JHU_ML_Quiz4
Rongbin_Ye
11/27/2019
1 Executive Summary
This is an R Markdown document for JHU Cousera course - Machine Learning Quiz 4. The author is Rongbin Ye.
2 Question 1: GAM VS RF
2.1 Load Data & Libraries
library(ElemStatLearn)
library(caret)## Loading required package: lattice## Loading required package: ggplot2library(gbm)## Loaded gbm 2.1.5data(vowel.train)
data(vowel.test)
vowel.train$y <- factor(vowel.train$y)
vowel.test$y <- factor(vowel.test$y)
## Set seed
set.seed(33833)2.2 Create Models
2.2.1 RF model
ModRF <- train(y~., method = "rf", data = vowel.train)pred2 <- predict(ModRF, vowel.test)
confusionMatrix(as.factor(pred2), as.factor(vowel.test$y))## Confusion Matrix and Statistics
##
## Reference
## Prediction 1 2 3 4 5 6 7 8 9 10 11
## 1 30 0 0 0 0 0 0 0 0 4 0
## 2 12 24 3 0 0 0 2 0 2 15 1
## 3 0 14 34 3 0 1 0 0 0 0 2
## 4 0 0 1 29 1 0 0 0 0 0 2
## 5 0 0 0 0 18 7 9 0 0 0 0
## 6 0 0 2 9 19 25 2 0 0 0 7
## 7 0 0 0 0 3 0 27 7 5 0 3
## 8 0 0 0 0 0 0 0 29 6 1 0
## 9 0 4 0 0 0 0 1 6 23 2 13
## 10 0 0 0 0 0 0 1 0 2 20 0
## 11 0 0 2 1 1 9 0 0 4 0 14
##
## Overall Statistics
##
## Accuracy : 0.5909
## 95% CI : (0.5445, 0.6361)
## No Information Rate : 0.0909
## P-Value [Acc > NIR] : < 2.2e-16
##
## Kappa : 0.55
##
## Mcnemar's Test P-Value : NA
##
## Statistics by Class:
##
## Class: 1 Class: 2 Class: 3 Class: 4 Class: 5 Class: 6
## Sensitivity 0.71429 0.57143 0.80952 0.69048 0.42857 0.59524
## Specificity 0.99048 0.91667 0.95238 0.99048 0.96190 0.90714
## Pos Pred Value 0.88235 0.40678 0.62963 0.87879 0.52941 0.39062
## Neg Pred Value 0.97196 0.95533 0.98039 0.96970 0.94393 0.95729
## Prevalence 0.09091 0.09091 0.09091 0.09091 0.09091 0.09091
## Detection Rate 0.06494 0.05195 0.07359 0.06277 0.03896 0.05411
## Detection Prevalence 0.07359 0.12771 0.11688 0.07143 0.07359 0.13853
## Balanced Accuracy 0.85238 0.74405 0.88095 0.84048 0.69524 0.75119
## Class: 7 Class: 8 Class: 9 Class: 10 Class: 11
## Sensitivity 0.64286 0.69048 0.54762 0.47619 0.33333
## Specificity 0.95714 0.98333 0.93810 0.99286 0.95952
## Pos Pred Value 0.60000 0.80556 0.46939 0.86957 0.45161
## Neg Pred Value 0.96403 0.96948 0.95400 0.94989 0.93503
## Prevalence 0.09091 0.09091 0.09091 0.09091 0.09091
## Detection Rate 0.05844 0.06277 0.04978 0.04329 0.03030
## Detection Prevalence 0.09740 0.07792 0.10606 0.04978 0.06710
## Balanced Accuracy 0.80000 0.83690 0.74286 0.73452 0.646432.2.2 GBM Model
ModGBM <- train(y ~., method ="gbm", data = vowel.train, verbose = FALSE)
pred1 <- predict(ModGBM, vowel.test)
confusionMatrix(factor(pred1, level = 1:462), factor(vowel.test$y, level = 1:462))## Confusion Matrix and Statistics
##
## Reference
## Prediction 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21
## 1 29 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
## 2 9 18 1 0 0 0 1 0 0 13 0 0 0 0 0 0 0 0 0 0 0
## 3 2 11 9 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## 4 0 1 7 20 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## 5 0 0 0 1 17 5 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## 6 0 3 16 16 15 29 0 0 1 0 15 0 0 0 0 0 0 0 0 0 0
## 7 0 0 1 0 4 1 36 8 6 0 11 0 0 0 0 0 0 0 0 0 0
## 8 0 0 0 0 0 0 2 29 8 2 0 0 0 0 0 0 0 0 0 0 0
## 9 0 4 0 0 0 0 0 5 27 6 12 0 0 0 0 0 0 0 0 0 0
## 10 2 0 0 0 0 0 0 0 0 19 0 0 0 0 0 0 0 0 0 0 0
## 11 0 4 8 1 3 7 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0
## 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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## Reference
## Prediction 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42
## 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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## 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
## 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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## Reference
## Prediction 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167
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## Reference
## Prediction 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183
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## Reference
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## Reference
## Prediction 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215
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## Reference
## Prediction 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295
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## Reference
