Smoothness Estimation, part 6

Qingyang Li | Qingyang.Li@Childmind.org

List of the smoothness estimation

By far, we have generated 6 Smoothness estimation reports, That are:

Target smoothness when using 3dBlurTOFWHM

The target smoothness for each derivative is listed below

Code and reports

Note: the code below is just for plot and sumarroize the estimated smoothness. The code which I used to estimate the smoothness is not here (but here)

df_Smoothed_sub = read.csv("/home2/data/Projects/NKI_TRT_paper/NewAnalysisWithCPAC/Smoothestimation/SmoothnessofDerivatives_Smoothed_estimated_byAFNI_detrend_sub.csv")

# here we only show the data for one of the strategy
df_Smoothed_sub = subset(df_Smoothed_sub, df_Smoothed_sub$pipeline == "pipeline_NewStrawn" & 
    (df_Smoothed_sub$scan == "mx_1400_First5Min" | df_Smoothed_sub$scan == "mx_1400_First5MinDS" | 
        df_Smoothed_sub$scan == "mx_1400_First5MinDSNF" | df_Smoothed_sub$scan == 
        "mx_645_First5Min" | df_Smoothed_sub$scan == "mx_645_First5MinDS" | 
        df_Smoothed_sub$scan == "mx_645_First5MinDSNF" | df_Smoothed_sub$scan == 
        "std_2500"))

# df_Smoothed_grp =
# read.csv('/home2/data/Projects/NKI_TRT_paper/NewAnalysisWithCPAC/Smoothestimation/SmoothnessofDerivatives_Smoothed_estimated_byAFNI_detrend_grp.csv')

# here we only show the data for one of the strategy df_Smoothed_grp =
# subset(df_Smoothed_grp, df_Smoothed_grp$pipeline == 'pipeline_NewStrawn'
# & (df_Smoothed_grp$scan == 'mx_1400_First5Min' | df_Smoothed_grp$scan ==
# 'mx_1400_First5MinDS' | df_Smoothed_grp$scan == 'mx_1400_First5MinDSNF'
# |df_Smoothed_grp$scan == 'mx_645_First5Min' | df_Smoothed_grp$scan ==
# 'mx_645_First5MinDS' | df_Smoothed_grp$scan == 'mx_645_First5MinDSNF'
# |df_Smoothed_grp$scan == 'std_2500') )

# df_Smoothed_grp$session = as.factor(df_Smoothed_grp$session)
df_Smoothed_sub$session = as.factor(df_Smoothed_sub$session)
df_Smoothed_sub$subid = as.factor(df_Smoothed_sub$subid)


