Lab 7

Introduction to linear regression

Batter up The movie Moneyball focuses on the “quest for the secret of success in baseball”. It follows a low-budget team, the Oakland Athletics, who believed that underused statistics, such as a player’s ability to get on base, betterpredict the ability to score runs than typical statistics like home runs, RBIs (runs batted in), and batting average. Obtaining players who excelled in these underused statistics turned out to be much more affordable for the team.

In this lab we’ll be looking at data from all 30 Major League Baseball teams and examining the linear relationship between runs scored in a season and a number of other player statistics. Our aim will be to summarize these relationships both graphically and numerically in order to find which variable, if any, helps us best predict a team’s runs scored in a season.

The data Let’s load up the data for the 2011 season.

# download.file("http://www.openintro.org/stat/data/mlb11.RData", destfile = "mlb11.RData")
load("mlb11.RData")
head(mlb11)

##                  team runs at_bats hits homeruns bat_avg strikeouts
## 1       Texas Rangers  855    5659 1599      210   0.283        930
## 2      Boston Red Sox  875    5710 1600      203   0.280       1108
## 3      Detroit Tigers  787    5563 1540      169   0.277       1143
## 4  Kansas City Royals  730    5672 1560      129   0.275       1006
## 5 St. Louis Cardinals  762    5532 1513      162   0.273        978
## 6       New York Mets  718    5600 1477      108   0.264       1085
##   stolen_bases wins new_onbase new_slug new_obs
## 1          143   96      0.340    0.460   0.800
## 2          102   90      0.349    0.461   0.810
## 3           49   95      0.340    0.434   0.773
## 4          153   71      0.329    0.415   0.744
## 5           57   90      0.341    0.425   0.766
## 6          130   77      0.335    0.391   0.725

In addition to runs scored, there are seven traditionally used variables in the data set: at-bats, hits, home runs, batting average, strikeouts, stolen bases, and wins. There are also three newer variables: on-base percentage, slugging percentage, and on-base plus slugging. For the first portion of the analysis we’ll consider the seven traditional variables. At the end of the lab, you’ll work with the newer variables on your own.

Exercise 1:

What type of plot would you use to display the relationship between runs and one of the other numerical variables? Plot this relationship using the variable at_bats as the predictor. Does the relationship look linear? If you knew a team’s at_bats, would you be comfortable using a linear model to predict the number of runs?

plot(mlb11$at_bats, mlb11$runs, main = "At Bats VS Runs", xlab = "At Bats", ylab = "Runs")

Answer: I have used scatter plot to display the relationship between runs and at_bats. The relationship looks linear. It appears to be a positive correlation. I would feel comfortable using a linear model to predict the number of runs.

If the relationship looks linear, we can quantify the strength of the relationship with the correlation coefficient.

cor(mlb11$runs, mlb11$at_bats)

## [1] 0.610627

Sum of squared residuals

Think back to the way that we described the distribution of a single variable. Recall that we discussed characteristics such as center, spread, and shape. It’s also useful to be able to describe the relationship of two numerical variables, such as runs and at_bats above.

Exercise 2:

Looking at your plot from the previous exercise, describe the relationship between these two variables. Make sure to discuss the form, direction, and strength of the relationship as well as any unusual observations.

Answer: The graph shows that it is a positive linear relationship between runs and at_bats with several outliers. Correlation coefficien confirms that, it is 0.61 which is close to strong positive relationship.

