2014-11-25
## Loading required package: splines
## Loading required package: RcmdrMisc
## Loading required package: car
## Loading required package: sandwich
## La interfaz R-Commander sólo funciona en sesiones interactivas
> library(agricolae, pos=14)
> Datos <- read.table("/home/arn/Escritorio/loyo", header=TRUE, sep="", na.strings="NA", dec=".", strip.white=TRUE)
> attach (Datos)
> model<-AMMI(ENV, GEN, REP, PESO, MSerror,PC=TRUE)
> plot (model)
> model$ANOVA
Analysis of Variance Table
Response: Y
Df Sum Sq Mean Sq F value Pr(>F)
ENV 2 135.634 67.817 267.8847 1.358e-06 ***
REP(ENV) 6 1.519 0.253 0.5110 0.8001
GEN 23 32.043 1.393 2.8121 2.180e-05 ***
ENV:GEN 28 34.287 1.225 2.4717 6.505e-05 ***
Residuals 426 211.049 0.495
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
> model$biplot
type PESO PC1 PC2
B GEN 1.996426 5.679314e-01 5.942555e-01
BxI GEN 1.438727 1.787223e-01 -3.599458e-01
BXI GEN 1.564546 -2.282909e-16 -1.956514e-15
BxJ GEN 1.829560 1.598584e-01 -3.219540e-01
BXJ GEN 1.741212 4.221909e-16 -3.809003e-16
BxN GEN 1.822616 -3.001433e-02 6.044871e-02
BXN GEN 2.365101 5.997119e-16 1.736832e-16
CRUISER GEN 1.377074 8.044291e-02 -1.032887e-03
ExK GEN 1.540977 9.587995e-02 -1.931017e-01
EXK GEN 1.812990 1.957523e-16 1.067265e-15
ExL GEN 1.466310 -3.049034e-02 6.140738e-02
EXL GEN 1.309546 2.055173e-16 -1.205421e-16
(ExL)(JxK) GEN 1.914315 4.731932e-01 -1.366217e-01
ExN GEN 1.832144 -5.076459e-02 1.022396e-01
EXN GEN 1.727768 3.799415e-16 1.949156e-16
I GEN 1.390481 -4.749669e-01 7.169106e-02
(I)(ExL) GEN 1.516907 -3.320450e-01 -9.132352e-02
(LxM)(B) GEN 1.593833 3.259407e-01 3.319274e-02
(N)(ExL) GEN 1.589241 8.689781e-02 -6.412711e-02
(UANMEL1) GEN 2.295889 -6.526505e-01 2.364286e-01
(UANMEL2) GEN 1.940778 -2.264527e-01 2.583209e-02
(UANMEL4) GEN 1.793141 -1.509692e-01 1.494492e-01
(UANMEL5) GEN 1.512222 -3.372395e-01 -1.597397e-01
(UANMEL7) GEN 1.768241 3.167264e-01 -7.098580e-03
BAJIO ENV 1.036399 1.306494e-01 -7.174632e-01
PARRAS ENV 1.818706 -1.003975e+00 2.838346e-01
TUNEL ENV 2.287401 8.733257e-01 4.336286e-01
> model$analysis
percent acum Df Sum.Sq Mean.Sq F.value Pr.F
PC1 83.9 83.9 24 9.587970 0.399499 0.81 0.725
PC2 16.1 100.0 22 1.840908 0.083678 0.17 1.000
> model$means
ENV GEN PESO RESIDUAL
1 BAJIO B 0.9665000 -3.521565e-01
2 BAJIO BxI 1.0425556 2.815978e-01
3 BAJIO BXI 0.8867763 1.394718e-15
4 BAJIO BxJ 1.4036667 2.518756e-01
5 BAJIO BXJ 1.0634430 3.330669e-16
6 BAJIO BxN 1.0975556 -4.729108e-02
7 BAJIO BXN 1.6873319 -1.873501e-16
8 BAJIO CRUISER 0.7105556 1.125088e-02