summary(df_Smoothed_sub)
##                    pipeline                       scan     
##  pipeline_NewStrawn    :9548   mx_1400_First5Min    :1364  
##  pipeline_WoodworthTown:   0   mx_1400_First5MinDS  :1364  
##                                mx_1400_First5MinDSNF:1364  
##                                mx_645_First5Min     :1364  
##                                mx_645_First5MinDS   :1364  
##                                mx_645_First5MinDSNF :1364  
##                                (Other)              :1364  
##                         derivative   session      subid     
##  alff                        : 308   1:4774   21002  : 434  
##  degree_centrality_binarize  : 308   2:4774   21006  : 434  
##  degree_centrality_weighted  : 308            21018  : 434  
##  falff                       : 308            21024  : 434  
##  reho                        : 308            1427581: 434  
##  sca_roi_PNAS_smith10_plus5_1: 308            1793622: 434  
##  (Other)                     :7700            (Other):6944  
##      FWHMx           FWHMy           FWHMz      
##  Min.   : 0.00   Min.   : 3.82   Min.   : 0.00  
##  1st Qu.: 6.03   1st Qu.: 5.85   1st Qu.: 5.85  
##  Median : 6.48   Median : 6.28   Median : 6.37  
##  Mean   : 6.86   Mean   : 6.53   Mean   : 6.62  
##  3rd Qu.: 7.03   3rd Qu.: 6.83   3rd Qu.: 6.97  
##  Max.   :18.37   Max.   :13.96   Max.   :98.97  
## 
# summary(df_Smoothed_grp)
for (i in derivs) {
    print(plotDeriv_sub(df_Smoothed_sub, i, "x", outSummary = "on"))
    # print(plotDeriv_grp(df_Smoothed_grp,i, 'x', outSummary = 'on'))
    print(plotDeriv_sub(df_Smoothed_sub, i, "y"))
    # print(plotDeriv_grp(df_Smoothed_grp,i, 'y'))
    print(plotDeriv_sub(df_Smoothed_sub, i, "z"))
    # print(plotDeriv_grp(df_Smoothed_grp,i, 'z'))
}
##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                         derivative  session     subid         FWHMx     
##  alff                        :308   1:154   21002  : 14   Min.   :4.49  
##  degree_centrality_binarize  :  0   2:154   21006  : 14   1st Qu.:5.80  
##  degree_centrality_weighted  :  0           21018  : 14   Median :6.23  
##  falff                       :  0           21024  : 14   Mean   :6.25  
##  reho                        :  0           1427581: 14   3rd Qu.:6.72  
##  sca_roi_PNAS_smith10_plus5_1:  0           1793622: 14   Max.   :8.28  
##  (Other)                     :  0           (Other):224                 
##      FWHMy          FWHMz     
##  Min.   :3.82   Min.   :4.26  
##  1st Qu.:5.03   1st Qu.:5.58  
##  Median :5.48   Median :5.97  
##  Mean   :5.47   Mean   :5.91  
##  3rd Qu.:5.94   3rd Qu.:6.29  
##  Max.   :6.76   Max.   :6.96  
## 

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                         derivative  session     subid         FWHMx      
##  degree_centrality_binarize  :308   1:154   21002  : 14   Min.   : 7.37  
##  alff                        :  0   2:154   21006  : 14   1st Qu.:10.05  
##  degree_centrality_weighted  :  0           21018  : 14   Median :10.52  
##  falff                       :  0           21024  : 14   Mean   :10.68  
##  reho                        :  0           1427581: 14   3rd Qu.:11.28  
##  sca_roi_PNAS_smith10_plus5_1:  0           1793622: 14   Max.   :15.84  
##  (Other)                     :  0           (Other):224                  
##      FWHMy           FWHMz      
##  Min.   : 7.20   Min.   : 7.07  
##  1st Qu.: 8.80   1st Qu.: 8.96  
##  Median : 9.19   Median : 9.63  
##  Mean   : 9.21   Mean   : 9.77  
##  3rd Qu.: 9.62   3rd Qu.:10.47  
##  Max.   :11.27   Max.   :24.79  
## 

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                         derivative  session     subid         FWHMx      
##  degree_centrality_weighted  :308   1:154   21002  : 14   Min.   : 7.22  
##  alff                        :  0   2:154   21006  : 14   1st Qu.: 9.96  
##  degree_centrality_binarize  :  0           21018  : 14   Median :10.54  
##  falff                       :  0           21024  : 14   Mean   :10.65  
##  reho                        :  0           1427581: 14   3rd Qu.:11.15  
##  sca_roi_PNAS_smith10_plus5_1:  0           1793622: 14   Max.   :16.79  
##  (Other)                     :  0           (Other):224                  
##      FWHMy           FWHMz      
##  Min.   : 7.11   Min.   : 6.90  
##  1st Qu.: 8.80   1st Qu.: 8.83  
##  Median : 9.19   Median : 9.48  
##  Mean   : 9.21   Mean   : 9.54  
##  3rd Qu.: 9.63   3rd Qu.:10.15  
##  Max.   :10.91   Max.   :13.34  
## 

