IS 607 - Project 2:

The goal of this assignment is to give you practice in preparing different datasets for downstream analysis work. Your task is to: (1) Choose any three of the “wide” datasets identified in the Week 6 Discussion items. (You may use your own dataset; please don’t use my Sample Post dataset, since that was used in your Week 6 assignment!) For each of the three chosen datasets: ??? Create a .CSV file (or optionally, a MySQL database!) that includes all of the information included in the dataset. You’re encouraged to use a “wide” structure similar to how the information appears in the discussion item, so that you can practice tidying and transformations as described below. ??? Read the information from your .CSV file into R, and use tidyr and dplyr as needed to tidy and transform your data. [Most of your grade will be based on this step!] ??? Perform the analysis requested in the discussion item. ??? Your code should be in an R Markdown file, posted to rpubs.com, and should include narrative descriptions of your data cleanup work, analysis, and conclusions. (2) Please include in your homework submission, for each of the three chosen datasets: ??? The URL to the .Rmd file in your GitHub repository, and ??? The URL for your rpubs.com web page.

I have taken the dataset drug-use-by-age and prepared my .csv file.

library(knitr)
library(stringr)
library(tidyr)
library(dplyr)
## 
## Attaching package: 'dplyr'
## The following objects are masked from 'package:stats':
## 
##     filter, lag
## The following objects are masked from 'package:base':
## 
##     intersect, setdiff, setequal, union
library(ggplot2)
drug_usage <- read.csv("https://raw.githubusercontent.com/Riteshlohiya/Data607-Week6/master/drug_usage.csv", sep=",")
head(drug_usage)
##   age    n alcohol.use alcohol.frequency marijuana.use marijuana.frequency
## 1  12 2798         3.9                 3           1.1                   4
## 2  13 2757         8.5                 6           3.4                  15
## 3  14 2792        18.1                 5           8.7                  24
## 4  15 2956        29.2                 6          14.5                  25
## 5  16 3058        40.1                10          22.5                  30
## 6  17 3038        49.3                13          28.0                  36
##   cocaine.use cocaine.frequency crack.use crack.frequency heroin.use
## 1         0.1                 5       0.0               -        0.1
## 2         0.1                 1       0.0               3        0.0
## 3         0.1               5.5       0.0               -        0.1
## 4         0.5                 4       0.1             9.5        0.2
## 5         1.0                 7       0.0               1        0.1
## 6         2.0                 5       0.1              21        0.1
##   heroin.frequency hallucinogen.use hallucinogen.frequency inhalant.use
## 1             35.5              0.2                     52          1.6
## 2                -              0.6                      6          2.5
## 3                2              1.6                      3          2.6
## 4                1              2.1                      4          2.5
## 5             66.5              3.4                      3          3.0
## 6               64              4.8                      3          2.0
##   inhalant.frequency pain.releiver.use pain.releiver.frequency
## 1                 19               2.0                      36
## 2                 12               2.4                      14
## 3                  5               3.9                      12
## 4                5.5               5.5                      10
## 5                  3               6.2                       7
## 6                  4               8.5                       9
##   oxycontin.use oxycontin.frequency tranquilizer.use
## 1           0.1                24.5              0.2
## 2           0.1                  41              0.3
## 3           0.4                 4.5              0.9
## 4           0.8                   3              2.0
## 5           1.1                   4              2.4
## 6           1.4                   6              3.5
##   tranquilizer.frequency stimulant.use stimulant.frequency meth.use
## 1                   52.0           0.2                 2.0      0.0
## 2                   25.5           0.3                 4.0      0.1
## 3                    5.0           0.8                12.0      0.1
## 4                    4.5           1.5                 6.0      0.3
## 5                   11.0           1.8                 9.5      0.3
## 6                    7.0           2.8                 9.0      0.6
##   meth.frequency sedative.use sedative.frequency
## 1              -          0.2               13.0
## 2              5          0.1               19.0
## 3             24          0.2               16.5
## 4           10.5          0.4               30.0
## 5             36          0.2                3.0
## 6             48          0.5                6.5

