The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 3 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start   end
1  0.663 0.663 0.663   0.0   2.7
2  0.581 0.582 0.747   1.5   3.7
3  0.605 0.605 0.878   2.7   4.9
4  0.411 0.411 0.877   3.7   6.3
5  0.144 0.144 0.482   5.0   7.6
6  0.139 0.139 0.423   6.3   8.8
7  0.091 0.091 0.176   7.6  10.5
8  0.233 0.233 0.256   8.8  12.0
9  0.649 0.649 0.540  10.5  13.9
10 0.185 0.185 0.509  12.0  15.9
11 0.187 0.187 0.759  13.9  18.0
12 0.172 0.172 0.314  15.9  20.7
13 0.074 0.074 0.353  18.1  22.0
14 0.224 0.224 0.323  20.7  24.0
15 0.001 0.001 0.045  22.0  25.4
16 0.007 0.007 0.094  24.0  27.6
17 0.488 0.488 0.828  25.4  29.4
18 0.195 0.195 0.763  27.6  31.0
19 0.094 0.094 0.325  29.4  33.0
20 0.438 0.438 0.389  31.0  35.5
21 0.345 0.346 0.589  33.0  37.5
22 0.281 0.282 0.831  35.5  39.5
23 0.370 0.371 0.124  37.5  42.1
24 0.231 0.232 0.089  39.5  44.7
25 0.574 0.574 0.184  42.1  46.6
26 0.197 0.199 0.197  44.7  53.1
27 0.014 0.015 0.096  46.6  54.8
28 0.020 0.020 0.054  53.1  56.3
29 0.595 0.598 0.498  54.8  58.6
30 0.491 0.494 0.373  56.3  60.0
31 0.407 0.409 0.428  58.6  61.0
32 0.362 0.363 0.352  60.0  62.6
33 0.138 0.138 0.302  61.0  64.1
34 0.091 0.091 0.267  62.6  65.2
35 0.165 0.167 0.429  64.1  67.1
36 0.075 0.076 0.124  65.2  68.9
37 0.166 0.166 0.065  67.2  70.9
38 0.236 0.237 0.555  68.9  72.5
39 0.012 0.013 0.217  70.9  74.1
40 0.030 0.031 0.320  72.5  76.9
41 0.021 0.021 0.194  74.1  79.7
42 0.022 0.022 0.141  76.9  82.5
43 0.010 0.013 0.161  79.7  85.8
44 0.025 0.025 0.128  82.5  88.7
45 0.005 0.005 0.131  85.8  97.5
46 0.038 0.038 0.341  88.7 100.6
47 0.682 0.684 0.841  97.6 103.2
48 0.420 0.422 0.894 100.6 106.0
49 0.002 0.002 0.015 103.2 108.5
50 0.002 0.002 0.024 106.0 110.7
51 0.121 0.123 0.099 108.5 113.2
52 0.087 0.090 0.115 110.7 115.4
53 0.477 0.481 0.852 113.2 117.8
54 0.366 0.368 0.810 115.4 119.5
55 0.208 0.208 0.771 117.8 121.6
56 0.070 0.073 0.060 119.5 124.1
57 0.032 0.033 0.071 121.6 126.0
58 0.155 0.157 0.733 124.1 128.1
59 0.697 0.699 0.937 126.0 131.1
60 0.721 0.721 0.665 128.2 133.4
61 0.364 0.366 0.953 131.1 135.2
62 0.298 0.300 0.102 133.4 137.1
63 0.449 0.451 0.226 135.2 140.5
64 0.158 0.158 0.413 137.1 142.0
65 0.238 0.239 0.533 140.5 144.5
66 0.455 0.457 0.537 142.0 146.6
67 0.470 0.470 0.634 144.5 148.9
68 0.672 0.672 0.691 146.6 150.9
69 0.212 0.212 0.229 148.9 153.1
70 0.799 0.802 0.258 150.9 155.6
71 0.541 0.543 0.281 153.2 158.2
72 0.582 0.587 0.093 155.6 160.5
73 0.348 0.348 0.095 158.2 163.0
74 0.721 0.723 0.989 160.5 165.6
75 0.817 0.819 0.443 163.0 169.0
76 0.758 0.761 0.461 165.6 171.4
77 0.374 0.375 0.288 169.0 173.5
78 0.032 0.035 0.130 171.4 175.4
79 0.066 0.067 0.119 173.5 177.6
80 0.122 0.123 0.828 175.4 179.8
81 0.081 0.082 0.621 177.6 183.1
82 0.012 0.013 0.047 179.8 185.9
83 0.003 0.004 0.095 183.1 188.2
84 0.015 0.016 0.065 185.9 189.7
85 0.046 0.047 0.095 188.2 191.4
86 0.164 0.165 0.909 189.7 193.1
87 0.026 0.026 0.152 191.4 195.2
88 0.177 0.177 0.434 193.1 197.8
89 0.021 0.021 0.268 194.1 199.3

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue start   end
1     sum    15  0.001  22.0  25.4
2     sum    16  0.007  24.0  27.6
3     sum    27  0.014  46.6  54.8
4     sum    28  0.020  53.1  56.3
5     sum    39  0.012  70.9  74.1
6     sum    40  0.030  72.5  76.9
7     sum    41  0.021  74.1  79.7
8     sum    42  0.022  76.9  82.5
9     sum    43  0.010  79.7  85.8
10    sum    44  0.025  82.5  88.7
11    sum    45  0.005  85.8  97.5
12    sum    46  0.038  88.7 100.6
13    sum    49  0.002 103.2 108.5
14    sum    50  0.002 106.0 110.7
15    sum    57  0.032 121.6 126.0
16    sum    78  0.032 171.4 175.4
17    sum    82  0.012 179.8 185.9
18    sum    83  0.003 183.1 188.2
19    sum    84  0.015 185.9 189.7
20    sum    85  0.046 188.2 191.4
21    sum    87  0.026 191.4 195.2
22    sum    89  0.021 194.1 199.3
23   mean    15  0.001  22.0  25.4
24   mean    16  0.007  24.0  27.6
25   mean    27  0.015  46.6  54.8
26   mean    28  0.020  53.1  56.3
27   mean    39  0.013  70.9  74.1
28   mean    40  0.031  72.5  76.9
29   mean    41  0.021  74.1  79.7
30   mean    42  0.022  76.9  82.5
31   mean    43  0.013  79.7  85.8
32   mean    44  0.025  82.5  88.7
33   mean    45  0.005  85.8  97.5
34   mean    46  0.038  88.7 100.6
35   mean    49  0.002 103.2 108.5
36   mean    50  0.002 106.0 110.7
37   mean    57  0.033 121.6 126.0
38   mean    78  0.035 171.4 175.4
39   mean    82  0.013 179.8 185.9
40   mean    83  0.004 183.1 188.2
41   mean    84  0.016 185.9 189.7
42   mean    85  0.047 188.2 191.4
43   mean    87  0.026 191.4 195.2
44   mean    89  0.021 194.1 199.3
45    max    15  0.045  22.0  25.4
46    max    49  0.015 103.2 108.5
47    max    50  0.024 106.0 110.7
48    max    82  0.047 179.8 185.9