KB

trying URL 'http://package-proxy/src/contrib/gtable_0.3.0.tar.gz'
Content type 'application/x-tar' length 435428 bytes (425 KB)
==================================================
downloaded 425 KB

trying URL 'http://package-proxy/src/contrib/isoband_0.2.0.tar.gz'
Content type 'application/x-tar' length 4016491 bytes (3.8 MB)
==================================================
downloaded 3.8 MB

trying URL 'http://package-proxy/src/contrib/scales_1.1.0.tar.gz'
Content type 'application/x-tar' length 548127 bytes (535 KB)
==================================================
downloaded 535 KB

trying URL 'http://package-proxy/src/contrib/withr_2.1.2.tar.gz'
Content type 'application/x-tar' length 150493 bytes (146 KB)
==================================================
downloaded 146 KB

trying URL 'http://package-proxy/src/contrib/vctrs_0.2.4.tar.gz'
Content type 'application/x-tar' length 1131156 bytes (1.1 MB)
==================================================
downloaded 1.1 MB

trying URL 'http://package-proxy/src/contrib/curl_4.3.tar.gz'
Content type 'application/x-tar' length 765498 bytes (747 KB)
==================================================
downloaded 747 KB

trying URL 'http://package-proxy/src/contrib/openssl_1.4.1.tar.gz'
Content type 'application/x-tar' length 1398972 bytes (1.3 MB)
==================================================
downloaded 1.3 MB

trying URL 'http://package-proxy/src/contrib/utf8_1.1.4.tar.gz'
Content type 'application/x-tar' length 215602 bytes (210 KB)
==================================================
downloaded 210 KB

trying URL 'http://package-proxy/src/contrib/clipr_0.7.0.tar.gz'
Content type 'application/x-tar' length 47538 bytes (46 KB)
==================================================
downloaded 46 KB

trying URL 'http://package-proxy/src/contrib/cellranger_1.1.0.tar.gz'
Content type 'application/x-tar' length 101297 bytes (98 KB)
==================================================
downloaded 98 KB

trying URL 'http://package-proxy/src/contrib/progress_1.2.2.tar.gz'
Content type 'application/x-tar' length 82967 bytes (81 KB)
==================================================
downloaded 81 KB

trying URL 'http://package-proxy/src/contrib/callr_3.4.2.tar.gz'
Content type 'application/x-tar' length 388672 bytes (379 KB)
==================================================
downloaded 379 KB

trying URL 'http://package-proxy/src/contrib/fs_1.3.2.tar.gz'
Content type 'application/x-tar' length 1184441 bytes (1.1 MB)
==================================================
downloaded 1.1 MB

trying URL 'http://package-proxy/src/contrib/whisker_0.4.tar.gz'
Content type 'application/x-tar' length 67611 bytes (66 KB)
==================================================
downloaded 66 KB

trying URL 'http://package-proxy/src/contrib/selectr_0.4-2.tar.gz'
Content type 'application/x-tar' length 491412 bytes (479 KB)
==================================================
downloaded 479 KB

trying URL 'http://package-proxy/src/contrib/lifecycle_0.2.0.tar.gz'
Content type 'application/x-tar' length 94594 bytes (92 KB)
==================================================
downloaded 92 KB

trying URL 'http://package-proxy/src/contrib/e1071_1.7-3.tar.gz'
Content type 'application/x-tar' length 886551 bytes (865 KB)
==================================================
downloaded 865 KB

trying URL 'http://package-proxy/src/contrib/broom_0.5.5.tar.gz'
Content type 'application/x-tar' length 1965525 bytes (1.9 MB)
==================================================
downloaded 1.9 MB

trying URL 'http://package-proxy/src/contrib/cli_2.0.2.tar.gz'
Content type 'application/x-tar' length 391514 bytes (382 KB)
==================================================
downloaded 382 KB

trying URL 'http://package-proxy/src/contrib/crayon_1.3.4.tar.gz'
Content type 'application/x-tar' length 749180 bytes (731 KB)
==================================================
downloaded 731 KB

trying URL 'http://package-proxy/src/contrib/dbplyr_1.4.2.tar.gz'
Content type 'application/x-tar' length 586467 bytes (572 KB)
==================================================
downloaded 572 KB