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                         derivative  session     subid         FWHMx     
##  falff                       :308   1:154   21002  : 14   Min.   :5.00  
##  alff                        :  0   2:154   21006  : 14   1st Qu.:5.47  
##  degree_centrality_binarize  :  0           21018  : 14   Median :5.74  
##  degree_centrality_weighted  :  0           21024  : 14   Mean   :5.82  
##  reho                        :  0           1427581: 14   3rd Qu.:6.08  
##  sca_roi_PNAS_smith10_plus5_1:  0           1793622: 14   Max.   :8.59  
##  (Other)                     :  0           (Other):224                 
##      FWHMy          FWHMz     
##  Min.   :4.44   Min.   :4.66  
##  1st Qu.:5.15   1st Qu.:5.22  
##  Median :5.40   Median :5.48  
##  Mean   :5.47   Mean   :5.56  
##  3rd Qu.:5.70   3rd Qu.:5.79  
##  Max.   :8.51   Max.   :9.22  
## 

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                         derivative  session     subid         FWHMx      
##  reho                        :308   1:154   21002  : 14   Min.   : 7.84  
##  alff                        :  0   2:154   21006  : 14   1st Qu.: 9.81  
##  degree_centrality_binarize  :  0           21018  : 14   Median :10.62  
##  degree_centrality_weighted  :  0           21024  : 14   Mean   :10.74  
##  falff                       :  0           1427581: 14   3rd Qu.:11.47  
##  sca_roi_PNAS_smith10_plus5_1:  0           1793622: 14   Max.   :18.37  
##  (Other)                     :  0           (Other):224                  
##      FWHMy           FWHMz      
##  Min.   : 6.58   Min.   : 6.32  
##  1st Qu.: 8.21   1st Qu.: 7.48  
##  Median : 8.84   Median : 7.90  
##  Mean   : 8.90   Mean   : 8.22  
##  3rd Qu.: 9.49   3rd Qu.: 8.57  
##  Max.   :12.80   Max.   :14.20  
## 

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                       derivative  session     subid         FWHMx      
##  vmhc                      :308   1:154   21002  : 14   Min.   : 0.00  
##  alff                      :  0   2:154   21006  : 14   1st Qu.: 6.96  
##  degree_centrality_binarize:  0           21018  : 14   Median : 7.26  
##  degree_centrality_weighted:  0           21024  : 14   Mean   : 7.39  
##  falff                     :  0           1427581: 14   3rd Qu.: 7.63  
##  reho                      :  0           1793622: 14   Max.   :16.03  
##  (Other)                   :  0           (Other):224                  
##      FWHMy          FWHMz     
##  Min.   :5.71   Min.   :5.80  
##  1st Qu.:6.43   1st Qu.:6.42  
##  Median :6.63   Median :6.68  
##  Mean   :6.64   Mean   :6.69  
##  3rd Qu.:6.86   3rd Qu.:6.93  
##  Max.   :7.76   Max.   :8.06  
## 

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                                                   derivative  session
##  spatial_regression_spatial_map_PNAS_Smith09_rsn10_0000:308   1:154  
##  alff                                                  :  0   2:154  
##  degree_centrality_binarize                            :  0          
##  degree_centrality_weighted                            :  0          
##  falff                                                 :  0          
##  reho                                                  :  0          
##  (Other)                                               :  0          
##      subid         FWHMx          FWHMy          FWHMz      
##  21002  : 14   Min.   :5.03   Min.   :4.87   Min.   : 4.83  
##  21006  : 14   1st Qu.:6.06   1st Qu.:5.93   1st Qu.: 5.99  
##  21018  : 14   Median :6.29   Median :6.18   Median : 6.26  
##  21024  : 14   Mean   :6.33   Mean   :6.24   Mean   : 6.32  
##  1427581: 14   3rd Qu.:6.62   3rd Qu.:6.49   3rd Qu.: 6.59  
##  1793622: 14   Max.   :8.03   Max.   :8.84   Max.   :11.16  
##  (Other):224

