2014-11-25
## Loading required package: splines
## Loading required package: RcmdrMisc
## Loading required package: car
## Loading required package: sandwich
## La interfaz R-Commander sólo funciona en sesiones interactivas
> library(agricolae, pos=14)
> Datos <- read.table("/home/arn/Escritorio/loyo", header=TRUE, sep="", na.strings="NA", dec=".", strip.white=TRUE)
> attach (Datos)
> model<-AMMI(ENV, GEN, REP, DESFRUT, MSerror,PC=TRUE)
> plot (model)
> model$ANOVA
Analysis of Variance Table
Response: Y
Df Sum Sq Mean Sq F value Pr(>F)
ENV 2 84.08 42.042 32.6882 0.000594 ***
REP(ENV) 6 7.72 1.286 1.5108 0.172911
GEN 23 29.36 1.276 1.4993 0.065629 .
ENV:GEN 28 60.24 2.152 2.5274 4.22e-05 ***
Residuals 426 362.65 0.851
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
> model$biplot
type DESFRUT PC1 PC2
B GEN 3.240741 -1.217929e-02 1.511528e-01
BxI GEN 3.579733 3.523507e-01 -3.322908e-02
BXI GEN 3.701646 1.406084e-15 6.669810e-16
BxJ GEN 3.829733 4.803059e-01 -4.529613e-02
BXJ GEN 3.701646 -5.474914e-17 8.754590e-16
BxN GEN 3.593621 -4.431040e-02 4.178774e-03
BXN GEN 4.146091 -1.312237e-16 8.881105e-16
CRUISER GEN 3.574074 -3.761500e-01 5.482889e-02
ExK GEN 2.843621 2.883731e-01 -2.719556e-02
EXK GEN 3.229424 5.260121e-16 5.052070e-16
ExL GEN 3.288066 -6.329042e-01 5.968721e-02
EXL GEN 3.701646 2.480663e-16 7.544325e-16
(ExL)(JxK) GEN 3.583333 3.527199e-01 -2.479594e-02
ExN GEN 3.843621 3.907372e-01 -3.684920e-02
EXN GEN 3.368313 2.452518e-16 1.130013e-15
I GEN 3.351852 -7.401207e-01 -4.149498e-02
(I)(ExL) GEN 3.527778 -3.239977e-01 3.656452e-01
(LxM)(B) GEN 3.444444 1.792997e-01 4.161674e-01
(N)(ExL) GEN 3.666667 -1.391851e-01 1.849051e-01
(UANMEL1) GEN 3.972222 -5.596448e-03 -5.789238e-01
(UANMEL2) GEN 3.416667 -1.306826e-01 -2.078432e-01
(UANMEL4) GEN 3.387346 2.909294e-01 -3.601071e-01
(UANMEL5) GEN 3.388889 -3.382590e-01 -2.535917e-01
(UANMEL7) GEN 3.685185 4.086697e-01 3.727614e-01
BAJIO ENV 3.110018 1.040884e+00 -4.725530e-01
PARRAS ENV 3.458269 -1.121088e+00 -3.779035e-01
TUNEL ENV 4.065008 8.020387e-02 8.504564e-01
> model$analysis
percent acum Df Sum.Sq Mean.Sq F.value Pr.F
PC1 82.3 82.3 24 16.521176 0.688382 0.81 0.725
PC2 17.7 100.0 22 3.560334 0.161833 0.19 1.000
> model$means
ENV GEN DESFRUT RESIDUAL
1 BAJIO B 2.722222 -8.410492e-02
2 BAJIO BxI 3.527778 3.824589e-01
3 BAJIO BXI 3.267232 1.122366e-15
4 BAJIO BxJ 3.916667 5.213477e-01
5 BAJIO BXJ 3.267232 -4.597017e-16
6 BAJIO BxN 3.111111 -4.809670e-02
7 BAJIO BXN 3.711677 -6.956241e-16