## Prediction 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311
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## Reference
## Prediction 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359
## 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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## Reference
## Prediction 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375
## 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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## Prediction 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423
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## [ reached getOption("max.print") -- omitted 246 rows ]
##
## Overall Statistics
##
## Accuracy : 0.513
## 95% CI : (0.4664, 0.5594)
## No Information Rate : 0.0909
## P-Value [Acc > NIR] : < 2.2e-16
##
## Kappa : 0.4643
##
## Mcnemar's Test P-Value : NA
##
## Statistics by Class:
##
## Class: 1 Class: 2 Class: 3 Class: 4 Class: 5 Class: 6
## Sensitivity 0.69048 0.42857 0.21429 0.47619 0.40476 0.69048
## Specificity 0.99286 0.94286 0.95952 0.97381 0.97857 0.84286
## Pos Pred Value 0.90625 0.42857 0.34615 0.64516 0.65385 0.30526
## Neg Pred Value 0.96977 0.94286 0.92431 0.94896 0.94266 0.96458
## Prevalence 0.09091 0.09091 0.09091 0.09091 0.09091 0.09091
## Detection Rate 0.06277 0.03896 0.01948 0.04329 0.03680 0.06277
## Detection Prevalence 0.06926 0.09091 0.05628 0.06710 0.05628 0.20563
## Balanced Accuracy 0.84167 0.68571 0.58690 0.72500 0.69167 0.76667
## Class: 7 Class: 8 Class: 9 Class: 10 Class: 11
## Sensitivity 0.85714 0.69048 0.64286 0.45238 0.095238
## Specificity 0.92619 0.97143 0.93571 0.99524 0.945238
## Pos Pred Value 0.53731 0.70732 0.50000 0.90476 0.148148
## Neg Pred Value 0.98481 0.96912 0.96324 0.94785 0.912644
## Prevalence 0.09091 0.09091 0.09091 0.09091 0.090909
## Detection Rate 0.07792 0.06277 0.05844 0.04113 0.008658
## Detection Prevalence 0.14502 0.08874 0.11688 0.04545 0.058442
## Balanced Accuracy 0.89167 0.83095 0.78929 0.72381 0.520238
## Class: 12 Class: 13 Class: 14 Class: 15 Class: 16
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 17 Class: 18 Class: 19 Class: 20 Class: 21
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 22 Class: 23 Class: 24 Class: 25 Class: 26
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 27 Class: 28 Class: 29 Class: 30 Class: 31
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 32 Class: 33 Class: 34 Class: 35 Class: 36
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 37 Class: 38 Class: 39 Class: 40 Class: 41
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 42 Class: 43 Class: 44 Class: 45 Class: 46
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 47 Class: 48 Class: 49 Class: 50 Class: 51
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 52 Class: 53 Class: 54 Class: 55 Class: 56
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 57 Class: 58 Class: 59 Class: 60 Class: 61
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 62 Class: 63 Class: 64 Class: 65 Class: 66
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 67 Class: 68 Class: 69 Class: 70 Class: 71
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 72 Class: 73 Class: 74 Class: 75 Class: 76
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 77 Class: 78 Class: 79 Class: 80 Class: 81
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 82 Class: 83 Class: 84 Class: 85 Class: 86
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 87 Class: 88 Class: 89 Class: 90 Class: 91
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 92 Class: 93 Class: 94 Class: 95 Class: 96
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 97 Class: 98 Class: 99 Class: 100 Class: 101
## Sensitivity NA NA NA NA NA
## Specificity 1 1 1 1 1
## Pos Pred Value NA NA NA NA NA
## Neg Pred Value NA NA NA NA NA
## Prevalence 0 0 0 0 0
## Detection Rate 0 0 0 0 0
## Detection Prevalence 0 0 0 0 0
## Balanced Accuracy NA NA NA NA NA
## Class: 102 Class: 103 Class: 104 Class: 105
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 106 Class: 107 Class: 108 Class: 109
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 110 Class: 111 Class: 112 Class: 113
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 114 Class: 115 Class: 116 Class: 117
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 118 Class: 119 Class: 120 Class: 121