Rename pain releiver to pain.releiver

drug_usage <- drug_usage %>%
  rename("pain releiver.use" = pain.releiver.use,
         "pain releiver.frequency" = pain.releiver.frequency)
drug_usage
##      age    n alcohol.use alcohol.frequency marijuana.use
## 1     12 2798         3.9                 3           1.1
## 2     13 2757         8.5                 6           3.4
## 3     14 2792        18.1                 5           8.7
## 4     15 2956        29.2                 6          14.5
## 5     16 3058        40.1                10          22.5
## 6     17 3038        49.3                13          28.0
## 7     18 2469        58.7                24          33.7
## 8     19 2223        64.6                36          33.4
## 9     20 2271        69.7                48          34.0
## 10    21 2354        83.2                52          33.0
## 11 22-23 4707        84.2                52          28.4
## 12 24-25 4591        83.1                52          24.9
## 13 26-29 2628        80.7                52          20.8
## 14 30-34 2864        77.5                52          16.4
## 15 35-49 7391        75.0                52          10.4
## 16 50-64 3923        67.2                52           7.3
## 17   65+ 2448        49.3                52           1.2
##    marijuana.frequency cocaine.use cocaine.frequency crack.use
## 1                    4         0.1                 5       0.0
## 2                   15         0.1                 1       0.0
## 3                   24         0.1               5.5       0.0
## 4                   25         0.5                 4       0.1
## 5                   30         1.0                 7       0.0
## 6                   36         2.0                 5       0.1
## 7                   52         3.2                 5       0.4
## 8                   60         4.1               5.5       0.5
## 9                   60         4.9                 8       0.6
## 10                  52         4.8                 5       0.5
## 11                  52         4.5                 5       0.5
## 12                  60         4.0                 6       0.5
## 13                  52         3.2                 5       0.4
## 14                  72         2.1                 8       0.5
## 15                  48         1.5                15       0.5
## 16                  52         0.9                36       0.4
## 17                  36         0.0                 -       0.0
##    crack.frequency heroin.use heroin.frequency hallucinogen.use
## 1                -        0.1             35.5              0.2
## 2                3        0.0                -              0.6
## 3                -        0.1                2              1.6
## 4              9.5        0.2                1              2.1
## 5                1        0.1             66.5              3.4
## 6               21        0.1               64              4.8
## 7               10        0.4               46              7.0
## 8                2        0.5              180              8.6
## 9                5        0.9               45              7.4
## 10              17        0.6               30              6.3
## 11               5        1.1             57.5              5.2
## 12               6        0.7               88              4.5
## 13               6        0.6               50              3.2
## 14              15        0.4               66              1.8
## 15              48        0.1              280              0.6
## 16              62        0.1               41              0.3
## 17               -        0.0              120              0.1
##    hallucinogen.frequency inhalant.use inhalant.frequency
## 1                      52          1.6                 19
## 2                       6          2.5                 12
## 3                       3          2.6                  5
## 4                       4          2.5                5.5
## 5                       3          3.0                  3
## 6                       3          2.0                  4
## 7                       4          1.8                  4
## 8                       3          1.4                  3
## 9                       2          1.5                  4
## 10                      4          1.4                  2
## 11                      3          1.0                  4
## 12                      2          0.8                  2
## 13                      3          0.6                  4
## 14                      2          0.4                3.5
## 15                      3          0.3                 10
## 16                     44          0.2               13.5
## 17                      2          0.0                  -
##    pain releiver.use pain releiver.frequency oxycontin.use
## 1                2.0                      36           0.1
## 2                2.4                      14           0.1
## 3                3.9                      12           0.4
## 4                5.5                      10           0.8
## 5                6.2                       7           1.1
## 6                8.5                       9           1.4
## 7                9.2                      12           1.7
## 8                9.4                      12           1.5
## 9               10.0                      10           1.7
## 10               9.0                      15           1.3
## 11              10.0                      15           1.7
## 12               9.0                      15           1.3
## 13               8.3                      13           1.2
## 14               5.9                      22           0.9
## 15               4.2                      12           0.3
## 16               2.5                      12           0.4
## 17               0.6                      24           0.0
##    oxycontin.frequency tranquilizer.use tranquilizer.frequency
## 1                 24.5              0.2                   52.0
## 2                   41              0.3                   25.5
## 3                  4.5              0.9                    5.0
## 4                    3              2.0                    4.5
## 5                    4              2.4                   11.0
## 6                    6              3.5                    7.0
## 7                    7              4.9                   12.0
## 8                  7.5              4.2                    4.5
## 9                   12              5.4                   10.0
## 10                13.5              3.9                    7.0
## 11                17.5              4.4                   12.0
## 12                  20              4.3                   10.0
## 13                13.5              4.2                   10.0
## 14                  46              3.6                    8.0
## 15                  12              1.9                    6.0
## 16                   5              1.4                   10.0
## 17                   -              0.2                    5.0
##    stimulant.use stimulant.frequency meth.use meth.frequency sedative.use
## 1            0.2                 2.0      0.0              -          0.2
## 2            0.3                 4.0      0.1              5          0.1
## 3            0.8                12.0      0.1             24          0.2
## 4            1.5                 6.0      0.3           10.5          0.4
## 5            1.8                 9.5      0.3             36          0.2
## 6            2.8                 9.0      0.6             48          0.5
## 7            3.0                 8.0      0.5             12          0.4
## 8            3.3                 6.0      0.4            105          0.3
## 9            4.0                12.0      0.9             12          0.5
## 10           4.1                10.0      0.6              2          0.3
## 11           3.6                10.0      0.6             46          0.2
## 12           2.6                10.0      0.7             21          0.2
## 13           2.3                 7.0      0.6             30          0.4
## 14           1.4                12.0      0.4             54          0.4
## 15           0.6                24.0      0.2            104          0.3
## 16           0.3                24.0      0.2             30          0.2
## 17           0.0               364.0      0.0              -          0.0
##    sedative.frequency
## 1                13.0
## 2                19.0
## 3                16.5
## 4                30.0
## 5                 3.0
## 6                 6.5
## 7                10.0
## 8                 6.0
## 9                 4.0
## 10                9.0
## 11               52.0
## 12               17.5
## 13                4.0
## 14               10.0
## 15               10.0
## 16              104.0
## 17               15.0

We can see that the data is in wide format. Need to bring the data to long format using gather():