Just as we used the mean and standard deviation to summarize a single variable, we can summarize the relationship between these two variables by finding the line that best follows their association. Use the following interactive function to select the line that you think does the best job of going through the cloud of points.

plot_ss(x = mlb11$at_bats, y = mlb11$runs)

## Click two points to make a line.
                                
## Call:
## lm(formula = y ~ x, data = pts)
## 
## Coefficients:
## (Intercept)            x  
##  -2789.2429       0.6305  
## 
## Sum of Squares:  123721.9

After running this command, you’ll be prompted to click two points on the plot to define a line. Once you’ve done that, the line you specified will be shown in black and the residuals in blue. Note that there are 30 residuals, one for each of the 30 observations. Recall that the residuals are the difference between the observed values and the values predicted by the line:

ei=yi−ŷ i

The most common way to do linear regression is to select the line that minimizes the sum of squared residuals. To visualize the squared residuals, you can rerun the plot command and add the argument showSquares = TRUE.

plot_ss(x = mlb11$at_bats, y = mlb11$runs, showSquares = TRUE)

## Click two points to make a line.
                                
## Call:
## lm(formula = y ~ x, data = pts)
## 
## Coefficients:
## (Intercept)            x  
##  -2789.2429       0.6305  
## 
## Sum of Squares:  123721.9

Note that the output from the plot_ss function provides you with the slope and intercept of your line as well as the sum of squares.

Exercise 3:

Using plot_ss, choose a line that does a good job of minimizing the sum of squares. Run the function several times. What was the smallest sum of squares that you got? How does it compare to your neighbors?

plot_ss(x = mlb11$at_bats, y = mlb11$runs, showSquares = TRUE)

## Click two points to make a line.
                                
## Call:
## lm(formula = y ~ x, data = pts)
## 
## Coefficients:
## (Intercept)            x  
##  -2789.2429       0.6305  
## 
## Sum of Squares:  123721.9

Answer: The sum of squares is consistent at 123721.9, because this function is designed to provide the min sum of squares possible. I assume that my neighbors would receive the same sum of squares.

The linear model

It is rather cumbersome to try to get the correct least squares line, i.e. the line that minimizes the sum of squared residuals, through trial and error. Instead we can use the lm function in R to fit the linear model (a.k.a. regression line).

m1 <- lm(runs ~ at_bats, data = mlb11)

The first argument in the function lm is a formula that takes the form y ~ x. Here it can be read that we want to make a linear model of runs as a function of at_bats. The second argument specifies that R should look in the mlb11 data frame to find the runs and at_bats variables.

The output of lm is an object that contains all of the information we need about the linear model that was just fit. We can access this information using the summary function.

summary(m1)

## 
## Call:
## lm(formula = runs ~ at_bats, data = mlb11)
## 
## Residuals:
##     Min      1Q  Median      3Q     Max 
## -125.58  -47.05  -16.59   54.40  176.87 
## 
## Coefficients:
##               Estimate Std. Error t value Pr(>|t|)    
## (Intercept) -2789.2429   853.6957  -3.267 0.002871 ** 
## at_bats         0.6305     0.1545   4.080 0.000339 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Residual standard error: 66.47 on 28 degrees of freedom
## Multiple R-squared:  0.3729, Adjusted R-squared:  0.3505 
## F-statistic: 16.65 on 1 and 28 DF,  p-value: 0.0003388

Let’s consider this output piece by piece. First, the formula used to describe the model is shown at the top. After the formula you find the five-number summary of the residuals. The “Coefficients” table shown next is key; its first column displays the linear model’s y-intercept and the coefficient of at_bats. With this table, we can write down the least squares regression line for the linear model:

ŷ =−2789.2429+0.6305∗atbats

One last piece of information we will discuss from the summary output is the Multiple R-squared, or more simply, R2. The R2 value represents the proportion of variability in the response variable that is explained by the explanatory variable. For this model, 37.3% of the variability in runs is explained by at-bats.

