2014-11-25
## Loading required package: splines
## Loading required package: RcmdrMisc
## Loading required package: car
## Loading required package: sandwich
## La interfaz R-Commander sólo funciona en sesiones interactivas
> library(agricolae, pos=14)
> Datos <- read.table("/home/arn/Escritorio/loyo", header=TRUE, sep="", na.strings="NA", dec=".", strip.white=TRUE)
> attach (Datos)
> model<-AMMI(ENV, GEN, REP, FRUTAM, MSerror,PC=TRUE)
> plot (model)
> model$ANOVA
Analysis of Variance Table
Response: Y
Df Sum Sq Mean Sq F value Pr(>F)
ENV 2 13.090 6.5450 35.5824 0.0004701 ***
REP(ENV) 6 1.104 0.1839 0.5626 0.7600898
GEN 23 13.759 0.5982 1.8298 0.0115041 *
ENV:GEN 28 14.318 0.5114 1.5641 0.0352513 *
Residuals 426 139.271 0.3269
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
> model$biplot
type FRUTAM PC1 PC2
B GEN 1.092593 1.341293e-01 8.923654e-02
BxI GEN 1.406323 7.024354e-02 -8.061625e-02
BXI GEN 1.659575 3.469710e-16 -1.370425e-15
BxJ GEN 1.336879 1.118395e-01 -1.283545e-01
BXJ GEN 1.215131 -6.880051e-16 5.279718e-16
BxN GEN 1.447990 9.170204e-04 -1.052435e-03
BXN GEN 1.215131 -4.686043e-16 -4.347022e-16
CRUISER GEN 1.462963 -1.043200e-01 6.890276e-02
ExK GEN 1.517435 7.024354e-02 -8.061625e-02
EXK GEN 1.423464 -1.117338e-16 -7.960761e-16
ExL GEN 1.184101 7.024354e-02 -8.061625e-02
EXL GEN 1.215131 -3.516260e-16 -7.284567e-16
(ExL)(JxK) GEN 1.638889 3.902633e-01 3.415031e-02
ExN GEN 1.420212 -2.681359e-02 3.077309e-02
EXN GEN 1.659575 -3.625466e-16 -2.500393e-16
I GEN 1.759259 -3.497444e-01 4.240670e-01
(I)(ExL) GEN 1.712963 -1.670033e-01 -3.552732e-01
(LxM)(B) GEN 1.342593 -2.613213e-01 4.696690e-02
(N)(ExL) GEN 1.500000 2.922107e-01 -2.391856e-01
(UANMEL1) GEN 1.435185 -6.155077e-01 -1.712828e-01
(UANMEL2) GEN 1.370370 -1.699799e-03 -1.958683e-01
(UANMEL4) GEN 1.456570 -3.304540e-02 4.132201e-01
(UANMEL5) GEN 1.425926 3.254197e-01 3.106904e-01
(UANMEL7) GEN 1.314815 9.394537e-02 -8.514142e-02
BAJIO ENV 1.309969 2.138632e-01 -6.864685e-01
PARRAS ENV 1.311806 -7.921901e-01 1.825536e-01
TUNEL ENV 1.654858 5.783269e-01 5.039149e-01
> model$analysis
percent acum Df Sum.Sq Mean.Sq F.value Pr.F
PC1 63.8 63.8 24 3.046768 0.126949 0.39 0.9963
PC2 36.2 100.0 22 1.725944 0.078452 0.24 0.9999
> model$means
ENV GEN FRUTAM RESIDUAL
1 BAJIO B 0.9444444 -3.257275e-02
2 BAJIO BxI 1.3611111 7.036302e-02
3 BAJIO BXI 1.5439998 1.028691e-15
4 BAJIO BxJ 1.3333333 1.120297e-01
5 BAJIO BXJ 1.0995554 -5.139118e-16
6 BAJIO BxN 1.3333333 9.185802e-04
7 BAJIO BXN 1.0995554 1.548241e-16