drug_usage1 <- drug_usage %>%
  gather(key = "Group",value, -age, -n)%>% 
  arrange(age)
## Warning: attributes are not identical across measure variables;
## they will be dropped
drug_usage1
##       age    n                   Group value
## 1      12 2798             alcohol.use   3.9
## 2      12 2798       alcohol.frequency     3
## 3      12 2798           marijuana.use   1.1
## 4      12 2798     marijuana.frequency     4
## 5      12 2798             cocaine.use   0.1
## 6      12 2798       cocaine.frequency     5
## 7      12 2798               crack.use     0
## 8      12 2798         crack.frequency     -
## 9      12 2798              heroin.use   0.1
## 10     12 2798        heroin.frequency  35.5
## 11     12 2798        hallucinogen.use   0.2
## 12     12 2798  hallucinogen.frequency    52
## 13     12 2798            inhalant.use   1.6
## 14     12 2798      inhalant.frequency    19
## 15     12 2798       pain releiver.use     2
## 16     12 2798 pain releiver.frequency    36
## 17     12 2798           oxycontin.use   0.1
## 18     12 2798     oxycontin.frequency  24.5
## 19     12 2798        tranquilizer.use   0.2
## 20     12 2798  tranquilizer.frequency    52
## 21     12 2798           stimulant.use   0.2
## 22     12 2798     stimulant.frequency     2
## 23     12 2798                meth.use     0
## 24     12 2798          meth.frequency     -
## 25     12 2798            sedative.use   0.2
## 26     12 2798      sedative.frequency    13
## 27     13 2757             alcohol.use   8.5
## 28     13 2757       alcohol.frequency     6
## 29     13 2757           marijuana.use   3.4
## 30     13 2757     marijuana.frequency    15
## 31     13 2757             cocaine.use   0.1
## 32     13 2757       cocaine.frequency     1
## 33     13 2757               crack.use     0
## 34     13 2757         crack.frequency     3
## 35     13 2757              heroin.use     0
## 36     13 2757        heroin.frequency     -
## 37     13 2757        hallucinogen.use   0.6
## 38     13 2757  hallucinogen.frequency     6
## 39     13 2757            inhalant.use   2.5
## 40     13 2757      inhalant.frequency    12
## 41     13 2757       pain releiver.use   2.4
## 42     13 2757 pain releiver.frequency    14
## 43     13 2757           oxycontin.use   0.1
## 44     13 2757     oxycontin.frequency    41
## 45     13 2757        tranquilizer.use   0.3
## 46     13 2757  tranquilizer.frequency  25.5
## 47     13 2757           stimulant.use   0.3
## 48     13 2757     stimulant.frequency     4
## 49     13 2757                meth.use   0.1
## 50     13 2757          meth.frequency     5
## 51     13 2757            sedative.use   0.1
## 52     13 2757      sedative.frequency    19
## 53     14 2792             alcohol.use  18.1
## 54     14 2792       alcohol.frequency     5
## 55     14 2792           marijuana.use   8.7
## 56     14 2792     marijuana.frequency    24
## 57     14 2792             cocaine.use   0.1
## 58     14 2792       cocaine.frequency   5.5
## 59     14 2792               crack.use     0
## 60     14 2792         crack.frequency     -
## 61     14 2792              heroin.use   0.1
## 62     14 2792        heroin.frequency     2
## 63     14 2792        hallucinogen.use   1.6
## 64     14 2792  hallucinogen.frequency     3
## 65     14 2792            inhalant.use   2.6
## 66     14 2792      inhalant.frequency     5
## 67     14 2792       pain releiver.use   3.9
## 68     14 2792 pain releiver.frequency    12
## 69     14 2792           oxycontin.use   0.4
## 70     14 2792     oxycontin.frequency   4.5
## 71     14 2792        tranquilizer.use   0.9
## 72     14 2792  tranquilizer.frequency     5
## 73     14 2792           stimulant.use   0.8
## 74     14 2792     stimulant.frequency    12
## 75     14 2792                meth.use   0.1
## 76     14 2792          meth.frequency    24
## 77     14 2792            sedative.use   0.2
## 78     14 2792      sedative.frequency  16.5
## 79     15 2956             alcohol.use  29.2
## 80     15 2956       alcohol.frequency     6
## 81     15 2956           marijuana.use  14.5
## 82     15 2956     marijuana.frequency    25
## 83     15 2956             cocaine.use   0.5
## 84     15 2956       cocaine.frequency     4
## 85     15 2956               crack.use   0.1
## 86     15 2956         crack.frequency   9.5
## 87     15 2956              heroin.use   0.2
## 88     15 2956        heroin.frequency     1
## 89     15 2956        hallucinogen.use   2.1
## 90     15 2956  hallucinogen.frequency     4
## 91     15 2956            inhalant.use   2.5
## 92     15 2956      inhalant.frequency   5.5
## 93     15 2956       pain releiver.use   5.5
## 94     15 2956 pain releiver.frequency    10
## 95     15 2956           oxycontin.use   0.8
## 96     15 2956     oxycontin.frequency     3
## 97     15 2956        tranquilizer.use     2
## 98     15 2956  tranquilizer.frequency   4.5
## 99     15 2956           stimulant.use   1.5
## 100    15 2956     stimulant.frequency     6
## 101    15 2956                meth.use   0.3
## 102    15 2956          meth.frequency  10.5
## 103    15 2956            sedative.use   0.4
## 104    15 2956      sedative.frequency    30
## 105    16 3058             alcohol.use  40.1
## 106    16 3058       alcohol.frequency    10
## 107    16 3058           marijuana.use  22.5
## 108    16 3058     marijuana.frequency    30
## 109    16 3058             cocaine.use     1
## 110    16 3058       cocaine.frequency     7
## 111    16 3058               crack.use     0
## 112    16 3058         crack.frequency     1
## 113    16 3058              heroin.use   0.1
## 114    16 3058        heroin.frequency  66.5
## 115    16 3058        hallucinogen.use   3.4
## 116    16 3058  hallucinogen.frequency     3
## 117    16 3058            inhalant.use     3
## 118    16 3058      inhalant.frequency     3
## 119    16 3058       pain releiver.use   6.2
## 120    16 3058 pain releiver.frequency     7
## 121    16 3058           oxycontin.use   1.1
## 122    16 3058     oxycontin.frequency     4
## 123    16 3058        tranquilizer.use   2.4
## 124    16 3058  tranquilizer.frequency    11
## 125    16 3058           stimulant.use   1.8
## 126    16 3058     stimulant.frequency   9.5
## 127    16 3058                meth.use   0.3
## 128    16 3058          meth.frequency    36
## 129    16 3058            sedative.use   0.2
## 130    16 3058      sedative.frequency     3
## 131    17 3038             alcohol.use  49.3
## 132    17 3038       alcohol.frequency    13
## 133    17 3038           marijuana.use    28
## 134    17 3038     marijuana.frequency    36
## 135    17 3038             cocaine.use     2
## 136    17 3038       cocaine.frequency     5
## 137    17 3038               crack.use   0.1
## 138    17 3038         crack.frequency    21
## 139    17 3038              heroin.use   0.1
## 140    17 3038        heroin.frequency    64
## 141    17 3038        hallucinogen.use   4.8
## 142    17 3038  hallucinogen.frequency     3
## 143    17 3038            inhalant.use     2
## 144    17 3038      inhalant.frequency     4
