## A MultiAssayExperiment object of 2 listed
## experiments with user-defined names and respective classes.
## Containing an ExperimentList class object of length 2:
## [1] DNA methylation: RangedSummarizedExperiment with 396065 rows and 171 columns
## [2] Gene expression: RangedSummarizedExperiment with 56512 rows and 171 columns
## Features:
## experiments() - obtain the ExperimentList instance
## colData() - the primary/phenotype DFrame
## sampleMap() - the sample availability DFrame
## `$`, `[`, `[[` - extract colData columns, subset, or experiment
## *Format() - convert into a long or wide DFrame
## assays() - convert ExperimentList to a SimpleList of matrices## ExperimentList class object of length 2:
## [1] DNA methylation: RangedSummarizedExperiment with 396065 rows and 171 columns
## [2] Gene expression: RangedSummarizedExperiment with 56512 rows and 171 columns## A MultiAssayExperiment object of 2 listed
## experiments with user-defined names and respective classes.
## Containing an ExperimentList class object of length 2:
## [1] DNA methylation: RangedSummarizedExperiment with 131435 rows and 171 columns
## [2] Gene expression: RangedSummarizedExperiment with 56512 rows and 171 columns
## Features:
## experiments() - obtain the ExperimentList instance
## colData() - the primary/phenotype DFrame
## sampleMap() - the sample availability DFrame
## `$`, `[`, `[[` - extract colData columns, subset, or experiment
## *Format() - convert into a long or wide DFrame
## assays() - convert ExperimentList to a SimpleList of matrices## ExperimentList class object of length 2:
## [1] DNA methylation: RangedSummarizedExperiment with 131435 rows and 171 columns
## [2] Gene expression: RangedSummarizedExperiment with 56512 rows and 171 columns## ─ Session info ───────────────────────────────────────────────────────────────
## setting value
## version R version 3.6.1 (2019-07-05)
## os Ubuntu 19.10
## system x86_64, linux-gnu
## ui X11
## language (EN)
## collate en_US.UTF-8
## ctype en_US.UTF-8
## tz America/New_York
## date 2019-12-23
##
## ─ Packages ───────────────────────────────────────────────────────────────────
## package * version date lib source
## assertthat 0.2.1 2019-03-21 [2] CRAN (R 3.6.1)
## backports 1.1.5 2019-10-02 [2] CRAN (R 3.6.1)
## Biobase * 2.46.0 2019-10-29 [1] Bioconductor
## BiocGenerics * 0.32.0 2019-10-29 [1] Bioconductor
## BiocParallel * 1.20.0 2019-10-30 [1] Bioconductor
## bitops 1.0-6 2013-08-17 [2] CRAN (R 3.6.1)
## callr 3.4.0 2019-12-09 [2] CRAN (R 3.6.1)
## cli 2.0.0 2019-12-09 [2] CRAN (R 3.6.1)
## crayon 1.3.4 2017-09-16 [2] CRAN (R 3.6.1)
## DelayedArray * 0.12.0 2019-10-29 [1] Bioconductor
## desc 1.2.0 2018-05-01 [2] CRAN (R 3.6.1)
## devtools 2.2.1 2019-09-24 [2] CRAN (R 3.6.1)
## digest 0.6.22 2019-10-21 [1] CRAN (R 3.6.1)
## ellipsis 0.3.0 2019-09-20 [2] CRAN (R 3.6.1)
## evaluate 0.14 2019-05-28 [2] CRAN (R 3.6.1)
## fansi 0.4.0 2018-10-05 [2] CRAN (R 3.6.1)
## fs 1.3.1 2019-05-06 [2] CRAN (R 3.6.1)
## GenomeInfoDb * 1.22.0 2019-10-29 [1] Bioconductor
## GenomeInfoDbData 1.2.2 2019-11-06 [1] Bioconductor
## GenomicRanges * 1.38.0 2019-10-29 [1] Bioconductor
## glue 1.3.1 2019-03-12 [2] CRAN (R 3.6.1)
## htmltools 0.4.0 2019-10-04 [2] CRAN (R 3.6.1)
## IRanges * 2.20.0 2019-10-29 [1] Bioconductor
## jsonlite 1.6 2018-12-07 [2] CRAN (R 3.6.1)
## knitr 1.26 2019-11-12 [2] CRAN (R 3.6.1)
## lattice 0.20-38 2018-11-04 [4] CRAN (R 3.6.0)
## magrittr 1.5 2014-11-22 [2] CRAN (R 3.6.1)
## Matrix 1.2-18 2019-11-27 [2] CRAN (R 3.6.1)
## matrixStats * 0.55.0 2019-09-07 [2] CRAN (R 3.6.1)
## memoise 1.1.0 2017-04-21 [2] CRAN (R 3.6.1)
## MultiAssayExperiment * 1.12.0 2019-10-29 [1] Bioconductor
## pkgbuild 1.0.6 2019-10-09 [2] CRAN (R 3.6.1)
## pkgload 1.0.2 2018-10-29 [2] CRAN (R 3.6.1)
## plyr 1.8.5 2019-12-10 [2] CRAN (R 3.6.1)
## prettyunits 1.0.2 2015-07-13 [2] CRAN (R 3.6.1)
## processx 3.4.1 2019-07-18 [2] CRAN (R 3.6.1)
## ps 1.3.0 2018-12-21 [2] CRAN (R 3.6.1)
## R6 2.4.1 2019-11-12 [2] CRAN (R 3.6.1)
## Rcpp 1.0.3 2019-11-08 [2] CRAN (R 3.6.1)
## RCurl 1.95-4.12 2019-03-04 [2] CRAN (R 3.6.1)
## remotes 2.1.0 2019-06-24 [2] CRAN (R 3.6.1)
## rlang 0.4.2 2019-11-23 [2] CRAN (R 3.6.1)
## rmarkdown 1.16 2019-10-01 [1] CRAN (R 3.6.1)
## rprojroot 1.3-2 2018-01-03 [2] CRAN (R 3.6.1)
## S4Vectors * 0.24.0 2019-10-29 [1] Bioconductor
## sessioninfo 1.1.1 2018-11-05 [2] CRAN (R 3.6.1)
## stringi 1.4.3 2019-03-12 [2] CRAN (R 3.6.1)
## stringr 1.4.0 2019-02-10 [2] CRAN (R 3.6.1)
## SummarizedExperiment * 1.16.0 2019-10-29 [1] Bioconductor
## testthat 2.3.1 2019-12-01 [2] CRAN (R 3.6.1)
## usethis 1.5.1 2019-07-04 [2] CRAN (R 3.6.1)
## withr 2.1.2 2018-03-15 [2] CRAN (R 3.6.1)
## xfun 0.10 2019-10-01 [1] CRAN (R 3.6.1)
## XVector 0.26.0 2019-10-29 [1] Bioconductor
## yaml 2.2.0 2018-07-25 [2] CRAN (R 3.6.1)
## zlibbioc 1.32.0 2019-10-29 [1] Bioconductor
##
## [1] /home/tiagochst/R/x86_64-pc-linux-gnu-library/3.6
## [2] /usr/local/lib/R/site-library
## [3] /usr/lib/R/site-library
## [4] /usr/lib/R/library