8 BAJIO CRUISER 1.2777778 -6.960978e-02
9 BAJIO ExK 1.4722222 7.036302e-02
10 BAJIO EXK 1.3078887 5.156466e-16
11 BAJIO ExL 1.1388889 7.036302e-02
12 BAJIO EXL 1.0995554 4.202368e-16
13 BAJIO (ExL)(JxK) 1.5833333 6.001985e-02
14 BAJIO ExN 1.2777778 -2.685920e-02
15 BAJIO EXN 1.5439998 4.206704e-17
16 BAJIO I 1.2777778 -3.659061e-01
17 BAJIO (I)(ExL) 1.8055556 2.081680e-01
18 BAJIO (LxM)(B) 1.1388889 -8.812830e-02
19 BAJIO (N)(ExL) 1.6111111 2.266865e-01
20 BAJIO (UANMEL1) 1.3055556 -1.405423e-02
21 BAJIO (UANMEL2) 1.3888889 1.340939e-01
22 BAJIO (UANMEL4) 1.0502644 -2.907298e-01
23 BAJIO (UANMEL5) 1.1666667 -1.436839e-01
24 BAJIO (UANMEL7) 1.2777778 7.853836e-02
25 PARRAS B 0.8888889 -8.996546e-02
26 PARRAS BxI 1.2222222 -7.036302e-02
27 PARRAS BXI 1.5458370 -5.113097e-16
28 PARRAS BxJ 1.1111111 -1.120297e-01
29 PARRAS BXJ 1.1013926 6.370772e-16
30 PARRAS BxN 1.3333333 -9.185802e-04
31 PARRAS BXN 1.1013926 2.484991e-16
32 PARRAS CRUISER 1.4444444 9.521972e-02
33 PARRAS ExK 1.3333333 -7.036302e-02
34 PARRAS EXK 1.3097259 -6.375109e-17
35 PARRAS ExL 1.0000000 -7.036302e-02
36 PARRAS EXL 1.1013926 1.409463e-16
37 PARRAS (ExL)(JxK) 1.2222222 -3.029284e-01
38 PARRAS ExN 1.3333333 2.685920e-02
39 PARRAS EXN 1.5458370 1.895185e-16
40 PARRAS I 2.0000000 3.544790e-01
41 PARRAS (I)(ExL) 1.6666667 6.744194e-02
42 PARRAS (LxM)(B) 1.4444444 2.155901e-01
43 PARRAS (N)(ExL) 1.1111111 -2.751506e-01
44 PARRAS (UANMEL1) 1.7777778 4.563308e-01
45 PARRAS (UANMEL2) 1.2222222 -3.440991e-02
46 PARRAS (UANMEL4) 1.4444444 1.016131e-01
47 PARRAS (UANMEL5) 1.1111111 -2.010766e-01
48 PARRAS (UANMEL7) 1.1111111 -8.996546e-02
49 TUNEL B 1.4444444 1.225382e-01
50 TUNEL BxI 1.6356371 2.515349e-16
51 TUNEL BXI 1.8888889 -4.761816e-16
52 TUNEL BxJ 1.5661927 7.884318e-16
53 TUNEL BXJ 1.4444444 -1.361758e-16
54 TUNEL BxN 1.6773038 1.153591e-16
55 TUNEL BXN 1.4444444 -5.334275e-16
56 TUNEL CRUISER 1.6666667 -2.560994e-02
57 TUNEL ExK 1.7467482 6.652665e-16
58 TUNEL EXK 1.6527778 -4.727121e-16
59 TUNEL ExL 1.4134149 1.050375e-15
60 TUNEL EXL 1.4444444 -5.750608e-16
61 TUNEL (ExL)(JxK) 2.1111111 2.429086e-01
62 TUNEL ExN 1.6495260 4.969983e-16
63 TUNEL EXN 1.8888889 -3.877107e-16
64 TUNEL I 2.0000000 1.142710e-02
65 TUNEL (I)(ExL) 1.6666667 -2.756099e-01
66 TUNEL (LxM)(B) 1.4444444 -1.274618e-01
67 TUNEL (N)(ExL) 1.7777778 4.846414e-02
68 TUNEL (UANMEL1) 1.2222222 -4.422766e-01
69 TUNEL (UANMEL2) 1.5000000 -9.968401e-02
70 TUNEL (UANMEL4) 1.8750000 1.891167e-01
71 TUNEL (UANMEL5) 2.0000000 3.447604e-01
72 TUNEL (UANMEL7) 1.5555556 1.142710e-02