## 145    17 3038       pain releiver.use   8.5
## 146    17 3038 pain releiver.frequency     9
## 147    17 3038           oxycontin.use   1.4
## 148    17 3038     oxycontin.frequency     6
## 149    17 3038        tranquilizer.use   3.5
## 150    17 3038  tranquilizer.frequency     7
## 151    17 3038           stimulant.use   2.8
## 152    17 3038     stimulant.frequency     9
## 153    17 3038                meth.use   0.6
## 154    17 3038          meth.frequency    48
## 155    17 3038            sedative.use   0.5
## 156    17 3038      sedative.frequency   6.5
## 157    18 2469             alcohol.use  58.7
## 158    18 2469       alcohol.frequency    24
## 159    18 2469           marijuana.use  33.7
## 160    18 2469     marijuana.frequency    52
## 161    18 2469             cocaine.use   3.2
## 162    18 2469       cocaine.frequency     5
## 163    18 2469               crack.use   0.4
## 164    18 2469         crack.frequency    10
## 165    18 2469              heroin.use   0.4
## 166    18 2469        heroin.frequency    46
## 167    18 2469        hallucinogen.use     7
## 168    18 2469  hallucinogen.frequency     4
## 169    18 2469            inhalant.use   1.8
## 170    18 2469      inhalant.frequency     4
## 171    18 2469       pain releiver.use   9.2
## 172    18 2469 pain releiver.frequency    12
## 173    18 2469           oxycontin.use   1.7
## 174    18 2469     oxycontin.frequency     7
## 175    18 2469        tranquilizer.use   4.9
## 176    18 2469  tranquilizer.frequency    12
## 177    18 2469           stimulant.use     3
## 178    18 2469     stimulant.frequency     8
## 179    18 2469                meth.use   0.5
## 180    18 2469          meth.frequency    12
## 181    18 2469            sedative.use   0.4
## 182    18 2469      sedative.frequency    10
## 183    19 2223             alcohol.use  64.6
## 184    19 2223       alcohol.frequency    36
## 185    19 2223           marijuana.use  33.4
## 186    19 2223     marijuana.frequency    60
## 187    19 2223             cocaine.use   4.1
## 188    19 2223       cocaine.frequency   5.5
## 189    19 2223               crack.use   0.5
## 190    19 2223         crack.frequency     2
## 191    19 2223              heroin.use   0.5
## 192    19 2223        heroin.frequency   180
## 193    19 2223        hallucinogen.use   8.6
## 194    19 2223  hallucinogen.frequency     3
## 195    19 2223            inhalant.use   1.4
## 196    19 2223      inhalant.frequency     3
## 197    19 2223       pain releiver.use   9.4
## 198    19 2223 pain releiver.frequency    12
## 199    19 2223           oxycontin.use   1.5
## 200    19 2223     oxycontin.frequency   7.5
## 201    19 2223        tranquilizer.use   4.2
## 202    19 2223  tranquilizer.frequency   4.5
## 203    19 2223           stimulant.use   3.3
## 204    19 2223     stimulant.frequency     6
## 205    19 2223                meth.use   0.4
## 206    19 2223          meth.frequency   105
## 207    19 2223            sedative.use   0.3
## 208    19 2223      sedative.frequency     6
## 209    20 2271             alcohol.use  69.7
## 210    20 2271       alcohol.frequency    48
## 211    20 2271           marijuana.use    34
## 212    20 2271     marijuana.frequency    60
## 213    20 2271             cocaine.use   4.9
## 214    20 2271       cocaine.frequency     8
## 215    20 2271               crack.use   0.6
## 216    20 2271         crack.frequency     5
## 217    20 2271              heroin.use   0.9
## 218    20 2271        heroin.frequency    45
## 219    20 2271        hallucinogen.use   7.4
## 220    20 2271  hallucinogen.frequency     2
## 221    20 2271            inhalant.use   1.5
## 222    20 2271      inhalant.frequency     4
## 223    20 2271       pain releiver.use    10
## 224    20 2271 pain releiver.frequency    10
## 225    20 2271           oxycontin.use   1.7
## 226    20 2271     oxycontin.frequency    12
## 227    20 2271        tranquilizer.use   5.4
## 228    20 2271  tranquilizer.frequency    10
## 229    20 2271           stimulant.use     4
## 230    20 2271     stimulant.frequency    12
## 231    20 2271                meth.use   0.9
## 232    20 2271          meth.frequency    12
## 233    20 2271            sedative.use   0.5
## 234    20 2271      sedative.frequency     4
## 235    21 2354             alcohol.use  83.2
## 236    21 2354       alcohol.frequency    52
## 237    21 2354           marijuana.use    33
## 238    21 2354     marijuana.frequency    52
## 239    21 2354             cocaine.use   4.8
## 240    21 2354       cocaine.frequency     5
## 241    21 2354               crack.use   0.5
## 242    21 2354         crack.frequency    17
## 243    21 2354              heroin.use   0.6
## 244    21 2354        heroin.frequency    30
## 245    21 2354        hallucinogen.use   6.3
## 246    21 2354  hallucinogen.frequency     4
## 247    21 2354            inhalant.use   1.4
## 248    21 2354      inhalant.frequency     2
## 249    21 2354       pain releiver.use     9
## 250    21 2354 pain releiver.frequency    15
## 251    21 2354           oxycontin.use   1.3
## 252    21 2354     oxycontin.frequency  13.5
## 253    21 2354        tranquilizer.use   3.9
## 254    21 2354  tranquilizer.frequency     7
## 255    21 2354           stimulant.use   4.1
## 256    21 2354     stimulant.frequency    10
## 257    21 2354                meth.use   0.6
## 258    21 2354          meth.frequency     2
## 259    21 2354            sedative.use   0.3
## 260    21 2354      sedative.frequency     9
## 261 22-23 4707             alcohol.use  84.2
## 262 22-23 4707       alcohol.frequency    52
## 263 22-23 4707           marijuana.use  28.4
## 264 22-23 4707     marijuana.frequency    52
## 265 22-23 4707             cocaine.use   4.5
## 266 22-23 4707       cocaine.frequency     5
## 267 22-23 4707               crack.use   0.5
## 268 22-23 4707         crack.frequency     5
## 269 22-23 4707              heroin.use   1.1
## 270 22-23 4707        heroin.frequency  57.5
## 271 22-23 4707        hallucinogen.use   5.2
## 272 22-23 4707  hallucinogen.frequency     3
## 273 22-23 4707            inhalant.use     1
## 274 22-23 4707      inhalant.frequency     4
## 275 22-23 4707       pain releiver.use    10
## 276 22-23 4707 pain releiver.frequency    15
## 277 22-23 4707           oxycontin.use   1.7
## 278 22-23 4707     oxycontin.frequency  17.5
## 279 22-23 4707        tranquilizer.use   4.4
## 280 22-23 4707  tranquilizer.frequency    12
## 281 22-23 4707           stimulant.use   3.6
## 282 22-23 4707     stimulant.frequency    10
## 283 22-23 4707                meth.use   0.6
## 284 22-23 4707          meth.frequency    46
## 285 22-23 4707            sedative.use   0.2
## 286 22-23 4707      sedative.frequency    52
## 287 24-25 4591             alcohol.use  83.1
## 288 24-25 4591       alcohol.frequency    52
## 289 24-25 4591           marijuana.use  24.9
## 290 24-25 4591     marijuana.frequency    60
## 291 24-25 4591             cocaine.use     4
## 292 24-25 4591       cocaine.frequency     6
## 293 24-25 4591               crack.use   0.5