8 BAJIO CRUISER 2.722222 -4.174383e-01
9 BAJIO ExK 2.722222 3.130144e-01
10 BAJIO EXK 2.795010 3.174544e-16
11 BAJIO ExL 2.166667 -6.869856e-01
12 BAJIO EXL 3.267232 -1.127570e-16
13 BAJIO (ExL)(JxK) 3.527778 3.788580e-01
14 BAJIO ExN 3.833333 4.241255e-01
15 BAJIO EXN 2.933899 -3.209238e-16
16 BAJIO I 2.166667 -7.507716e-01
17 BAJIO (I)(ExL) 2.583333 -5.100308e-01
18 BAJIO (LxM)(B) 3.000000 -1.003085e-02
19 BAJIO (N)(ExL) 3.000000 -2.322531e-01
20 BAJIO (UANMEL1) 3.805556 2.677469e-01
21 BAJIO (UANMEL2) 2.944444 -3.780863e-02
22 BAJIO (UANMEL4) 3.425926 4.729936e-01
23 BAJIO (UANMEL5) 2.722222 -2.322531e-01
24 BAJIO (UANMEL7) 3.500000 2.492284e-01
25 PARRAS B 3.111111 -4.346708e-02
26 PARRAS BxI 3.111111 -3.824589e-01
27 PARRAS BXI 3.615484 -1.854419e-15
28 PARRAS BxJ 3.222222 -5.213477e-01
29 PARRAS BXJ 3.615484 -2.584738e-16
30 PARRAS BxN 3.555556 4.809670e-02
31 PARRAS BXN 4.059928 -3.278627e-16
32 PARRAS CRUISER 3.888889 4.009774e-01
33 PARRAS ExK 2.444444 -3.130144e-01
34 PARRAS EXK 3.143261 -7.719519e-16
35 PARRAS ExL 3.888889 6.869856e-01
36 PARRAS EXL 3.615484 -5.776629e-16
37 PARRAS (ExL)(JxK) 3.111111 -3.860597e-01
38 PARRAS ExN 3.333333 -4.241255e-01
39 PARRAS EXN 3.282150 -7.441964e-16
40 PARRAS I 4.111111 8.454218e-01
41 PARRAS (I)(ExL) 3.666667 2.250514e-01
42 PARRAS (LxM)(B) 3.000000 -3.582819e-01
43 PARRAS (N)(ExL) 3.666667 8.616255e-02
44 PARRAS (UANMEL1) 4.111111 2.250514e-01
45 PARRAS (UANMEL2) 3.555556 2.250514e-01
46 PARRAS (UANMEL4) 3.111111 -1.900719e-01
47 PARRAS (UANMEL5) 3.777778 4.750514e-01
48 PARRAS (UANMEL7) 3.000000 -5.990226e-01
49 TUNEL B 3.888889 1.275720e-01
50 TUNEL BxI 4.100309 -1.323594e-15
51 TUNEL BXI 4.222222 6.539908e-16
52 TUNEL BxJ 4.350309 -1.039099e-15
53 TUNEL BXJ 4.222222 7.511353e-16
54 TUNEL BxN 4.114198 -1.184816e-15
55 TUNEL BXN 4.666667 6.054185e-16
56 TUNEL CRUISER 4.111111 1.646090e-02
57 TUNEL ExK 3.364198 -5.204170e-18
58 TUNEL EXK 3.750000 4.805184e-16
59 TUNEL ExL 3.808642 -7.060325e-16
60 TUNEL EXL 4.222222 6.470519e-16
61 TUNEL (ExL)(JxK) 4.111111 7.201636e-03
62 TUNEL ExN 4.364198 -7.129713e-16
63 TUNEL EXN 3.888889 9.384854e-16
64 TUNEL I 3.777778 -9.465022e-02
65 TUNEL (I)(ExL) 4.333333 2.849794e-01
66 TUNEL (LxM)(B) 4.333333 3.683127e-01
67 TUNEL (N)(ExL) 4.333333 1.460905e-01
68 TUNEL (UANMEL1) 4.000000 -4.927984e-01
69 TUNEL (UANMEL2) 3.750000 -1.872428e-01
70 TUNEL (UANMEL4) 3.625000 -2.829217e-01
71 TUNEL (UANMEL5) 3.666667 -2.427984e-01
72 TUNEL (UANMEL7) 4.555556 3.497942e-01