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                                                   derivative  session
##  spatial_regression_spatial_map_PNAS_Smith09_rsn10_0001:308   1:154  
##  alff                                                  :  0   2:154  
##  degree_centrality_binarize                            :  0          
##  degree_centrality_weighted                            :  0          
##  falff                                                 :  0          
##  reho                                                  :  0          
##  (Other)                                               :  0          
##      subid         FWHMx          FWHMy           FWHMz      
##  21002  : 14   Min.   :5.49   Min.   : 6.04   Min.   : 0.00  
##  21006  : 14   1st Qu.:6.42   1st Qu.: 6.69   1st Qu.: 6.62  
##  21018  : 14   Median :6.80   Median : 6.98   Median : 7.04  
##  21024  : 14   Mean   :6.88   Mean   : 7.12   Mean   : 7.26  
##  1427581: 14   3rd Qu.:7.17   3rd Qu.: 7.36   3rd Qu.: 7.52  
##  1793622: 14   Max.   :9.78   Max.   :11.01   Max.   :48.62  
##  (Other):224

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                                                   derivative  session
##  spatial_regression_spatial_map_PNAS_Smith09_rsn10_0002:308   1:154  
##  alff                                                  :  0   2:154  
##  degree_centrality_binarize                            :  0          
##  degree_centrality_weighted                            :  0          
##  falff                                                 :  0          
##  reho                                                  :  0          
##  (Other)                                               :  0          
##      subid         FWHMx           FWHMy          FWHMz      
##  21002  : 14   Min.   : 5.72   Min.   :5.34   Min.   : 0.00  
##  21006  : 14   1st Qu.: 6.34   1st Qu.:6.33   1st Qu.: 6.26  
##  21018  : 14   Median : 6.64   Median :6.62   Median : 6.59  
##  21024  : 14   Mean   : 6.75   Mean   :6.70   Mean   : 6.67  
##  1427581: 14   3rd Qu.: 7.00   3rd Qu.:6.93   3rd Qu.: 6.94  
##  1793622: 14   Max.   :10.30   Max.   :9.77   Max.   :18.94  
##  (Other):224

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                                                   derivative  session
##  spatial_regression_spatial_map_PNAS_Smith09_rsn10_0003:308   1:154  
##  alff                                                  :  0   2:154  
##  degree_centrality_binarize                            :  0          
##  degree_centrality_weighted                            :  0          
##  falff                                                 :  0          
##  reho                                                  :  0          
##  (Other)                                               :  0          
##      subid         FWHMx          FWHMy          FWHMz      
##  21002  : 14   Min.   :5.84   Min.   :5.44   Min.   : 5.39  
##  21006  : 14   1st Qu.:6.39   1st Qu.:6.05   1st Qu.: 6.13  
##  21018  : 14   Median :6.62   Median :6.30   Median : 6.39  
##  21024  : 14   Mean   :6.67   Mean   :6.34   Mean   : 6.44  
##  1427581: 14   3rd Qu.:6.88   3rd Qu.:6.55   3rd Qu.: 6.62  
##  1793622: 14   Max.   :8.29   Max.   :8.58   Max.   :14.77  
##  (Other):224

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                                                   derivative  session
##  spatial_regression_spatial_map_PNAS_Smith09_rsn10_0004:308   1:154  
##  alff                                                  :  0   2:154  
##  degree_centrality_binarize                            :  0          
##  degree_centrality_weighted                            :  0          
##  falff                                                 :  0          
##  reho                                                  :  0          
##  (Other)                                               :  0          
##      subid         FWHMx           FWHMy           FWHMz      
##  21002  : 14   Min.   : 5.17   Min.   : 5.77   Min.   : 0.00  
##  21006  : 14   1st Qu.: 6.58   1st Qu.: 6.64   1st Qu.: 6.79  
##  21018  : 14   Median : 6.94   Median : 7.04   Median : 7.18  
##  21024  : 14   Mean   : 7.05   Mean   : 7.19   Mean   : 7.21  
##  1427581: 14   3rd Qu.: 7.39   3rd Qu.: 7.48   3rd Qu.: 7.65  
##  1793622: 14   Max.   :10.86   Max.   :13.96   Max.   :18.12  
##  (Other):224