## 294 24-25 4591         crack.frequency     6
## 295 24-25 4591              heroin.use   0.7
## 296 24-25 4591        heroin.frequency    88
## 297 24-25 4591        hallucinogen.use   4.5
## 298 24-25 4591  hallucinogen.frequency     2
## 299 24-25 4591            inhalant.use   0.8
## 300 24-25 4591      inhalant.frequency     2
## 301 24-25 4591       pain releiver.use     9
## 302 24-25 4591 pain releiver.frequency    15
## 303 24-25 4591           oxycontin.use   1.3
## 304 24-25 4591     oxycontin.frequency    20
## 305 24-25 4591        tranquilizer.use   4.3
## 306 24-25 4591  tranquilizer.frequency    10
## 307 24-25 4591           stimulant.use   2.6
## 308 24-25 4591     stimulant.frequency    10
## 309 24-25 4591                meth.use   0.7
## 310 24-25 4591          meth.frequency    21
## 311 24-25 4591            sedative.use   0.2
## 312 24-25 4591      sedative.frequency  17.5
## 313 26-29 2628             alcohol.use  80.7
## 314 26-29 2628       alcohol.frequency    52
## 315 26-29 2628           marijuana.use  20.8
## 316 26-29 2628     marijuana.frequency    52
## 317 26-29 2628             cocaine.use   3.2
## 318 26-29 2628       cocaine.frequency     5
## 319 26-29 2628               crack.use   0.4
## 320 26-29 2628         crack.frequency     6
## 321 26-29 2628              heroin.use   0.6
## 322 26-29 2628        heroin.frequency    50
## 323 26-29 2628        hallucinogen.use   3.2
## 324 26-29 2628  hallucinogen.frequency     3
## 325 26-29 2628            inhalant.use   0.6
## 326 26-29 2628      inhalant.frequency     4
## 327 26-29 2628       pain releiver.use   8.3
## 328 26-29 2628 pain releiver.frequency    13
## 329 26-29 2628           oxycontin.use   1.2
## 330 26-29 2628     oxycontin.frequency  13.5
## 331 26-29 2628        tranquilizer.use   4.2
## 332 26-29 2628  tranquilizer.frequency    10
## 333 26-29 2628           stimulant.use   2.3
## 334 26-29 2628     stimulant.frequency     7
## 335 26-29 2628                meth.use   0.6
## 336 26-29 2628          meth.frequency    30
## 337 26-29 2628            sedative.use   0.4
## 338 26-29 2628      sedative.frequency     4
## 339 30-34 2864             alcohol.use  77.5
## 340 30-34 2864       alcohol.frequency    52
## 341 30-34 2864           marijuana.use  16.4
## 342 30-34 2864     marijuana.frequency    72
## 343 30-34 2864             cocaine.use   2.1
## 344 30-34 2864       cocaine.frequency     8
## 345 30-34 2864               crack.use   0.5
## 346 30-34 2864         crack.frequency    15
## 347 30-34 2864              heroin.use   0.4
## 348 30-34 2864        heroin.frequency    66
## 349 30-34 2864        hallucinogen.use   1.8
## 350 30-34 2864  hallucinogen.frequency     2
## 351 30-34 2864            inhalant.use   0.4
## 352 30-34 2864      inhalant.frequency   3.5
## 353 30-34 2864       pain releiver.use   5.9
## 354 30-34 2864 pain releiver.frequency    22
## 355 30-34 2864           oxycontin.use   0.9
## 356 30-34 2864     oxycontin.frequency    46
## 357 30-34 2864        tranquilizer.use   3.6
## 358 30-34 2864  tranquilizer.frequency     8
## 359 30-34 2864           stimulant.use   1.4
## 360 30-34 2864     stimulant.frequency    12
## 361 30-34 2864                meth.use   0.4
## 362 30-34 2864          meth.frequency    54
## 363 30-34 2864            sedative.use   0.4
## 364 30-34 2864      sedative.frequency    10
## 365 35-49 7391             alcohol.use    75
## 366 35-49 7391       alcohol.frequency    52
## 367 35-49 7391           marijuana.use  10.4
## 368 35-49 7391     marijuana.frequency    48
## 369 35-49 7391             cocaine.use   1.5
## 370 35-49 7391       cocaine.frequency    15
## 371 35-49 7391               crack.use   0.5
## 372 35-49 7391         crack.frequency    48
## 373 35-49 7391              heroin.use   0.1
## 374 35-49 7391        heroin.frequency   280
## 375 35-49 7391        hallucinogen.use   0.6
## 376 35-49 7391  hallucinogen.frequency     3
## 377 35-49 7391            inhalant.use   0.3
## 378 35-49 7391      inhalant.frequency    10
## 379 35-49 7391       pain releiver.use   4.2
## 380 35-49 7391 pain releiver.frequency    12
## 381 35-49 7391           oxycontin.use   0.3
## 382 35-49 7391     oxycontin.frequency    12
## 383 35-49 7391        tranquilizer.use   1.9
## 384 35-49 7391  tranquilizer.frequency     6
## 385 35-49 7391           stimulant.use   0.6
## 386 35-49 7391     stimulant.frequency    24
## 387 35-49 7391                meth.use   0.2
## 388 35-49 7391          meth.frequency   104
## 389 35-49 7391            sedative.use   0.3
## 390 35-49 7391      sedative.frequency    10
## 391 50-64 3923             alcohol.use  67.2
## 392 50-64 3923       alcohol.frequency    52
## 393 50-64 3923           marijuana.use   7.3
## 394 50-64 3923     marijuana.frequency    52
## 395 50-64 3923             cocaine.use   0.9
## 396 50-64 3923       cocaine.frequency    36
## 397 50-64 3923               crack.use   0.4
## 398 50-64 3923         crack.frequency    62
## 399 50-64 3923              heroin.use   0.1
## 400 50-64 3923        heroin.frequency    41
## 401 50-64 3923        hallucinogen.use   0.3
## 402 50-64 3923  hallucinogen.frequency    44
## 403 50-64 3923            inhalant.use   0.2
## 404 50-64 3923      inhalant.frequency  13.5
## 405 50-64 3923       pain releiver.use   2.5
## 406 50-64 3923 pain releiver.frequency    12
## 407 50-64 3923           oxycontin.use   0.4
## 408 50-64 3923     oxycontin.frequency     5
## 409 50-64 3923        tranquilizer.use   1.4
## 410 50-64 3923  tranquilizer.frequency    10
## 411 50-64 3923           stimulant.use   0.3
## 412 50-64 3923     stimulant.frequency    24
## 413 50-64 3923                meth.use   0.2
## 414 50-64 3923          meth.frequency    30
## 415 50-64 3923            sedative.use   0.2
## 416 50-64 3923      sedative.frequency   104
## 417   65+ 2448             alcohol.use  49.3
## 418   65+ 2448       alcohol.frequency    52
## 419   65+ 2448           marijuana.use   1.2
## 420   65+ 2448     marijuana.frequency    36
## 421   65+ 2448             cocaine.use     0
## 422   65+ 2448       cocaine.frequency     -
## 423   65+ 2448               crack.use     0
## 424   65+ 2448         crack.frequency     -
## 425   65+ 2448              heroin.use     0
## 426   65+ 2448        heroin.frequency   120
## 427   65+ 2448        hallucinogen.use   0.1
## 428   65+ 2448  hallucinogen.frequency     2
## 429   65+ 2448            inhalant.use     0
## 430   65+ 2448      inhalant.frequency     -
## 431   65+ 2448       pain releiver.use   0.6
## 432   65+ 2448 pain releiver.frequency    24
## 433   65+ 2448           oxycontin.use     0
## 434   65+ 2448     oxycontin.frequency     -
## 435   65+ 2448        tranquilizer.use   0.2
## 436   65+ 2448  tranquilizer.frequency     5
## 437   65+ 2448           stimulant.use     0
## 438   65+ 2448     stimulant.frequency   364
## 439   65+ 2448                meth.use     0
## 440   65+ 2448          meth.frequency     -
## 441   65+ 2448            sedative.use     0
## 442   65+ 2448      sedative.frequency    15

