The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 1 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

      sum  mean   max start   end
1   0.622 0.622 0.455   0.7   5.4
2   0.839 0.839 0.853   4.3   7.4
3   0.534 0.534 0.415   5.4  10.3
4   0.311 0.311 0.324   7.4  13.8
5   0.085 0.085 0.331  10.3  15.2
6   0.099 0.099 0.153  13.9  17.7
7   0.340 0.340 0.693  15.2  19.3
8   0.642 0.642 0.554  17.8  21.0
9   0.782 0.782 0.616  19.3  23.6
10  0.470 0.470 0.494  21.1  26.5
11  0.076 0.076 0.169  23.6  30.2
12  0.021 0.021 0.125  26.5  31.9
13  0.723 0.724 0.064  30.2  34.6
14  0.873 0.873 0.730  31.9  37.6
15  0.220 0.220 0.884  34.6  40.3
16  0.202 0.202 0.744  37.6  42.6
17  0.393 0.393 0.920  40.3  45.0
18  0.171 0.171 0.179  42.6  48.0
19  0.073 0.073 0.503  45.0  51.0
20  0.035 0.035 0.084  48.0  54.5
21  0.015 0.015 0.150  51.0  56.1
22  0.533 0.533 0.476  54.5  57.6
23  0.103 0.103 0.278  56.1  58.8
24  0.039 0.039 0.320  57.6  60.9
25  0.173 0.173 0.723  58.8  62.7
26  0.354 0.354 0.314  60.9  64.6
27  0.675 0.675 0.199  62.7  66.4
28  0.923 0.923 0.268  64.6  68.0
29  0.435 0.436 0.341  66.4  70.3
30  0.453 0.453 0.258  68.0  73.0
31  0.195 0.195 0.341  70.3  75.9
32  0.075 0.075 0.194  73.0  77.6
33  0.019 0.019 0.062  75.9  80.1
34  0.038 0.038 0.075  77.6  82.0
35  0.001 0.001 0.087  80.1  84.0
36  0.001 0.001 0.086  82.0  85.7
37  0.027 0.027 0.380  84.0  87.9
38  0.699 0.699 0.728  85.7  90.1
39  0.306 0.306 0.706  87.9  92.1
40  0.062 0.062 0.331  90.1  94.9
41  0.017 0.017 0.296  92.1  96.7
42  0.002 0.002 0.232  94.9  99.4
43  0.006 0.006 0.196  96.7 101.5
44  0.309 0.309 0.131  99.4 104.3
45  0.068 0.068 0.359 101.5 107.0
46  0.264 0.264 0.632 104.3 109.2
47  0.157 0.157 0.275 107.1 111.1
48  0.052 0.052 0.137 109.2 112.5
49  0.522 0.522 0.595 111.1 115.3
50  0.289 0.289 0.160 112.5 116.8
51  0.107 0.107 0.123 115.4 119.1
52  0.115 0.115 0.349 116.8 145.6
53  0.098 0.098 0.899 119.1 151.0
54  0.179 0.179 0.720 145.6 153.6
55  0.184 0.185 0.271 151.0 156.3
56  0.060 0.060 0.401 153.6 158.1
57  0.131 0.131 0.525 156.3 160.3
58  0.496 0.496 0.755 158.1 161.6
59  0.530 0.531 0.674 160.3 163.3
60  0.493 0.493 0.939 161.6 164.7
61  0.776 0.776 0.369 163.3 166.1
62  0.619 0.619 0.318 164.7 167.8
63  0.410 0.411 0.867 166.1 169.6
64  0.023 0.023 0.392 167.8 171.6
65  0.078 0.078 0.453 169.7 174.3
66  0.476 0.476 0.672 171.6 176.3
67  0.315 0.315 0.587 174.3 178.7
68  0.712 0.712 0.732 176.3 180.4
69  0.639 0.639 0.518 178.7 182.2
70  0.854 0.854 0.682 180.4 184.5
71  0.298 0.298 0.040 182.2 186.6
72  0.089 0.089 0.050 184.5 189.1
73  0.246 0.246 0.337 186.6 191.8
74  0.014 0.014 0.260 189.1 194.1
75  0.041 0.041 0.124 191.8 197.1
76  0.011 0.011 0.494 194.1 199.1
77  0.022 0.022 0.472 197.1 200.9
78  0.398 0.398 0.343 199.2 202.6
79  0.221 0.221 0.407 200.9 204.8
80  0.405 0.405 0.602 202.6 206.6
81  0.279 0.279 0.510 204.8 208.1
82  0.289 0.289 0.660 206.6 209.9
83  0.551 0.551 0.600 208.1 212.0
84  0.751 0.751 0.987 209.9 213.9
85  0.702 0.702 0.836 212.0 215.4
86  0.426 0.427 0.698 213.9 217.2
87  0.713 0.713 0.511 215.4 219.1
88  0.839 0.839 0.972 217.2 221.2
89  0.541 0.542 0.759 219.1 223.6
90  0.072 0.072 0.587 221.2 225.7
91  0.061 0.061 0.610 223.6 228.0
92  0.035 0.035 0.508 225.7 229.6
93  0.082 0.082 0.457 228.0 231.1
94  0.422 0.422 0.790 229.6 232.5
95  0.185 0.185 0.336 231.1 234.6
96  0.447 0.447 0.329 232.5 235.9
97  0.864 0.864 0.608 234.6 237.4
98  0.509 0.509 0.556 235.9 239.0
99  0.695 0.695 0.108 237.4 240.5
100 0.881 0.881 0.065 239.0 242.7
101 0.594 0.594 0.773 240.6 244.4
102 0.343 0.343 0.222 242.7 247.1
103 0.424 0.424 0.174 242.7 247.2

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue start   end
1     sum    12  0.021  26.5  31.9
2     sum    20  0.035  48.0  54.5
3     sum    21  0.015  51.0  56.1
4     sum    24  0.039  57.6  60.9
5     sum    33  0.019  75.9  80.1
6     sum    34  0.038  77.6  82.0
7     sum    35  0.001  80.1  84.0
8     sum    36  0.001  82.0  85.7
9     sum    37  0.027  84.0  87.9
10    sum    41  0.017  92.1  96.7
11    sum    42  0.002  94.9  99.4
12    sum    43  0.006  96.7 101.5
13    sum    64  0.023 167.8 171.6
14    sum    74  0.014 189.1 194.1
15    sum    75  0.041 191.8 197.1
16    sum    76  0.011 194.1 199.1
17    sum    77  0.022 197.1 200.9
18    sum    92  0.035 225.7 229.6
19   mean    12  0.021  26.5  31.9
20   mean    20  0.035  48.0  54.5
21   mean    21  0.015  51.0  56.1
22   mean    24  0.039  57.6  60.9
23   mean    33  0.019  75.9  80.1
24   mean    34  0.038  77.6  82.0
25   mean    35  0.001  80.1  84.0
26   mean    36  0.001  82.0  85.7
27   mean    37  0.027  84.0  87.9
28   mean    41  0.017  92.1  96.7
29   mean    42  0.002  94.9  99.4
30   mean    43  0.006  96.7 101.5
31   mean    64  0.023 167.8 171.6
32   mean    74  0.014 189.1 194.1
33   mean    75  0.041 191.8 197.1
34   mean    76  0.011 194.1 199.1
35   mean    77  0.022 197.1 200.9
36   mean    92  0.035 225.7 229.6
37    max    71  0.040 182.2 186.6