Trees by clade

Species analyzed by clade

Spectrograms on phylogenies

Topazes

Hermits

Mangoes

Brilliants

Coquettes

Mtn. Gems + Patagona

Bees

Emeralds

Bird tree Phylogeny

Mcguire (left) vs Bird tree (right)

Session information

## R version 3.4.4 (2018-03-15)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 16.04.5 LTS
## 
## Matrix products: default
## BLAS: /usr/lib/openblas-base/libblas.so.3
## LAPACK: /usr/lib/libopenblasp-r0.2.18.so
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] parallel  stats     graphics  grDevices utils     datasets  methods  
## [8] base     
## 
## other attached packages:
##  [1] pbmcapply_1.2.5    future_1.9.0       pbapply_1.3-4     
##  [4] googledrive_0.1.1  phytools_0.6-60    ape_5.2           
##  [7] taxize_0.9.4       Rraven_1.0.5       warbleR_1.1.15    
## [10] NatureSounds_1.0.0 seewave_2.1.0      tuneR_1.3.3       
## [13] maps_3.3.0         dplyr_0.7.7        stringdist_0.9.5.1
## [16] knitr_1.20         kableExtra_0.9.0   googlesheets_0.3.0
## [19] RColorBrewer_1.1-2 ggplot2_3.0.0     
## 
## loaded via a namespace (and not attached):
##  [1] nlme_3.1-137            bitops_1.0-6           
##  [3] bold_0.5.0              httr_1.3.1             
##  [5] rprojroot_1.3-2         numDeriv_2016.8-1      
##  [7] Deriv_3.8.5             tools_3.4.4            
##  [9] backports_1.1.2         R6_2.3.0               
## [11] lazyeval_0.2.1          colorspace_1.3-2       
## [13] withr_2.1.2             phangorn_2.4.0         
## [15] tidyselect_0.2.5        mnormt_1.5-5           
## [17] bioacoustics_0.1.5      moments_0.14           
## [19] curl_3.2                compiler_3.4.4         
## [21] soundgen_1.3.1          rvest_0.3.2            
## [23] animation_2.5           expm_0.999-3           
## [25] xml2_1.2.0              scales_1.0.0           
## [27] quadprog_1.5-5          readr_1.1.1            
## [29] proxy_0.4-22            dtw_1.20-1             
## [31] stringr_1.3.1           digest_0.6.16          
## [33] Sim.DiffProc_4.2        rmarkdown_1.10         
## [35] jpeg_0.1-8              pkgconfig_2.0.2        
## [37] htmltools_0.3.6         plotrix_3.7-4          
## [39] rlang_0.2.2             rstudioapi_0.7         
## [41] httpcode_0.2.0          bindr_0.1.1            
## [43] combinat_0.0-8          zoo_1.8-4              
## [45] jsonlite_1.5            RCurl_1.95-4.11        
## [47] magrittr_1.5            Matrix_1.2-14          
## [49] Rcpp_0.12.19            munsell_0.5.0          
## [51] scatterplot3d_0.3-41    stringi_1.2.4          
## [53] yaml_2.2.0              clusterGeneration_1.3.4
## [55] MASS_7.3-50             plyr_1.8.4             
## [57] grid_3.4.4              listenv_0.7.0          
## [59] crayon_1.3.4            lattice_0.20-35        
## [61] hms_0.4.2               pillar_1.3.0           
## [63] igraph_1.2.2            rjson_0.2.20           
## [65] fftw_1.0-4              reshape2_1.4.3         
## [67] codetools_0.2-15        fastmatch_1.1-0        
## [69] crul_0.6.0              glue_1.3.0             
## [71] evaluate_0.11           data.table_1.11.4      
## [73] foreach_1.4.4           cellranger_1.1.0       
## [75] openssl_1.0.2           gtable_0.2.0           
## [77] purrr_0.2.5             reshape_0.8.7          
## [79] assertthat_0.2.0        pracma_2.1.8           
## [81] coda_0.19-2             viridisLite_0.3.0      
## [83] signal_0.7-6            tibble_1.4.2           
## [85] iterators_1.0.10        bindrcpp_0.2.2         
## [87] globals_0.12.2