trying URL 'http://package-proxy/src/contrib/dplyr_0.8.5.tar.gz'
Content type 'application/x-tar' length 9385018 bytes (9.0 MB)
==================================================
downloaded 9.0 MB

trying URL 'http://package-proxy/src/contrib/forcats_0.5.0.tar.gz'
Content type 'application/x-tar' length 355234 bytes (346 KB)
==================================================
downloaded 346 KB

trying URL 'http://package-proxy/src/contrib/ggplot2_3.3.0.tar.gz'
Content type 'application/x-tar' length 4027650 bytes (3.8 MB)
==================================================
downloaded 3.8 MB

trying URL 'http://package-proxy/src/contrib/haven_2.2.0.tar.gz'
Content type 'application/x-tar' length 1321233 bytes (1.3 MB)
==================================================
downloaded 1.3 MB

trying URL 'http://package-proxy/src/contrib/hms_0.5.3.tar.gz'
Content type 'application/x-tar' length 103278 bytes (100 KB)
==================================================
downloaded 100 KB

trying URL 'http://package-proxy/src/contrib/httr_1.4.1.tar.gz'
Content type 'application/x-tar' length 508792 bytes (496 KB)
==================================================
downloaded 496 KB

trying URL 'http://package-proxy/src/contrib/lubridate_1.7.4.tar.gz'
Content type 'application/x-tar' length 1735957 bytes (1.7 MB)
==================================================
downloaded 1.7 MB

trying URL 'http://package-proxy/src/contrib/modelr_0.1.6.tar.gz'
Content type 'application/x-tar' length 201389 bytes (196 KB)
==================================================
downloaded 196 KB

trying URL 'http://package-proxy/src/contrib/pillar_1.4.3.tar.gz'
Content type 'application/x-tar' length 178991 bytes (174 KB)
==================================================
downloaded 174 KB

trying URL 'http://package-proxy/src/contrib/purrr_0.3.3.tar.gz'
Content type 'application/x-tar' length 428144 bytes (418 KB)
==================================================
downloaded 418 KB

trying URL 'http://package-proxy/src/contrib/readr_1.3.1.tar.gz'
Content type 'application/x-tar' length 4886928 bytes (4.7 MB)
==================================================
downloaded 4.7 MB

trying URL 'http://package-proxy/src/contrib/readxl_1.3.1.tar.gz'
Content type 'application/x-tar' length 2221031 bytes (2.1 MB)
==================================================
downloaded 2.1 MB

trying URL 'http://package-proxy/src/contrib/reprex_0.3.0.tar.gz'
Content type 'application/x-tar' length 425385 bytes (415 KB)
==================================================
downloaded 415 KB

trying URL 'http://package-proxy/src/contrib/rstudioapi_0.11.tar.gz'
Content type 'application/x-tar' length 256986 bytes (250 KB)
==================================================
downloaded 250 KB

trying URL 'http://package-proxy/src/contrib/rvest_0.3.5.tar.gz'
Content type 'application/x-tar' length 661623 bytes (646 KB)
==================================================
downloaded 646 KB

trying URL 'http://package-proxy/src/contrib/tibble_2.1.3.tar.gz'
Content type 'application/x-tar' length 324659 bytes (317 KB)
==================================================
downloaded 317 KB

trying URL 'http://package-proxy/src/contrib/tidyr_1.0.2.tar.gz'
Content type 'application/x-tar' length 1360357 bytes (1.3 MB)
==================================================
downloaded 1.3 MB

trying URL 'http://package-proxy/src/contrib/xml2_1.2.5.tar.gz'
Content type 'application/x-tar' length 1739534 bytes (1.7 MB)
==================================================
downloaded 1.7 MB

trying URL 'http://package-proxy/src/contrib/classInt_0.4-2.tar.gz'
Content type 'application/x-tar' length 78208 bytes (76 KB)
==================================================
downloaded 76 KB

trying URL 'http://package-proxy/src/contrib/DBI_1.1.0.tar.gz'
Content type 'application/x-tar' length 593919 bytes (579 KB)
==================================================
downloaded 579 KB

trying URL 'http://package-proxy/src/contrib/units_0.6-6.tar.gz'
Content type 'application/x-tar' length 1380242 bytes (1.3 MB)
==================================================
downloaded 1.3 MB

trying URL 'http://package-proxy/src/contrib/tidyverse_1.3.0.tar.gz'
Content type 'application/x-tar' length 437467 bytes (427 KB)
==================================================
downloaded 427 KB

trying URL 'http://cran.rstudio.org/src/contrib/sf_0.9-0.tar.gz'
Content type 'application/x-gzip' length 8474738 bytes (8.1 MB)
==================================================
downloaded 8.1 MB

