About this Flexdashboard

A Flexdashboard inspired by blog post Plotting Microtiter Plate Maps by Brian Connelly May 1, 2014 from https://www.r-bloggers.com/plotting-microtiter-plate-maps/ using library(highcharter) for the microplate visualization and library(DT) to show the data (fake data) used.

About the information in the tabs.

• The Microplate Template tab contains the template of a 96-well plate before sample analysis using a microplate reader.
• The Quantification Results tab contains the results after running the 96-well plate (in silico) on a microplate reader. Size: X.X shows the quantification result after the microplate reading.
• The Calculated DNA Concentration tab shows the calculated DNA concentration. Size: X.X shows the calculated DNA concentration. I calculated the DNA Concentration using the equation \(y = mx + b\). My in silico Standard Curves results were \(Y = 10x + 0.99997\) and \(R^{2}\) = 0.99997.
• The Fake Data tab contains the fake data that I created for this flexdashboard.

The plots are interactive. Placing the mouse cursor on the plot shows information about the dataset (Fake Data). And clicking on the legend labels will change the information shown in the plot.

References

Blog post that inspired this Flexdashboard:

• Plotting Microtiter Plate Maps by Brian Connelly May 1, 2014. https://www.r-bloggers.com/plotting-microtiter-plate-maps/

I used the following libraries to make this dashboard:

• library(highcharter) : http://jkunst.com/highcharter/index.html
• require(reshape2) : https://github.com/hadley/reshape
• library(DT) : https://rstudio.github.io/DT/
• R Markdown from RStudio: https://rmarkdown.rstudio.com/
• flexdashboard: Easy interactive dashboards for R : https://rmarkdown.rstudio.com/flexdashboard/index.html

Microplate Template

Quantification Results

Calculated DNA Concentration (ng/\(\mu\)L)

My Fake Data