Volcano plot Online Presentation

Jiacheng Lou
2020-01-29

Idea

The main idea of the application is to provide usefule interface for Volcano plot. It could be use for drawing your favorite Volcano plot.

Main screenshot

Tools Detail

Tools Parameters

  • Cutoff of Foldchange - Change Vertical dotted line
  • Cutoff of Padj - Change horizontal dotted line
  • Input Number of Xlim - X axle max range
  • Input Number of Ylim - Y axle max range
  • Select Color panel - Change Plot color panel

Input Data Example

Vol.data<-read.csv("VolResult-3.csv",header = T)
head(Vol.data)

    SYMBOL Log2FoldChange          Padj change
1   TSPAN6      1.1052267  2.797427e-22     UP
2     TNMD     -1.4301085  1.559277e-04   DOWN
3     DPM1      0.7473072  9.830127e-19    NOT
4    SCYL3      0.1830004  1.102911e-02    NOT
5 C1orf112      2.2293923 5.122814e-117     UP
6      FGR     -2.4433779  3.835902e-54   DOWN

Summary

Volcano plot Online could be find by link:: https://chrislifescience.shinyapps.io/Assignment/