* installing *binary* package ‘praise’ ...
* DONE (praise)
* installing *binary* package ‘colorspace’ ...
* DONE (colorspace)
* installing *binary* package ‘sys’ ...
* DONE (sys)
* installing *binary* package ‘ps’ ...
* DONE (ps)
* installing *binary* package ‘plyr’ ...
* DONE (plyr)
* installing *binary* package ‘farver’ ...
* DONE (farver)
* installing *binary* package ‘labeling’ ...
* DONE (labeling)
* installing *binary* package ‘RColorBrewer’ ...
* DONE (RColorBrewer)
* installing *binary* package ‘viridisLite’ ...
* DONE (viridisLite)
* installing *binary* package ‘rematch’ ...
* DONE (rematch)
* installing *binary* package ‘prettyunits’ ...
* DONE (prettyunits)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘generics’ ...
* DONE (generics)
* installing *binary* package ‘assertthat’ ...
* DONE (assertthat)
* installing *binary* package ‘fansi’ ...
* DONE (fansi)
* installing *binary* package ‘R6’ ...
* DONE (R6)
* installing *binary* package ‘ellipsis’ ...
* DONE (ellipsis)
* installing *binary* package ‘pkgconfig’ ...
* DONE (pkgconfig)
* installing *binary* package ‘BH’ ...
* DONE (BH)
* installing *binary* package ‘plogr’ ...
* DONE (plogr)
* installing *binary* package ‘gtable’ ...
* DONE (gtable)
* installing *binary* package ‘withr’ ...
* DONE (withr)
* installing *binary* package ‘curl’ ...
* DONE (curl)
* installing *binary* package ‘utf8’ ...
* DONE (utf8)
* installing *binary* package ‘clipr’ ...
* DONE (clipr)
* installing *binary* package ‘fs’ ...
* DONE (fs)
* installing *binary* package ‘whisker’ ...
* DONE (whisker)
* installing *binary* package ‘lifecycle’ ...
* DONE (lifecycle)
* installing *binary* package ‘e1071’ ...
* DONE (e1071)
* installing *binary* package ‘crayon’ ...
* DONE (crayon)
* installing *binary* package ‘lubridate’ ...
* DONE (lubridate)
* installing *binary* package ‘purrr’ ...
* DONE (purrr)
* installing *binary* package ‘rstudioapi’ ...
* DONE (rstudioapi)
* installing *binary* package ‘xml2’ ...
* DONE (xml2)
* installing *binary* package ‘DBI’ ...
* DONE (DBI)
* installing *binary* package ‘units’ ...
* DONE (units)
* installing *binary* package ‘rprojroot’ ...
* DONE (rprojroot)
* installing *binary* package ‘munsell’ ...
* DONE (munsell)
* installing *binary* package ‘askpass’ ...
* DONE (askpass)
* installing *binary* package ‘processx’ ...
* DONE (processx)
* installing *binary* package ‘reshape2’ ...
* DONE (reshape2)
* installing *binary* package ‘vctrs’ ...
* DONE (vctrs)
* installing *binary* package ‘selectr’ ...
* DONE (selectr)
* installing *binary* package ‘cli’ ...
* DONE (cli)
* installing *binary* package ‘classInt’ ...
* DONE (classInt)
* installing *binary* package ‘desc’ ...
* DONE (desc)
* installing *binary* package ‘tidyselect’ ...
* DONE (tidyselect)
* installing *binary* package ‘scales’ ...
* DONE (scales)
* installing *binary* package ‘openssl’ ...
* DONE (openssl)
* installing *binary* package ‘callr’ ...
* DONE (callr)
* installing *binary* package ‘hms’ ...
* DONE (hms)
* installing *binary* package ‘pillar’ ...
* DONE (pillar)
* installing *source* package ‘sf’ ...
** package ‘sf’ successfully unpacked and MD5 sums checked
** using staged installation