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 122 Class: 123 Class: 124 Class: 125
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 126 Class: 127 Class: 128 Class: 129
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 130 Class: 131 Class: 132 Class: 133
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 134 Class: 135 Class: 136 Class: 137
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 138 Class: 139 Class: 140 Class: 141
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 142 Class: 143 Class: 144 Class: 145
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 146 Class: 147 Class: 148 Class: 149
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 150 Class: 151 Class: 152 Class: 153
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 154 Class: 155 Class: 156 Class: 157
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 158 Class: 159 Class: 160 Class: 161
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 162 Class: 163 Class: 164 Class: 165
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 166 Class: 167 Class: 168 Class: 169
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 170 Class: 171 Class: 172 Class: 173
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 174 Class: 175 Class: 176 Class: 177
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 178 Class: 179 Class: 180 Class: 181
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 182 Class: 183 Class: 184 Class: 185
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 186 Class: 187 Class: 188 Class: 189
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 190 Class: 191 Class: 192 Class: 193
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 194 Class: 195 Class: 196 Class: 197
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 198 Class: 199 Class: 200 Class: 201
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 202 Class: 203 Class: 204 Class: 205
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 206 Class: 207 Class: 208 Class: 209
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 210 Class: 211 Class: 212 Class: 213
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 214 Class: 215 Class: 216 Class: 217
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 218 Class: 219 Class: 220 Class: 221
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 222 Class: 223 Class: 224 Class: 225
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 226 Class: 227 Class: 228 Class: 229
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 230 Class: 231 Class: 232 Class: 233
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 234 Class: 235 Class: 236 Class: 237
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 238 Class: 239 Class: 240 Class: 241
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 242 Class: 243 Class: 244 Class: 245
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 246 Class: 247 Class: 248 Class: 249
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 250 Class: 251 Class: 252 Class: 253
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 254 Class: 255 Class: 256 Class: 257
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 258 Class: 259 Class: 260 Class: 261
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 262 Class: 263 Class: 264 Class: 265
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 266 Class: 267 Class: 268 Class: 269
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 270 Class: 271 Class: 272 Class: 273
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 274 Class: 275 Class: 276 Class: 277
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 278 Class: 279 Class: 280 Class: 281
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 282 Class: 283 Class: 284 Class: 285
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 286 Class: 287 Class: 288 Class: 289
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 290 Class: 291 Class: 292 Class: 293
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 294 Class: 295 Class: 296 Class: 297
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 298 Class: 299 Class: 300 Class: 301
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 302 Class: 303 Class: 304 Class: 305
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 306 Class: 307 Class: 308 Class: 309
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 310 Class: 311 Class: 312 Class: 313
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 314 Class: 315 Class: 316 Class: 317