Exercise 4:

Fit a new model that uses homeruns to predict runs. Using the estimates from the R output, write the equation of the regression line. What does the slope tell us in the context of the relationship between success of a team and its home runs?

m2 <- lm(runs ~ homeruns, data = mlb11)
summary(m2)

## 
## Call:
## lm(formula = runs ~ homeruns, data = mlb11)
## 
## Residuals:
##     Min      1Q  Median      3Q     Max 
## -91.615 -33.410   3.231  24.292 104.631 
## 
## Coefficients:
##             Estimate Std. Error t value Pr(>|t|)    
## (Intercept) 415.2389    41.6779   9.963 1.04e-10 ***
## homeruns      1.8345     0.2677   6.854 1.90e-07 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Residual standard error: 51.29 on 28 degrees of freedom
## Multiple R-squared:  0.6266, Adjusted R-squared:  0.6132 
## F-statistic: 46.98 on 1 and 28 DF,  p-value: 1.9e-07

Answer: y = 415.2389 + 1.8345 * homeruns. The slope of a regression line represents the rate of change in ‘runs’ as ‘homeruns’ changes. In this case this rate equal to 1.8345.

Prediction and prediction errors

Let’s create a scatterplot with the least squares line laid on top.

plot(mlb11$runs ~ mlb11$at_bats)
abline(m1)

The function abline plots a line based on its slope and intercept. Here, we used a shortcut by providing the model m1, which contains both parameter estimates. This line can be used to predict y at any value of x. When predictions are made for values of x that are beyond the range of the observed data, it is referred to as extrapolation and is not usually recommended. However, predictions made within the range of the data are more reliable. They’re also used to compute the residuals.

Exercise 5:

If a team manager saw the least squares regression line and not the actual data, how many runs would he or she predict for a team with 5,578 at-bats? Is this an overestimate or an underestimate, and by how much? In other words, what is the residual for this prediction?

at_bats <- 5578
runs <- -2789.2429 + 0.6305 * at_bats
runs

## [1] 727.6861

Answer: If we look at the closest corresponding data to 5578 at_bats this will be Philadelphia Phillies (5579 at bats). The actual runs are 713.

713 - 727.6861

## [1] -14.6861

The residual is -14.6861. This is an over-estimation.

Model diagnostics

To assess whether the linear model is reliable, we need to check for (1) linearity, (2) nearly normal residuals, and (3) constant variability.

Linearity: You already checked if the relationship between runs and at-bats is linear using a scatterplot. We should also verify this condition with a plot of the residuals vs. at-bats. Recall that any code following a # is intended to be a comment that helps understand the code but is ignored by R.

plot(m1$residuals ~ mlb11$at_bats)
abline(h = 0, lty = 3)  # adds a horizontal dashed line at y = 0

Exercise 6:

Is there any apparent pattern in the residuals plot? What does this indicate about the linearity of the relationship between runs and at-bats?

Answer: The majority of variable are randomly dispersed around the horizontal axis. It means that a linear regression model is appropriate for the data.

Nearly normal residuals: To check this condition, we can look at a histogram

hist(m1$residuals)

or a normal probability plot of the residuals.

qqnorm(m1$residuals)
qqline(m1$residuals)  # adds diagonal line to the normal prob plot

Exercise 7

Based on the histogram and the normal probability plot, does the nearly normal residuals condition appear to be met?

Answer: The residuals appear to be nearly normal.

Constant variability:

Exercise 8:

Based on the plot in (1), does the constant variability condition appear to be met?

Answer: Yes, as when we plot the individual error against the predicted value, the variance of the error predicted value is relatively constant.

On Your Own

Choose another traditional variable from mlb11 that you think might be a good predictor of runs. Produce a scatterplot of the two variables and fit a linear model. At a glance, does there seem to be a linear relationship?

plot(mlb11$hits, mlb11$runs, main = "Hits VS Runs", xlab = "Hits", ylab = "Runs")

m3 <- lm(runs ~ hits, data = mlb11)

Answer: it seems to be a linear relationship between Hits and Runs.