Now seperate each drugfor Use and frequency using seperate():

drug_usage2 <- drug_usage1 %>% 
  separate(Group, into = c("Substance", "class"), sep = "\\." )
head(drug_usage2,10)
##    age    n Substance     class value
## 1   12 2798   alcohol       use   3.9
## 2   12 2798   alcohol frequency     3
## 3   12 2798 marijuana       use   1.1
## 4   12 2798 marijuana frequency     4
## 5   12 2798   cocaine       use   0.1
## 6   12 2798   cocaine frequency     5
## 7   12 2798     crack       use     0
## 8   12 2798     crack frequency     -
## 9   12 2798    heroin       use   0.1
## 10  12 2798    heroin frequency  35.5

Spreading the table using spread();

drug_usage3 <- drug_usage2 %>% 
  spread(class, value)
drug_usage3
##       age    n     Substance frequency  use
## 1      12 2798       alcohol         3  3.9
## 2      12 2798       cocaine         5  0.1
## 3      12 2798         crack         -    0
## 4      12 2798  hallucinogen        52  0.2
## 5      12 2798        heroin      35.5  0.1
## 6      12 2798      inhalant        19  1.6
## 7      12 2798     marijuana         4  1.1
## 8      12 2798          meth         -    0
## 9      12 2798     oxycontin      24.5  0.1
## 10     12 2798 pain releiver        36    2
## 11     12 2798      sedative        13  0.2
## 12     12 2798     stimulant         2  0.2
## 13     12 2798  tranquilizer        52  0.2
## 14     13 2757       alcohol         6  8.5
## 15     13 2757       cocaine         1  0.1
## 16     13 2757         crack         3    0
## 17     13 2757  hallucinogen         6  0.6
## 18     13 2757        heroin         -    0
## 19     13 2757      inhalant        12  2.5
## 20     13 2757     marijuana        15  3.4
## 21     13 2757          meth         5  0.1
## 22     13 2757     oxycontin        41  0.1
## 23     13 2757 pain releiver        14  2.4
## 24     13 2757      sedative        19  0.1
## 25     13 2757     stimulant         4  0.3
## 26     13 2757  tranquilizer      25.5  0.3
## 27     14 2792       alcohol         5 18.1
## 28     14 2792       cocaine       5.5  0.1
## 29     14 2792         crack         -    0
## 30     14 2792  hallucinogen         3  1.6
## 31     14 2792        heroin         2  0.1
## 32     14 2792      inhalant         5  2.6
## 33     14 2792     marijuana        24  8.7
## 34     14 2792          meth        24  0.1
## 35     14 2792     oxycontin       4.5  0.4
## 36     14 2792 pain releiver        12  3.9
## 37     14 2792      sedative      16.5  0.2
## 38     14 2792     stimulant        12  0.8
## 39     14 2792  tranquilizer         5  0.9
## 40     15 2956       alcohol         6 29.2
## 41     15 2956       cocaine         4  0.5
## 42     15 2956         crack       9.5  0.1
## 43     15 2956  hallucinogen         4  2.1
## 44     15 2956        heroin         1  0.2
## 45     15 2956      inhalant       5.5  2.5
## 46     15 2956     marijuana        25 14.5
## 47     15 2956          meth      10.5  0.3
## 48     15 2956     oxycontin         3  0.8
## 49     15 2956 pain releiver        10  5.5
## 50     15 2956      sedative        30  0.4
## 51     15 2956     stimulant         6  1.5
## 52     15 2956  tranquilizer       4.5    2
## 53     16 3058       alcohol        10 40.1
## 54     16 3058       cocaine         7    1
## 55     16 3058         crack         1    0
## 56     16 3058  hallucinogen         3  3.4
## 57     16 3058        heroin      66.5  0.1
## 58     16 3058      inhalant         3    3
## 59     16 3058     marijuana        30 22.5
## 60     16 3058          meth        36  0.3
## 61     16 3058     oxycontin         4  1.1
## 62     16 3058 pain releiver         7  6.2
## 63     16 3058      sedative         3  0.2
## 64     16 3058     stimulant       9.5  1.8
## 65     16 3058  tranquilizer        11  2.4
## 66     17 3038       alcohol        13 49.3
## 67     17 3038       cocaine         5    2
## 68     17 3038         crack        21  0.1
## 69     17 3038  hallucinogen         3  4.8
## 70     17 3038        heroin        64  0.1
## 71     17 3038      inhalant         4    2
## 72     17 3038     marijuana        36   28
## 73     17 3038          meth        48  0.6
## 74     17 3038     oxycontin         6  1.4
## 75     17 3038 pain releiver         9  8.5
## 76     17 3038      sedative       6.5  0.5
## 77     17 3038     stimulant         9  2.8
## 78     17 3038  tranquilizer         7  3.5
## 79     18 2469       alcohol        24 58.7
## 80     18 2469       cocaine         5  3.2
## 81     18 2469         crack        10  0.4
## 82     18 2469  hallucinogen         4    7
## 83     18 2469        heroin        46  0.4
## 84     18 2469      inhalant         4  1.8
## 85     18 2469     marijuana        52 33.7
## 86     18 2469          meth        12  0.5
## 87     18 2469     oxycontin         7  1.7
## 88     18 2469 pain releiver        12  9.2
## 89     18 2469      sedative        10  0.4
## 90     18 2469     stimulant         8    3
## 91     18 2469  tranquilizer        12  4.9
## 92     19 2223       alcohol        36 64.6
## 93     19 2223       cocaine       5.5  4.1
## 94     19 2223         crack         2  0.5
## 95     19 2223  hallucinogen         3  8.6
## 96     19 2223        heroin       180  0.5
## 97     19 2223      inhalant         3  1.4
## 98     19 2223     marijuana        60 33.4
## 99     19 2223          meth       105  0.4
## 100    19 2223     oxycontin       7.5  1.5
## 101    19 2223 pain releiver        12  9.4
## 102    19 2223      sedative         6  0.3
## 103    