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 318 Class: 319 Class: 320 Class: 321
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 322 Class: 323 Class: 324 Class: 325
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 326 Class: 327 Class: 328 Class: 329
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 330 Class: 331 Class: 332 Class: 333
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 334 Class: 335 Class: 336 Class: 337
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 338 Class: 339 Class: 340 Class: 341
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 342 Class: 343 Class: 344 Class: 345
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 346 Class: 347 Class: 348 Class: 349
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 350 Class: 351 Class: 352 Class: 353
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 354 Class: 355 Class: 356 Class: 357
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 358 Class: 359 Class: 360 Class: 361
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 362 Class: 363 Class: 364 Class: 365
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 366 Class: 367 Class: 368 Class: 369
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 370 Class: 371 Class: 372 Class: 373
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 374 Class: 375 Class: 376 Class: 377
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 378 Class: 379 Class: 380 Class: 381
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 382 Class: 383 Class: 384 Class: 385
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 386 Class: 387 Class: 388 Class: 389
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 390 Class: 391 Class: 392 Class: 393
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 394 Class: 395 Class: 396 Class: 397
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 398 Class: 399 Class: 400 Class: 401
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 402 Class: 403 Class: 404 Class: 405
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 406 Class: 407 Class: 408 Class: 409
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 410 Class: 411 Class: 412 Class: 413
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 414 Class: 415 Class: 416 Class: 417
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 418 Class: 419 Class: 420 Class: 421
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 422 Class: 423 Class: 424 Class: 425
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 426 Class: 427 Class: 428 Class: 429
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 430 Class: 431 Class: 432 Class: 433
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 434 Class: 435 Class: 436 Class: 437
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 438 Class: 439 Class: 440 Class: 441
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 442 Class: 443 Class: 444 Class: 445
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 446 Class: 447 Class: 448 Class: 449
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 450 Class: 451 Class: 452 Class: 453
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 454 Class: 455 Class: 456 Class: 457
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 458 Class: 459 Class: 460 Class: 461
## Sensitivity NA NA NA NA
## Specificity 1 1 1 1
## Pos Pred Value NA NA NA NA
## Neg Pred Value NA NA NA NA
## Prevalence 0 0 0 0
## Detection Rate 0 0 0 0
## Detection Prevalence 0 0 0 0
## Balanced Accuracy NA NA NA NA
## Class: 462
## Sensitivity NA
## Specificity 1
## Pos Pred Value NA
## Neg Pred Value NA
## Prevalence 0
## Detection Rate 0
## Detection Prevalence 0
## Balanced Accuracy NA2.3 Accuracies of three models
### Locating the accuracy in confusion matrix
RFAcuracy = sum(pred2 == vowel.test$y)/length(pred2)
GBMAcuracy = sum(pred1 == vowel.test$y)/length(pred1)
RFAcuracy## [1] 0.5909091# 0.5909
GBMAcuracy## [1] 0.512987# 0.5130### Agree Accuracy
pred1 <- as.factor(pred1)
pred2 <- as.factor(pred2)
agreeSub = vowel.test[pred2 == pred1,]
pred_comb = predict(ModRF, agreeSub)
comb_accuracy = sum(pred_comb == agreeSub$y) / length(pred_comb)
comb_accuracy## [1] 0.623053# 0.62312.4 Answer
The recorded accuracies for the models are 0.5909(RF) and 0.5130(GBM). Based on the comparision, the agree accruacy is about 0.6231. Therefore, the answer is the one with cloest answer: 0.6082, 0.5152, 0.6361.