How does this relationship compare to the relationship between runs and at_bats? Use the R2 values from the two model summaries to compare. Does your variable seem to predict runs better than at_bats? How can you tell?

summary(m1)

## 
## Call:
## lm(formula = runs ~ at_bats, data = mlb11)
## 
## Residuals:
##     Min      1Q  Median      3Q     Max 
## -125.58  -47.05  -16.59   54.40  176.87 
## 
## Coefficients:
##               Estimate Std. Error t value Pr(>|t|)    
## (Intercept) -2789.2429   853.6957  -3.267 0.002871 ** 
## at_bats         0.6305     0.1545   4.080 0.000339 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Residual standard error: 66.47 on 28 degrees of freedom
## Multiple R-squared:  0.3729, Adjusted R-squared:  0.3505 
## F-statistic: 16.65 on 1 and 28 DF,  p-value: 0.0003388

summary(m3)

## 
## Call:
## lm(formula = runs ~ hits, data = mlb11)
## 
## Residuals:
##      Min       1Q   Median       3Q      Max 
## -103.718  -27.179   -5.233   19.322  140.693 
## 
## Coefficients:
##              Estimate Std. Error t value Pr(>|t|)    
## (Intercept) -375.5600   151.1806  -2.484   0.0192 *  
## hits           0.7589     0.1071   7.085 1.04e-07 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Residual standard error: 50.23 on 28 degrees of freedom
## Multiple R-squared:  0.6419, Adjusted R-squared:  0.6292 
## F-statistic:  50.2 on 1 and 28 DF,  p-value: 1.043e-07

Answer: R2 (at_bats) = 0.3729 and R2 (hits) = 0.6419

It seems that hits is a better predictor of runs.

Now that you can summarize the linear relationship between two variables, investigate the relationships between runs and each of the other five traditional variables. Which variable best predicts runs? Support your conclusion using the graphical and numerical methods we’ve discussed (for the sake of conciseness, only include output for the best variable, not all five).

at_bats <- cor(mlb11$at_bats, mlb11$runs)
hits <- cor(mlb11$hits, mlb11$runs)
homeruns <- cor(mlb11$homeruns, mlb11$runs)
bat_avg <- cor(mlb11$bat_avg, mlb11$runs)
strikeouts <- cor(mlb11$strikeouts, mlb11$runs)
stolen_bases <- cor(mlb11$stolen_bases, mlb11$runs)
wins <- cor(mlb11$wins, mlb11$runs)
at_bats

## [1] 0.610627

hits

## [1] 0.8012108

homeruns

## [1] 0.7915577

bat_avg

## [1] 0.8099859

strikeouts

## [1] -0.4115312

stolen_bases

## [1] 0.05398141

wins

## [1] 0.6008088

Answer: bat_avg best predicts runs, because its correlation coefficient closest to 1.

m4 <- lm(runs ~ bat_avg, data = mlb11)
summary(m4)

## 
## Call:
## lm(formula = runs ~ bat_avg, data = mlb11)
## 
## Residuals:
##     Min      1Q  Median      3Q     Max 
## -94.676 -26.303  -5.496  28.482 131.113 
## 
## Coefficients:
##             Estimate Std. Error t value Pr(>|t|)    
## (Intercept)   -642.8      183.1  -3.511  0.00153 ** 
## bat_avg       5242.2      717.3   7.308 5.88e-08 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Residual standard error: 49.23 on 28 degrees of freedom
## Multiple R-squared:  0.6561, Adjusted R-squared:  0.6438 
## F-statistic: 53.41 on 1 and 28 DF,  p-value: 5.877e-08

plot(mlb11$runs ~ mlb11$bat_avg)
abline(m4)

plot(m4$residuals ~ mlb11$bat_avg)
abline(h = 0, lty = 3)

Now examine the three newer variables. These are the statistics used by the author of Moneyball to predict a teams success. In general, are they more or less effective at predicting runs that the old variables? Explain using appropriate graphical and numerical evidence. Of all ten variables we’ve analyzed, which seems to be the best predictor of runs? Using the limited (or not so limited) information you know about these baseball statistics, does your result make sense?