19 2223     stimulant         6  3.3
## 104    19 2223  tranquilizer       4.5  4.2
## 105    20 2271       alcohol        48 69.7
## 106    20 2271       cocaine         8  4.9
## 107    20 2271         crack         5  0.6
## 108    20 2271  hallucinogen         2  7.4
## 109    20 2271        heroin        45  0.9
## 110    20 2271      inhalant         4  1.5
## 111    20 2271     marijuana        60   34
## 112    20 2271          meth        12  0.9
## 113    20 2271     oxycontin        12  1.7
## 114    20 2271 pain releiver        10   10
## 115    20 2271      sedative         4  0.5
## 116    20 2271     stimulant        12    4
## 117    20 2271  tranquilizer        10  5.4
## 118    21 2354       alcohol        52 83.2
## 119    21 2354       cocaine         5  4.8
## 120    21 2354         crack        17  0.5
## 121    21 2354  hallucinogen         4  6.3
## 122    21 2354        heroin        30  0.6
## 123    21 2354      inhalant         2  1.4
## 124    21 2354     marijuana        52   33
## 125    21 2354          meth         2  0.6
## 126    21 2354     oxycontin      13.5  1.3
## 127    21 2354 pain releiver        15    9
## 128    21 2354      sedative         9  0.3
## 129    21 2354     stimulant        10  4.1
## 130    21 2354  tranquilizer         7  3.9
## 131 22-23 4707       alcohol        52 84.2
## 132 22-23 4707       cocaine         5  4.5
## 133 22-23 4707         crack         5  0.5
## 134 22-23 4707  hallucinogen         3  5.2
## 135 22-23 4707        heroin      57.5  1.1
## 136 22-23 4707      inhalant         4    1
## 137 22-23 4707     marijuana        52 28.4
## 138 22-23 4707          meth        46  0.6
## 139 22-23 4707     oxycontin      17.5  1.7
## 140 22-23 4707 pain releiver        15   10
## 141 22-23 4707      sedative        52  0.2
## 142 22-23 4707     stimulant        10  3.6
## 143 22-23 4707  tranquilizer        12  4.4
## 144 24-25 4591       alcohol        52 83.1
## 145 24-25 4591       cocaine         6    4
## 146 24-25 4591         crack         6  0.5
## 147 24-25 4591  hallucinogen         2  4.5
## 148 24-25 4591        heroin        88  0.7
## 149 24-25 4591      inhalant         2  0.8
## 150 24-25 4591     marijuana        60 24.9
## 151 24-25 4591          meth        21  0.7
## 152 24-25 4591     oxycontin        20  1.3
## 153 24-25 4591 pain releiver        15    9
## 154 24-25 4591      sedative      17.5  0.2
## 155 24-25 4591     stimulant        10  2.6
## 156 24-25 4591  tranquilizer        10  4.3
## 157 26-29 2628       alcohol        52 80.7
## 158 26-29 2628       cocaine         5  3.2
## 159 26-29 2628         crack         6  0.4
## 160 26-29 2628  hallucinogen         3  3.2
## 161 26-29 2628        heroin        50  0.6
## 162 26-29 2628      inhalant         4  0.6
## 163 26-29 2628     marijuana        52 20.8
## 164 26-29 2628          meth        30  0.6
## 165 26-29 2628     oxycontin      13.5  1.2
## 166 26-29 2628 pain releiver        13  8.3
## 167 26-29 2628      sedative         4  0.4
## 168 26-29 2628     stimulant         7  2.3
## 169 26-29 2628  tranquilizer        10  4.2
## 170 30-34 2864       alcohol        52 77.5
## 171 30-34 2864       cocaine         8  2.1
## 172 30-34 2864         crack        15  0.5
## 173 30-34 2864  hallucinogen         2  1.8
## 174 30-34 2864        heroin        66  0.4
## 175 30-34 2864      inhalant       3.5  0.4
## 176 30-34 2864     marijuana        72 16.4
## 177 30-34 2864          meth        54  0.4
## 178 30-34 2864     oxycontin        46  0.9
## 179 30-34 2864 pain releiver        22  5.9
## 180 30-34 2864      sedative        10  0.4
## 181 30-34 2864     stimulant        12  1.4
## 182 30-34 2864  tranquilizer         8  3.6
## 183 35-49 7391       alcohol        52   75
## 184 35-49 7391       cocaine        15  1.5
## 185 35-49 7391         crack        48  0.5
## 186 35-49 7391  hallucinogen         3  0.6
## 187 35-49 7391        heroin       280  0.1
## 188 35-49 7391      inhalant        10  0.3
## 189 35-49 7391     marijuana        48 10.4
## 190 35-49 7391          meth       104  0.2
## 191 35-49 7391     oxycontin        12  0.3
## 192 35-49 7391 pain releiver        12  4.2
## 193 35-49 7391      sedative        10  0.3
## 194 35-49 7391     stimulant        24  0.6
## 195 35-49 7391  tranquilizer         6  1.9
## 196 50-64 3923       alcohol        52 67.2
## 197 50-64 3923       cocaine        36  0.9
## 198 50-64 3923         crack        62  0.4
## 199 50-64 3923  hallucinogen        44  0.3
## 200 50-64 3923        heroin        41  0.1
## 201 50-64 3923      inhalant      13.5  0.2
## 202 50-64 3923     marijuana        52  7.3
## 203 50-64 3923          meth        30  0.2
## 204 50-64 3923     oxycontin         5  0.4
## 205 50-64 3923 pain releiver        12  2.5
## 206 50-64 3923      sedative       104  0.2
## 207 50-64 3923     stimulant        24  0.3
## 208 50-64 3923  tranquilizer        10  1.4
## 209   65+ 2448       alcohol        52 49.3
## 210   65+ 2448       cocaine         -    0
## 211   65+ 2448         crack         -    0
## 212   65+ 2448  hallucinogen         2  0.1
## 213   65+ 2448        heroin       120    0
## 214   65+ 2448      inhalant         -    0
## 215   65+ 2448     marijuana        36  1.2
## 216   65+ 2448          meth         -    0
## 217   65+ 2448     oxycontin         -    0
## 218   65+ 2448 pain releiver        24  0.6
## 219   65+ 2448      sedative        15    0
## 220   65+ 2448     stimulant       364    0
## 221   65+ 2448  tranquilizer         5  0.2

