AV weekly meeting report 02 Analysis of NODDI data in CIFTI Space

meeting date: 2019-03-27
days until:
last run: 2019-03-26
link: http://rpubs.com/janderz8/479756

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Todo List

Lab Relevant

1. Pull together poster for Harvey Stancer Research Day
2. Update analyses in surface space (once CIFTIFY has finished running on remaining participants)
3. Grab estimates of cortical thickness & correlate w. ODI (differentiate by group)
4. Add the subcortical regions to the Glasser parcellations (important given the apparent role of the CN from GBSS) https://www.sciencedirect.com/science/article/pii/S1053811918319657?via%3Dihub
5. parcellate the TBSS data for NODDI outputs & focus on the Tracts that NEDA identified using the JHU atlas
   • Bilateral Uncinate Fasciculus
   • Bilateral Superior Longitudinal Fasciculus
   • Bilateral Cingulum Bundle (4 tracts inc. hippocampal portion)
   • Genu Corpus Callosum
   • Body Corpus Callosum
   • Splenium Corpus Callosum
   • Fornix
6. Run skull estimation on all subjects

Summary

Since our last meeting, I spent most of my time running analyses for & writing the abstract for the Harvey Stancer Research Day. I have also looked more at the surface based analyses (see below) which look promising & now correlate with the reserve factor I calculated.

Forays into suface space…

Now look at surface correlations with age and with reserve…

## Parsed with column specification:
## cols(
##   ODI = col_double(),
##   NDI = col_double(),
##   CSF = col_double(),
##   label = col_character()
## )

## Joining, by = "label"
## Joining, by = "label"

For Next Time:

Skull estimation!