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                                                   derivative  session
##  spatial_regression_spatial_map_PNAS_Smith09_rsn10_0005:308   1:154  
##  alff                                                  :  0   2:154  
##  degree_centrality_binarize                            :  0          
##  degree_centrality_weighted                            :  0          
##  falff                                                 :  0          
##  reho                                                  :  0          
##  (Other)                                               :  0          
##      subid         FWHMx          FWHMy           FWHMz      
##  21002  : 14   Min.   :5.40   Min.   : 5.41   Min.   : 0.00  
##  21006  : 14   1st Qu.:6.34   1st Qu.: 6.27   1st Qu.: 6.40  
##  21018  : 14   Median :6.58   Median : 6.59   Median : 6.66  
##  21024  : 14   Mean   :6.64   Mean   : 6.64   Mean   : 6.78  
##  1427581: 14   3rd Qu.:6.86   3rd Qu.: 6.87   3rd Qu.: 7.00  
##  1793622: 14   Max.   :8.98   Max.   :10.09   Max.   :27.31  
##  (Other):224

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                                                   derivative  session
##  spatial_regression_spatial_map_PNAS_Smith09_rsn10_0006:308   1:154  
##  alff                                                  :  0   2:154  
##  degree_centrality_binarize                            :  0          
##  degree_centrality_weighted                            :  0          
##  falff                                                 :  0          
##  reho                                                  :  0          
##  (Other)                                               :  0          
##      subid         FWHMx          FWHMy          FWHMz      
##  21002  : 14   Min.   :5.78   Min.   :5.58   Min.   : 0.00  
##  21006  : 14   1st Qu.:6.53   1st Qu.:6.33   1st Qu.: 6.61  
##  21018  : 14   Median :6.80   Median :6.59   Median : 6.92  
##  21024  : 14   Mean   :6.85   Mean   :6.64   Mean   : 7.04  
##  1427581: 14   3rd Qu.:7.12   3rd Qu.:6.91   3rd Qu.: 7.28  
##  1793622: 14   Max.   :8.99   Max.   :8.92   Max.   :17.57  
##  (Other):224

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                                                   derivative  session
##  spatial_regression_spatial_map_PNAS_Smith09_rsn10_0007:308   1:154  
##  alff                                                  :  0   2:154  
##  degree_centrality_binarize                            :  0          
##  degree_centrality_weighted                            :  0          
##  falff                                                 :  0          
##  reho                                                  :  0          
##  (Other)                                               :  0          
##      subid         FWHMx           FWHMy           FWHMz      
##  21002  : 14   Min.   : 5.67   Min.   : 5.79   Min.   : 0.00  
##  21006  : 14   1st Qu.: 6.62   1st Qu.: 6.60   1st Qu.: 6.72  
##  21018  : 14   Median : 6.96   Median : 6.84   Median : 7.02  
##  21024  : 14   Mean   : 7.03   Mean   : 6.95   Mean   : 7.09  
##  1427581: 14   3rd Qu.: 7.34   3rd Qu.: 7.18   3rd Qu.: 7.34  
##  1793622: 14   Max.   :10.23   Max.   :10.64   Max.   :13.55  
##  (Other):224