Using mutate make the values as numeric:

drug_usage3 <- suppressWarnings(drug_usage3 %>% 
  mutate(use = as.numeric(use),
         frequency = as.numeric(frequency)))
head(drug_usage3)
##   age    n    Substance frequency use
## 1  12 2798      alcohol       3.0 3.9
## 2  12 2798      cocaine       5.0 0.1
## 3  12 2798        crack        NA 0.0
## 4  12 2798 hallucinogen      52.0 0.2
## 5  12 2798       heroin      35.5 0.1
## 6  12 2798     inhalant      19.0 1.6

To just use Alcohol for analysis:

alcohol <- drug_usage3 %>% 
  filter(Substance=="alcohol") %>% 
  select(-Substance)
alcohol
##      age    n frequency  use
## 1     12 2798         3  3.9
## 2     13 2757         6  8.5
## 3     14 2792         5 18.1
## 4     15 2956         6 29.2
## 5     16 3058        10 40.1
## 6     17 3038        13 49.3
## 7     18 2469        24 58.7
## 8     19 2223        36 64.6
## 9     20 2271        48 69.7
## 10    21 2354        52 83.2
## 11 22-23 4707        52 84.2
## 12 24-25 4591        52 83.1
## 13 26-29 2628        52 80.7
## 14 30-34 2864        52 77.5
## 15 35-49 7391        52 75.0
## 16 50-64 3923        52 67.2
## 17   65+ 2448        52 49.3

Ploting age and alcohol usage:

Age With Use:

ggplot(alcohol) + geom_point(aes(age, y = use), color = "red") + labs(x = "Age", y = "Usage")

Age With frequency:

ggplot(alcohol) + geom_point(aes(age, y = frequency), color = "blue") + labs(x = "Age", y = "Frequency")