Title: Determining genome size categories for Schoenus RAD-seq analyses

Name: Tammy L. Elliott

Date: September 22, 2019

R version 3.5.1

Genome size categories

Maximum genome size

## [1] 10381

Minimum genome size

## [1] 233

Genome sizes between 100 and 2000 MBp

##  [1] aureus-336              aureus-337             
##  [3] Cap_brevicaulis-209     concinuus-AK308197     
##  [5] Cya_hexandra-MM6383     exilis-189             
##  [7] exilis-192              falcatus-B1754         
##  [9] fluitans-AK289622       kennyi-W10802          
## [11] maschalinus-AK283575    maschalinus-AK308198   
## [13] Nee_punctoria-MM6375    nigricans-230          
## [15] nigricans-Br2094        nitens-AK308188        
## [17] pedicellatus-B5424      rupicola-Br3339        
## [19] tendo-Mu545A            Tet_capillacea-327     
## [21] Tet_capillacea-MM6467   Tet_fasciata-305       
## [23] Tet_fasciata-313        Tet_fasciata-314       
## [25] Tet_fasciata-MM6478     Tet_flexuosa-JV91      
## [27] Tet_microstachys-MM6480 Tet_triangularis-JV103 
## [29] Tet_unknown-MM6446     
## 184 Levels: adnatus-DEB5531 albovaginatus-381 ... triticoides-281

Genome sizes between 2000 and 3000 MBp

##  [1] albovaginatus-381   albovaginatus-384   apogon-AK282169    
##  [4] apogon-AK308178     apogon-G100A        caespitans-AK288575
##  [7] compar-199          compar-232          compar-425         
## [10] filiculmis-IJ2888   megacarpus-227      pictus-386         
## [13] pseudoloreus-211    pseudoloreus-290    pseudoloreus-402   
## [16] pseudoloreus-424   
## 184 Levels: adnatus-DEB5531 albovaginatus-381 ... triticoides-281

Genome sizes between 3000 and 4000 MBp

##  [1] arenicola-269          arenicola-320          arenicola-MM6477      
##  [4] auritus-193            auritus-244            auritus-245           
##  [7] auritus-306            auritus-307            bolusii-308           
## [10] bolusii-309            bolusii-324            bolusii-329           
## [13] bolusii-cuspidatus-317 bracteosus-400         bracteosus-407        
## [16] brunnescens-221        brunnescens-322        brunnescens-377       
## [19] compactus-310          compactus-311          compactus-357         
## [22] comparoides-325        comparoides-333        crassus-321           
## [25] crassus-330            crassus-366            crassus-DEB5532       
## [28] cuspidatus-302         cuspidatus-303         cuspidatus-351        
## [31] cuspidatus-396         cuspidatus-397         cuspidatus-408        
## [34] cuspidatus-412         dregeanus-204          dregeanus-213         
## [37] dregeanus-383          dregeanus-410          Epischoenus-416       
## [40] Epischoenus_spnov-421  exilis-293             exilis-295            
## [43] exilis-385             exilis-415             gracillimus-388       
## [46] gracillimus-404        gracillimus-409        graminifolius-282     
## [49] graminifolius-283      ligulatus-DEB5530      limosus-241           
## [52] limosus-243            limosus-247            loreus-253            
## [55] loreus-262             pictus-202             pictus-203            
## [58] pictus-229             pictus-289             pictus-411            
## [61] pictus-418             prophyllus-394         prophyllus-395        
## [64] pseudoloreus-350       purpurascenus-349      spnov-long-370        
## [67] submarginalis-403      submarginalis-406      triticoides-279       
## [70] triticoides-281       
## 184 Levels: adnatus-DEB5531 albovaginatus-381 ... triticoides-281

Genome sizes between 4000 and 5000 MBp

## [1] Epischoenus-228      Epischoenus-405      Epischoenus-MM6385  
## [4] pauciflorus-AK308186 pauciflorus-AK308190 pseudoloreus-IJ2889b
## [7] purpurascenus-348    quadrangularis-356   quadrangularis-360  
## 184 Levels: adnatus-DEB5531 albovaginatus-381 ... triticoides-281

Genome sizes between 5000 and 6000 MBp

##  [1] adnatus-DEB5531        complanatus-339        complanatus-341       
##  [4] crassus-401            Epischoenus-258        Epischoenus-345       
##  [7] Epischoenus-346        Epischoenus-419        filiculmis-IJ2897     
## [10] graciliculmis-248      graciliculmis-255      gracillimus-206       
## [13] lucidus-359            neovillosus-207        quadrangularis-196    
## [16] quadrangularis-DEB5533 quartziticus-331       quartziticus-332      
## 184 Levels: adnatus-DEB5531 albovaginatus-381 ... triticoides-281

Genome sizes between 6000 and 7000 MBp

##  [1] auritus-cuspidatus-198 australis-265          australis-266         
##  [4] calceolus-392          calceolus-398          calceolus-399         
##  [7] crassiculmis-338       crassus-382            cuspidatus-191        
## [10] cuspidatus-256         cuspidatus-260         cuspidatus-363        
## [13] cuspidatus-423         cuspidatus-426         Epischoenus-417       
## [16] galpinii-235           galpinii-238           ligulatus-195         
## [19] ligulatus-231          ligulatus-358          submarginalis-334     
## 184 Levels: adnatus-DEB5531 albovaginatus-381 ... triticoides-281

Genome sizes between 7000 and 8000 MBp

##  [1] auritus-cuspidatus-197 australis-371          crassiculmis-420      
##  [4] cuspidatus-278         cuspidatus-284         cuspidatus-361        
##  [7] Epischoenus_spnov-287  Epischoenus_spnov-300  Epischoenus_spnov-301 
## [10] galpinii-239           submarginalis-335     
## 184 Levels: adnatus-DEB5531 albovaginatus-381 ... triticoides-281

Genome sizes between 8000 and 9000 MBp

## [1] submarginalis-182
## 184 Levels: adnatus-DEB5531 albovaginatus-381 ... triticoides-281

Genome sizes between 9000 and 10000 MBp

## [1] crassiculmis-298     crassus-312          crassus-354         
## [4] crassus-422          crassus-MM6468       pauciflorus-AK284668
## 184 Levels: adnatus-DEB5531 albovaginatus-381 ... triticoides-281

Genome sizes between 10000 and 11000 MBp

## [1] lucidus-342 lucidus-343 lucidus-414
## 184 Levels: adnatus-DEB5531 albovaginatus-381 ... triticoides-281

Genome sizes between 11000 and 12000 MBp

## factor(0)
## 184 Levels: adnatus-DEB5531 albovaginatus-381 ... triticoides-281