configure: CC: gcc
configure: CXX: g++ -std=gnu++11
checking for gdal-config... /usr/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 2.2.2
checking GDAL version >= 2.0.1... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking gdal.h usability... yes
checking gdal.h presence... yes
checking for gdal.h... yes
checking GDAL: linking with --libs only... yes
checking GDAL: /usr/share/gdal/2.2/pcs.csv readable... yes
checking GDAL: checking whether PROJ is available for linking:... yes
checking GDAL: checking whether PROJ is available fur running:... yes
configure: GDAL: 2.2.2
configure: pkg-config proj exists, will use it
checking proj_api.h usability... yes
checking proj_api.h presence... yes
checking for proj_api.h... yes
configure: PROJ: 4.9.2
checking for pj_init_plus in -lproj... yes
checking PROJ: epsg found and readable... yes
checking for geos-config... /usr/bin/geos-config
checking geos-config usability... yes
configure: GEOS: 3.5.1
checking GEOS version >= 3.4.0... yes
checking geos_c.h usability... yes
checking geos_c.h presence... yes
checking for geos_c.h... yes
checking geos: linking with -L/usr/lib/x86_64-linux-gnu -lgeos_c... yes
configure: Package CPP flags:   -I/usr/include/gdal -I/usr/include
configure: Package LIBS: -lproj   -L/usr/lib -lgdal -L/usr/lib/x86_64-linux-gnu -lgeos_c
configure: creating ./config.status
config.status: creating src/Makevars

** libs

g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c bbox.cpp -o bbox.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c gdal.cpp -o gdal.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c gdal_geom.cpp -o gdal_geom.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c gdal_read.cpp -o gdal_read.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c gdal_utils.cpp -o gdal_utils.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c gdal_write.cpp -o gdal_write.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c geos.cpp -o geos.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c hex.cpp -o hex.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c ops.cpp -o ops.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c polygonize.cpp -o polygonize.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c proj.cpp -o proj.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c proj_info.cpp -o proj_info.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c raster2sf.cpp -o raster2sf.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c sfg.cpp -o sfg.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c signed_area.cpp -o signed_area.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c stars.cpp -o stars.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c wkb.cpp -o wkb.o
g++ -std=gnu++11 -I"/opt/R/3.6.0/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I"/home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -c zm_range.cpp -o zm_range.o
g++ -std=gnu++11 -shared -L/opt/R/3.6.0/lib/R/lib -L/usr/local/lib -o sf.so RcppExports.o bbox.o gdal.o gdal_geom.o gdal_read.o gdal_utils.o gdal_write.o geos.o hex.o ops.o polygonize.o proj.o proj_info.o raster2sf.o sfg.o signed_area.o stars.o wkb.o zm_range.o -lproj -L/usr/lib -lgdal -L/usr/lib/x86_64-linux-gnu -lgeos_c -L/opt/R/3.6.0/lib/R/lib -lR

installing to /home/rstudio-user/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-sf/00new/sf/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading

in method for ‘dbWriteTable’ with signature ‘"PostgreSQLConnection","character","sf"’: no definition for class “PostgreSQLConnection”
in method for ‘dbDataType’ with signature ‘"PostgreSQLConnection","sf"’: no definition for class “PostgreSQLConnection”
in method for ‘coerce’ with signature ‘"Spatial","sf"’: no definition for class “Spatial”
in method for ‘coerce’ with signature ‘"Spatial","sfc"’: no definition for class “Spatial”
in method for ‘coerce’ with signature ‘"sf","Spatial"’: no definition for class “Spatial”
in method for ‘coerce’ with signature ‘"sfc","Spatial"’: no definition for class “Spatial”
in method for ‘coerce’ with signature ‘"XY","Spatial"’: no definition for class “Spatial”
in method for ‘coerce’ with signature ‘"crs","CRS"’: no definition for class “CRS”

** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sf)
* installing *binary* package ‘pkgbuild’ ...
* DONE (pkgbuild)
* installing *binary* package ‘progress’ ...
* DONE (progress)
* installing *binary* package ‘httr’ ...
* DONE (httr)
* installing *binary* package ‘reprex’ ...
* DONE (reprex)
* installing *binary* package ‘tibble’ ...
* DONE (tibble)
* installing *binary* package ‘pkgload’ ...
* DONE (pkgload)
* installing *binary* package ‘cellranger’ ...
* DONE (cellranger)
* installing *binary* package ‘dplyr’ ...
* DONE (dplyr)
* installing *binary* package ‘forcats’ ...
* DONE (forcats)
* installing *binary* package ‘readr’ ...
* DONE (readr)
* installing *binary* package ‘rvest’ ...
* DONE (rvest)
* installing *binary* package ‘testthat’ ...
* DONE (testthat)
* installing *binary* package ‘dbplyr’ ...
* DONE (dbplyr)
* installing *binary* package ‘haven’ ...
* DONE (haven)
* installing *binary* package ‘readxl’ ...
* DONE (readxl)
* installing *binary* package ‘tidyr’ ...
* DONE (tidyr)
* installing *binary* package ‘isoband’ ...
* DONE (isoband)
* installing *binary* package ‘broom’ ...
* DONE (broom)
* installing *binary* package ‘ggplot2’ ...
* DONE (ggplot2)
* installing *binary* package ‘modelr’ ...
* DONE (modelr)
* installing *binary* package ‘tidyverse’ ...
* DONE (tidyverse)

The downloaded source packages are in
    ‘/tmp/Rtmpc1rlTE/downloaded_packages’

library(tidyverse)

Registered S3 method overwritten by 'dplyr':
  method           from
  print.rowwise_df     
Registered S3 methods overwritten by 'dbplyr':
  method         from
  print.tbl_lazy     
  print.tbl_sql      
[30m── [1mAttaching packages[22m ──────────────────────── tidyverse 1.3.0 ──[39m
[30m[32m✓[30m [34mggplot2[30m 3.3.0     [32m✓[30m [34mpurrr  [30m 0.3.3
[32m✓[30m [34mtibble [30m 2.1.3     [32m✓[30m [34mdplyr  [30m 0.8.5
[32m✓[30m [34mtidyr  [30m 1.0.2     [32m✓[30m [34mstringr[30m 1.4.0
[32m✓[30m [34mreadr  [30m 1.3.1     [32m✓[30m [34mforcats[30m 0.5.0[39m
[30m── [1mConflicts[22m ─────────────────────────── tidyverse_conflicts() ──
[31mx[30m [34mdplyr[30m::[32mfilter()[30m masks [34mstats[30m::filter()
[31mx[30m [34mdplyr[30m::[32mlag()[30m    masks [34mstats[30m::lag()[39m

library(sf)

Linking to GEOS 3.5.1, GDAL 2.2.2, PROJ 4.9.2

deptos <-  read_sf("./COL_adm1.shp")

head(deptos)

Simple feature collection with 6 features and 9 fields
geometry type:  MULTIPOLYGON
dimension:      XY
bbox:           xmin: -77.149 ymin: -4.228429 xmax: -69.36835 ymax: 11.10792
CRS:            4326

st_crs(deptos)

Coordinate Reference System:
  User input: 4326 
  wkt:
GEOGCS["GCS_WGS_1984",
    DATUM["WGS_1984",
        SPHEROID["WGS_84",6378137.0,298.257223563]],
    PRIMEM["Greenwich",0.0],
    UNIT["Degree",0.0174532925199433],
    AUTHORITY["EPSG","4326"]]

LS0tCnRpdGxlOiAiUiBOb3RlYm9vayIKb3V0cHV0OiBodG1sX25vdGVib29rCi0tLQoKYGBge3J9Cmluc3RhbGwucGFja2FnZXMoYygidGlkeXZlcnNlIiwgInNmIikpCmBgYApgYGB7cn0KbGlicmFyeSh0aWR5dmVyc2UpCmBgYApgYGB7cn0KbGlicmFyeShzZikKYGBgCgpgYGB7cn0KZGVwdG9zIDwtICByZWFkX3NmKCIuL0NPTF9hZG0xLnNocCIpCmBgYAoKYGBge3J9CmhlYWQoZGVwdG9zKQpgYGAKYGBge3J9CnN0X2NycyhkZXB0b3MpCmBgYAoK