new_onbase <- cor(mlb11$new_onbase, mlb11$runs)
new_slug <- cor(mlb11$new_slug, mlb11$runs)
new_obs <- cor(mlb11$new_obs, mlb11$runs)
new_onbase

## [1] 0.9214691

new_slug

## [1] 0.9470324

new_obs

## [1] 0.9669163

new_obs has the highest coefficient of correlation among older and newer variables. In general newer variables are more effective at predicting runs.

m5 <- lm(runs ~ new_onbase, data = mlb11)
summary(m5)

## 
## Call:
## lm(formula = runs ~ new_onbase, data = mlb11)
## 
## Residuals:
##     Min      1Q  Median      3Q     Max 
## -58.270 -18.335   3.249  19.520  69.002 
## 
## Coefficients:
##             Estimate Std. Error t value Pr(>|t|)    
## (Intercept)  -1118.4      144.5  -7.741 1.97e-08 ***
## new_onbase    5654.3      450.5  12.552 5.12e-13 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Residual standard error: 32.61 on 28 degrees of freedom
## Multiple R-squared:  0.8491, Adjusted R-squared:  0.8437 
## F-statistic: 157.6 on 1 and 28 DF,  p-value: 5.116e-13

plot(mlb11$new_onbase, mlb11$runs)
abline(m5)

plot(m5$residuals ~ mlb11$new_onbase)
abline(h = 0, lty = 3)

m6 <- lm(runs ~ new_slug, data = mlb11)
plot(mlb11$new_slug, mlb11$runs)
abline(m6)

summary(m6)

## 
## Call:
## lm(formula = runs ~ new_slug, data = mlb11)
## 
## Residuals:
##    Min     1Q Median     3Q    Max 
## -45.41 -18.66  -0.91  16.29  52.29 
## 
## Coefficients:
##             Estimate Std. Error t value Pr(>|t|)    
## (Intercept)  -375.80      68.71   -5.47 7.70e-06 ***
## new_slug     2681.33     171.83   15.61 2.42e-15 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Residual standard error: 26.96 on 28 degrees of freedom
## Multiple R-squared:  0.8969, Adjusted R-squared:  0.8932 
## F-statistic: 243.5 on 1 and 28 DF,  p-value: 2.42e-15

plot(m6$residuals ~ mlb11$new_slug)
abline(h = 0, lty = 3)

m7 <- lm(runs ~ new_obs, data = mlb11)
plot(mlb11$new_obs, mlb11$runs)
abline(m7)

summary(m7)

## 
## Call:
## lm(formula = runs ~ new_obs, data = mlb11)
## 
## Residuals:
##     Min      1Q  Median      3Q     Max 
## -43.456 -13.690   1.165  13.935  41.156 
## 
## Coefficients:
##             Estimate Std. Error t value Pr(>|t|)    
## (Intercept)  -686.61      68.93  -9.962 1.05e-10 ***
## new_obs      1919.36      95.70  20.057  < 2e-16 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Residual standard error: 21.41 on 28 degrees of freedom
## Multiple R-squared:  0.9349, Adjusted R-squared:  0.9326 
## F-statistic: 402.3 on 1 and 28 DF,  p-value: < 2.2e-16

plot(m7$residuals ~ mlb11$new_obs)
abline(h = 0, lty = 3)

Check the model diagnostics for the regression model with the variable you decided was the best predictor for runs.

linearity

plot(mlb11$new_obs, mlb11$runs)

The relationship looks linear. It appears to be a positive correlation.

nearly normal residuals

qqnorm(m7$residuals)
qqline(m7$residuals)

hist(m7$residuals)

The residuals appear to be nearly normal.

constant variability.

plot(m7$residuals ~ mlb11$new_obs)
abline(h = 0, lty = 3)

Constant variability condition is met as when we plot the individual error against the predicted value, the variance of the error predicted value is relatively constant.

As all conditions are met we can conclude that the linear model is reliable.