The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 5 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start   end
1  0.618 0.618 0.913   0.1   3.4
2  0.114 0.114 0.292   2.4   4.7
3  0.090 0.090 0.345   3.4   5.9
4  0.384 0.384 0.735   4.7   7.2
5  0.384 0.384 0.754   5.9   8.6
6  0.030 0.030 0.134   7.2   9.9
7  0.700 0.700 0.002   8.6  11.2
8  0.060 0.060 0.003   9.9  13.5
9  0.031 0.031 0.209  11.2  15.2
10 0.569 0.569 0.351  13.5  17.4
11 0.576 0.576 0.211  15.2  20.0
12 0.434 0.434 0.085  17.4  23.1
13 0.115 0.115 0.061  20.0  25.9
14 0.192 0.192 0.073  23.1  29.1
15 0.974 0.974 0.049  25.9  31.3
16 0.092 0.092 0.258  29.1  32.8
17 0.039 0.039 0.150  31.3  34.8
18 0.241 0.241 0.805  32.8  36.6
19 0.280 0.280 0.643  34.8  38.9
20 0.092 0.092 0.285  36.6  40.9
21 0.111 0.111 0.223  38.9  43.8
22 0.080 0.080 0.449  40.9  51.7
23 0.324 0.324 0.770  43.8  53.4
24 0.043 0.043 0.098  51.7  55.2
25 0.060 0.060 0.098  53.4  57.0
26 0.063 0.063 0.085  55.2  58.5
27 0.030 0.030 0.054  57.0  61.0
28 0.177 0.177 0.056  58.5  63.0
29 0.077 0.077 0.723  61.0  65.6
30 0.194 0.194 0.845  63.0  67.2
31 0.383 0.383 0.593  65.6  71.2
32 0.359 0.359 0.546  67.2  73.3
33 0.004 0.004 0.106  71.2  75.2
34 0.001 0.001 0.137  73.3  76.7
35 0.028 0.028 0.070  75.2  78.6
36 0.098 0.098 0.767  76.7  80.7
37 0.193 0.193 0.446  78.6  82.9
38 0.570 0.570 0.844  80.7  85.6
39 0.469 0.469 0.893  82.9  89.2
40 0.203 0.203 0.339  85.6  92.3
41 0.182 0.182 0.403  89.2  95.3
42 0.144 0.144 0.304  92.3  97.7
43 0.469 0.469 0.247  95.3 100.5
44 0.361 0.361 0.016  97.7 103.2
45 0.202 0.202 0.023 100.6 106.4
46 0.303 0.303 0.482 103.2 108.1
47 0.152 0.152 0.680 106.4 110.7
48 0.310 0.310 0.550 108.1 112.5
49 0.987 0.987 0.009 110.7 114.0
50 0.995 0.995 0.015 112.5 115.7
51 0.960 0.960 0.460 114.0 117.2
52 0.683 0.683 0.689 115.7 119.4
53 0.362 0.362 0.566 117.2 121.5
54 0.122 0.122 0.573 119.4 123.5
55 0.064 0.064 0.593 121.5 125.1
56 0.045 0.045 0.397 123.5 127.2
57 0.012 0.012 0.104 125.1 129.5
58 0.141 0.141 0.035 127.2 132.7
59 0.033 0.033 0.126 129.5 134.6
60 0.004 0.004 0.188 132.7 136.3
61 0.021 0.021 0.284 134.6 139.3
62 0.082 0.082 0.256 136.4 141.8
63 0.414 0.414 0.235 139.3 143.5
64 0.354 0.354 0.656 141.8 145.8
65 0.354 0.354 0.522 143.5 147.8
66 0.666 0.666 0.537 145.8 149.5
67 0.111 0.111 0.553 147.8 151.3
68 0.135 0.135 0.382 149.5 153.0
69 0.302 0.302 0.535 151.3 154.8
70 0.207 0.207 0.125 153.0 156.7
71 0.721 0.721 0.158 154.8 158.2
72 0.500 0.500 0.162 156.7 160.1
73 0.021 0.021 0.228 158.2 162.2
74 0.089 0.089 0.230 160.1 164.4
75 0.510 0.510 0.003 162.2 166.3
76 0.203 0.203 0.004 164.4 168.0
77 0.384 0.384 0.426 166.3 169.3
78 0.835 0.835 0.908 168.0 170.9
79 0.563 0.563 0.613 169.3 172.5
80 0.078 0.078 0.354 170.9 173.8
81 0.195 0.195 0.333 172.5 175.2
82 0.651 0.651 0.622 173.8 178.4
83 0.406 0.406 0.233 175.1 180.6

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue start   end
1     sum     6  0.030   7.2   9.9
2     sum     9  0.031  11.2  15.2
3     sum    17  0.039  31.3  34.8
4     sum    24  0.043  51.7  55.2
5     sum    27  0.030  57.0  61.0
6     sum    33  0.004  71.2  75.2
7     sum    34  0.001  73.3  76.7
8     sum    35  0.028  75.2  78.6
9     sum    56  0.045 123.5 127.2
10    sum    57  0.012 125.1 129.5
11    sum    59  0.033 129.5 134.6
12    sum    60  0.004 132.7 136.3
13    sum    61  0.021 134.6 139.3
14    sum    73  0.021 158.2 162.2
15   mean     6  0.030   7.2   9.9
16   mean     9  0.031  11.2  15.2
17   mean    17  0.039  31.3  34.8
18   mean    24  0.043  51.7  55.2
19   mean    27  0.030  57.0  61.0
20   mean    33  0.004  71.2  75.2
21   mean    34  0.001  73.3  76.7
22   mean    35  0.028  75.2  78.6
23   mean    56  0.045 123.5 127.2
24   mean    57  0.012 125.1 129.5
25   mean    59  0.033 129.5 134.6
26   mean    60  0.004 132.7 136.3
27   mean    61  0.021 134.6 139.3
28   mean    73  0.021 158.2 162.2
29    max     7  0.002   8.6  11.2
30    max     8  0.003   9.9  13.5
31    max    15  0.049  25.9  31.3
32    max    44  0.016  97.7 103.2
33    max    45  0.023 100.6 106.4
34    max    49  0.009 110.7 114.0
35    max    50  0.015 112.5 115.7
36    max    58  0.035 127.2 132.7
37    max    75  0.003 162.2 166.3
38    max    76  0.004 164.4 168.0