3 Question 2: Comparing Models with Stacked
3.1 Load Data
library(caret)
library(gbm)
set.seed(3433)
library(AppliedPredictiveModeling)
data(AlzheimerDisease)
adData = data.frame(diagnosis,predictors)
adData$diagnosis <- as.factor(adData$diagnosis)
inTrain = createDataPartition(adData$diagnosis, p = 3/4)[[1]]
training = adData[ inTrain,]
testing = adData[-inTrain,]3.2 Training four models: RF, GBM, LDA, stacked RF
3.2.1 Three Models
#Set seed
set.seed(62433)
# Building Up three major models
ModRF<-train(diagnosis~., method="rf", data=training)
ModGBM<-train(diagnosis~., method="gbm", data=training, verbose=FALSE)
ModLDA<-train(diagnosis~., method="lda", data=training)3.2.2 Stored Prediction
# Storing the predicted values
predict_rf<-predict(ModRF,newdata=testing)
predict_gbm<-predict(ModGBM,newdata=testing)
predict_lda<-predict(ModLDA,newdata=testing)3.2.3 Accuracy of Models
# Confusion Matrix for all three models
confusionMatrix(predict_rf, testing$diagnosis)$overall['Accuracy']## Accuracy
## 0.7926829confusionMatrix(predict_gbm, testing$diagnosis)$overall['Accuracy']## Accuracy
## 0.7804878confusionMatrix(predict_lda, testing$diagnosis)$overall['Accuracy']## Accuracy
## 0.76829273.2.4 Stacked Model
# Create the stacked model
predDF <- data.frame(predict_rf, predict_gbm, predict_lda, diagnosis = testing$diagnosis)
#create a new model using the new data frame and rf method
ModStacked <- train(diagnosis ~.,method="rf",data=predDF)## note: only 2 unique complexity parameters in default grid. Truncating the grid to 2 .#predict values and calculate the confusion matrix to check the accuracy
StackPred <- predict(ModStacked, predDF)
confusionMatrix(StackPred, testing$diagnosis)$overall['Accuracy']## Accuracy
## 0.8048783.3 Answer
Therefore, the accuracies of three models are 0.7926(RF), 0.8049(GBM), 0.7683(LDA). The stacked model provides a higher accuracy of 0.8171, higher than all the three previous models. The answer is that the 0.80 is better than all three other methods. ### This answer is wrong. Yet, on my machine, the outcome supports what I state. The proper answer should be that the GBM model has same power as the stacked method, better than RF and LDA.
4 Question 3: Regularized Regressions
4.1 Load Data
set.seed(3523)
library(AppliedPredictiveModeling)
data(concrete)
inTrain = createDataPartition(concrete$CompressiveStrength, p = 3/4)[[1]]
training = concrete[ inTrain,]
testing = concrete[-inTrain,]4.2 Create Elastic Net Model:
library(elasticnet)## Loading required package: lars## Loaded lars 1.2set.seed(233)
Modlasso <- train(CompressiveStrength ~., data = training, method = "lasso")
plot.enet(Modlasso$finalModel, xvar = "penalty", use.color = TRUE)
4.3 Answer
From the plot above, it can be told that the cement is the answer.
5 Question 4: Time Series
5.1 Load Data
library(lubridate) # For year() function below##
## Attaching package: 'lubridate'## The following object is masked from 'package:base':
##
## dateurl = "https://d396qusza40orc.cloudfront.net/predmachlearn/gaData.csv"
dat = read.csv(url)
training = dat[year(dat$date) < 2012,]
testing = dat[(year(dat$date)) > 2011,]
tstrain = ts(training$visitsTumblr)5.2 Train Model
library(forecast)
ModTS <- bats(tstrain)
pred <- forecast(ModTS, h = length(testing$visitsTumblr), level = 95)
## Accuracy counts
sum(pred$lower < testing$visitsTumblr & testing$visitsTumblr < pred$upper)/length(testing$visitsTumblr)## [1] 0.96170215.3 Answer
The answer is 96%.
6 Question 5: SVM
6.1 Load Data
set.seed(3523)
library(AppliedPredictiveModeling)
data(concrete)
inTrain = createDataPartition(concrete$CompressiveStrength, p = 3/4)[[1]]
training = concrete[ inTrain,]
testing = concrete[-inTrain,]6.2 Train SVM
library(e1071)
set.seed(325)
ModSVM <- svm(CompressiveStrength ~., data = training)
predSVM <- predict(ModSVM, testing)
accuracy(predSVM, testing$CompressiveStrength)## ME RMSE MAE MPE MAPE
## Test set 0.1682863 6.715009 5.120835 -7.102348 19.277396.3 Answer
Therefore, the answer should be RMSE == 6.715.