9 BAJIO ExK 1.0142778 1.510700e-01
10 BAJIO EXK 1.1352208 -7.355228e-16
11 BAJIO ExL 0.7405000 -4.804108e-02
12 BAJIO EXL 0.6317763 1.457168e-16
13 BAJIO (ExL)(JxK) 1.3963889 1.598435e-01
14 BAJIO ExN 1.0743889 -7.998552e-02
15 BAJIO EXN 1.0499985 -1.387779e-16
16 BAJIO I 0.5992222 -1.134899e-01
17 BAJIO (I)(ExL) 0.8612778 2.213977e-02
18 BAJIO (LxM)(B) 0.9348333 1.876940e-02
19 BAJIO (N)(ExL) 0.9688333 5.736199e-02
20 BAJIO (UANMEL1) 1.3632222 -2.548973e-01
21 BAJIO (UANMEL2) 1.2148889 -4.811949e-02
22 BAJIO (UANMEL4) 0.9884233 -1.269484e-01
23 BAJIO (UANMEL5) 0.9050000 7.054718e-02
24 BAJIO (UANMEL7) 1.1369444 4.647310e-02
25 PARRAS B 1.6994444 -4.015188e-01
26 PARRAS BxI 1.2616667 -2.815978e-01
27 PARRAS BXI 1.6690830 -3.053113e-16
28 PARRAS BxJ 1.6822222 -2.518756e-01
29 PARRAS BXJ 1.8457497 -5.273559e-16
30 PARRAS BxN 1.9744444 4.729108e-02
31 PARRAS BXN 2.4696386 -6.938894e-16
32 PARRAS CRUISER 1.4005556 -8.105585e-02
33 PARRAS ExK 1.4944444 -1.510700e-01
34 PARRAS EXK 1.9175275 1.110223e-16
35 PARRAS ExL 1.6188889 4.804108e-02
36 PARRAS EXL 1.4140830 -2.081668e-16
37 PARRAS (ExL)(JxK) 1.5050000 -5.138521e-01
38 PARRAS ExN 2.0166667 7.998552e-02
39 PARRAS EXN 1.8323053 -3.747003e-16
40 PARRAS I 1.9922222 4.972034e-01
41 PARRAS (I)(ExL) 1.9288889 3.074442e-01
42 PARRAS (LxM)(B) 1.3805556 -3.178151e-01
43 PARRAS (N)(ExL) 1.5883333 -1.054447e-01
44 PARRAS (UANMEL1) 3.1227778 7.223516e-01
45 PARRAS (UANMEL2) 2.2800000 2.346849e-01
46 PARRAS (UANMEL4) 2.0916667 1.939882e-01
47 PARRAS (UANMEL5) 1.9100000 2.932404e-01
48 PARRAS (UANMEL7) 1.5527778 -3.200003e-01
49 TUNEL B 3.3233333 7.536753e-01
50 TUNEL BxI 2.0119592 9.298118e-16
51 TUNEL BXI 2.1377778 -1.026956e-15
52 TUNEL BxJ 2.4027925 -9.645063e-16
53 TUNEL BXJ 2.3144444 2.081668e-16
54 TUNEL BxN 2.3958481 -1.110223e-16
55 TUNEL BXN 2.9383333 4.579670e-16
56 TUNEL CRUISER 2.0201111 6.980497e-02
57 TUNEL ExK 2.1142092 -1.526557e-16
58 TUNEL EXK 2.3862222 6.383782e-16
59 TUNEL ExL 2.0395425 -8.187895e-16
60 TUNEL EXL 1.8827778 1.595946e-16
61 TUNEL (ExL)(JxK) 2.8415556 3.540087e-01
62 TUNEL ExN 2.4053759 1.110223e-16
63 TUNEL EXN 2.3010000 3.677614e-16
64 TUNEL I 1.5800000 -3.837135e-01
65 TUNEL (I)(ExL) 1.7605556 -3.295839e-01
66 TUNEL (LxM)(B) 2.4661111 2.990457e-01
67 TUNEL (N)(ExL) 2.2105556 4.808275e-02
68 TUNEL (UANMEL1) 2.4016667 -4.674543e-01
69 TUNEL (UANMEL2) 2.3274444 -1.865654e-01
70 TUNEL (UANMEL4) 2.2993333 -6.703985e-02
71 TUNEL (UANMEL5) 1.7216667 -3.637876e-01
72 TUNEL (UANMEL7) 2.6150000 2.735272e-01