Chromosome 4
Benazir
March 15, 2018
The true phenotype
The results below correspond to the sum of posterior inclusion probabilities for chr 4 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.
Pvalues for 1000 simulations
Below are pvalues for sum mean max start as well as boundaries of each chunk
sum mean max start end
1 0.163 0.163 0.416 0.1 5.5
2 0.085 0.085 0.382 3.6 6.9
3 0.305 0.305 0.392 5.5 8.3
4 0.925 0.925 0.368 6.9 10.0
5 0.612 0.612 0.338 8.3 11.3
6 0.488 0.488 0.539 10.0 13.1
7 0.137 0.137 0.245 11.3 14.5
8 0.091 0.091 0.300 13.1 16.0
9 0.087 0.087 0.169 14.5 17.8
10 0.078 0.078 0.138 16.1 20.1
11 0.143 0.143 0.015 17.8 21.9
12 0.538 0.538 0.047 20.1 24.0
13 0.374 0.374 0.888 21.9 25.7
14 0.261 0.261 0.762 24.0 27.9
15 0.290 0.290 0.142 25.7 30.4
16 0.627 0.627 0.105 27.9 33.0
17 0.795 0.795 0.366 30.4 35.9
18 0.479 0.479 0.804 33.0 37.4
19 0.118 0.118 0.264 35.9 39.1
20 0.371 0.371 0.346 37.4 41.3
21 0.736 0.736 0.810 39.1 43.3
22 0.780 0.780 0.405 41.3 46.6
23 0.752 0.752 0.343 43.4 53.2
24 0.195 0.195 0.176 46.6 55.4
25 0.171 0.171 0.186 53.3 57.6
26 0.187 0.187 0.689 55.4 59.7
27 0.177 0.177 0.236 57.6 62.4
28 0.108 0.108 0.204 59.7 65.3
29 0.078 0.078 0.371 62.4 67.6
30 0.237 0.237 0.498 65.3 70.8
31 0.831 0.831 0.771 67.6 73.8
32 0.920 0.920 0.256 70.8 76.5
33 0.016 0.016 0.123 73.9 78.4
34 0.042 0.042 0.021 76.5 80.2
35 0.457 0.457 0.532 78.4 82.9
36 0.312 0.312 0.819 80.2 85.0
37 0.748 0.748 0.901 82.9 87.4
38 0.784 0.784 0.789 85.0 90.0
39 0.321 0.321 0.041 87.4 92.2
40 0.005 0.005 0.022 90.0 95.4
41 0.222 0.222 0.066 92.2 97.2
42 0.019 0.019 0.186 95.4 100.3
43 0.126 0.126 0.428 97.2 102.5
44 0.156 0.156 0.505 100.3 105.4
45 0.161 0.161 0.717 102.5 108.2
46 0.591 0.591 0.195 105.4 110.5
47 0.207 0.207 0.184 108.2 113.0
48 0.428 0.428 0.602 110.5 115.1
49 0.790 0.790 0.815 113.0 118.1
50 0.098 0.098 0.547 115.1 120.5
51 0.063 0.063 0.388 118.1 122.8
52 0.343 0.343 0.442 120.5 125.7
53 0.350 0.350 0.940 122.8 128.1
54 0.590 0.590 0.936 125.7 131.2
55 0.160 0.160 0.096 128.1 134.2
56 0.121 0.121 0.076 131.2 137.7
57 0.488 0.488 0.176 134.2 139.7
58 0.314 0.314 0.359 137.7 141.8
59 0.452 0.452 0.437 139.7 143.9
60 0.119 0.119 0.343 141.8 147.2
61 0.005 0.005 0.267 143.9 149.5
62 0.023 0.023 0.328 147.2 152.8
63 0.062 0.062 0.609 149.5 155.0
64 0.179 0.179 0.891 152.9 157.1
65 0.534 0.534 0.298 155.0 159.6
66 0.097 0.097 0.313 157.1 162.1
67 0.016 0.016 0.332 159.6 164.6
68 0.014 0.014 0.283 162.1 166.7
69 0.272 0.272 0.442 164.7 169.3
70 0.612 0.612 0.624 166.7 171.3
71 0.368 0.368 0.173 169.3 173.9
72 0.338 0.338 0.280 171.3 176.5
73 0.023 0.023 0.073 173.9 178.6
74 0.000 0.000 0.068 176.5 180.8
75 0.415 0.415 0.194 178.6 182.4
76 0.285 0.285 0.064 180.8 183.7
77 0.057 0.057 0.035 182.4 185.5
78 0.130 0.130 0.187 183.7 187.2
79 0.152 0.152 0.194 185.5 189.1
80 0.033 0.033 0.219 187.1 191.2Pvalues for 1000 simulations exceeding 0.05 confidence level
Below are the chunks whose p-values are below 0.05 in the corresponding category.
metric chunk pvalue start end
1 sum 33 0.016 73.9 78.4
2 sum 34 0.042 76.5 80.2
3 sum 40 0.005 90.0 95.4
4 sum 42 0.019 95.4 100.3
5 sum 61 0.005 143.9 149.5
6 sum 62 0.023 147.2 152.8
7 sum 67 0.016 159.6 164.6
8 sum 68 0.014 162.1 166.7
9 sum 73 0.023 173.9 178.6
10 sum 74 0.000 176.5 180.8
11 sum 80 0.033 187.1 191.2
12 mean 33 0.016 73.9 78.4
13 mean 34 0.042 76.5 80.2
14 mean 40 0.005 90.0 95.4
15 mean 42 0.019 95.4 100.3
16 mean 61 0.005 143.9 149.5
17 mean 62 0.023 147.2 152.8
18 mean 67 0.016 159.6 164.6
19 mean 68 0.014 162.1 166.7
20 mean 73 0.023 173.9 178.6
21 mean 74 0.000 176.5 180.8
22 mean 80 0.033 187.1 191.2
23 max 11 0.015 17.8 21.9
24 max 12 0.047 20.1 24.0
25 max 34 0.021 76.5 80.2
26 max 39 0.041 87.4 92.2
27 max 40 0.022 90.0 95.4
28 max 77 0.035 182.4 185.5