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                                                   derivative  session
##  spatial_regression_spatial_map_PNAS_Smith09_rsn10_0008:308   1:154  
##  alff                                                  :  0   2:154  
##  degree_centrality_binarize                            :  0          
##  degree_centrality_weighted                            :  0          
##  falff                                                 :  0          
##  reho                                                  :  0          
##  (Other)                                               :  0          
##      subid         FWHMx          FWHMy          FWHMz      
##  21002  : 14   Min.   :6.09   Min.   :5.91   Min.   : 0.00  
##  21006  : 14   1st Qu.:6.63   1st Qu.:6.39   1st Qu.: 6.51  
##  21018  : 14   Median :6.94   Median :6.70   Median : 6.81  
##  21024  : 14   Mean   :6.98   Mean   :6.74   Mean   : 6.92  
##  1427581: 14   3rd Qu.:7.22   3rd Qu.:6.97   3rd Qu.: 7.19  
##  1793622: 14   Max.   :9.00   Max.   :8.50   Max.   :23.52  
##  (Other):224

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##                    pipeline                      scan   
##  pipeline_NewStrawn    :308   mx_1400_First5Min    :44  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :44  
##                               mx_1400_First5MinDSNF:44  
##                               mx_645_First5Min     :44  
##                               mx_645_First5MinDS   :44  
##                               mx_645_First5MinDSNF :44  
##                               (Other)              :44  
##                                                   derivative  session
##  spatial_regression_spatial_map_PNAS_Smith09_rsn10_0009:308   1:154  
##  alff                                                  :  0   2:154  
##  degree_centrality_binarize                            :  0          
##  degree_centrality_weighted                            :  0          
##  falff                                                 :  0          
##  reho                                                  :  0          
##  (Other)                                               :  0          
##      subid         FWHMx          FWHMy          FWHMz      
##  21002  : 14   Min.   :5.78   Min.   :5.88   Min.   : 0.00  
##  21006  : 14   1st Qu.:6.62   1st Qu.:6.37   1st Qu.: 6.52  
##  21018  : 14   Median :6.84   Median :6.63   Median : 6.79  
##  21024  : 14   Mean   :6.91   Mean   :6.71   Mean   : 6.87  
##  1427581: 14   3rd Qu.:7.14   3rd Qu.:6.96   3rd Qu.: 7.11  
##  1793622: 14   Max.   :8.65   Max.   :8.90   Max.   :28.02  
##  (Other):224

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Scatter Plots

showing correlations of mean smoothness with the number of voxels with ICC > 0.5, for each statistics.

##                    pipeline                      scan   
##  pipeline_NewStrawn    :224   mx_1400_First5Min    :32  
##  pipeline_WoodworthTown:  0   mx_1400_First5MinDS  :32  
##                               mx_1400_First5MinDSNF:32  
##                               mx_645_First5Min     :32  
##                               mx_645_First5MinDS   :32  
##                               mx_645_First5MinDSNF :32  
##                               (Other)              :32  
##                       derivative  session     FWHMx          FWHMy     
##  alff                      : 14   1:112   Min.   :5.41   Min.   :5.27  
##  degree_centrality_binarize: 14   2:112   1st Qu.:6.12   1st Qu.:5.97  
##  degree_centrality_weighted: 14           Median :6.32   Median :6.23  
##  falff                     : 14           Mean   :6.65   Mean   :6.48  
##  reho                      : 14           3rd Qu.:6.51   3rd Qu.:6.47  
##  spatial_regression_0000   : 14           Max.   :9.56   Max.   :8.99  
##  (Other)                   :140                                        
##      FWHMz           nVox            FWHMm     
##  Min.   :5.21   Min.   :  4313   Min.   :5.29  
##  1st Qu.:5.93   1st Qu.: 10458   1st Qu.:6.04  
##  Median :6.20   Median : 14062   Median :6.25  
##  Mean   :6.44   Mean   : 33233   Mean   :6.52  
##  3rd Qu.:6.46   3rd Qu.: 28317   3rd Qu.:6.46  
##  Max.   :9.24   Max.   :143992   Max.   :9.26  
## 

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Links