The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 6 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start   end
1  0.241 0.242 0.601   0.1   2.8
2  0.323 0.323 0.482   1.4   4.3
3  0.663 0.663 0.274   2.8   5.5
4  0.492 0.492 0.251   4.3   6.6
5  0.178 0.178 0.401   5.5   8.0
6  0.057 0.057 0.500   6.6  10.0
7  0.009 0.009 0.469   8.0  11.6
8  0.260 0.260 0.325  10.0  13.0
9  0.579 0.579 0.932  11.6  14.7
10 0.646 0.646 0.417  13.0  16.4
11 0.076 0.076 0.109  14.7  18.2
12 0.012 0.012 0.155  16.4  19.9
13 0.033 0.033 0.197  18.2  21.5
14 0.011 0.011 0.015  19.9  23.2
15 0.050 0.050 0.066  21.5  24.7
16 0.101 0.102 0.225  23.2  26.4
17 0.014 0.014 0.141  24.7  29.5
18 0.002 0.002 0.142  26.4  30.8
19 0.014 0.014 0.041  29.5  32.3
20 0.005 0.005 0.123  30.8  33.7
21 0.062 0.062 0.298  32.3  36.3
22 0.740 0.740 0.595  33.7  38.2
23 0.829 0.829 0.305  36.3  39.8
24 0.634 0.634 0.608  38.2  41.1
25 0.889 0.889 0.442  39.8  43.6
26 0.831 0.831 0.375  41.1  45.9
27 0.483 0.483 0.198  43.6  47.5
28 0.346 0.346 0.202  45.9  50.1
29 0.235 0.235 0.809  47.6  52.3
30 0.201 0.201 0.693  50.1  54.0
31 0.142 0.142 0.383  52.3  55.9
32 0.538 0.538 0.768  54.0  62.7
33 0.634 0.634 0.218  55.9  66.0
34 0.033 0.033 0.295  62.7  67.9
35 0.015 0.015 0.143  66.0  70.4
36 0.273 0.273 0.899  68.0  72.4
37 0.655 0.655 0.040  70.4  74.6
38 0.064 0.064 0.036  72.4  77.3
39 0.110 0.110 0.273  74.6  79.6
40 0.690 0.690 0.715  77.3  81.7
41 0.612 0.612 0.840  79.6  83.9
42 0.854 0.855 0.715  81.7  86.0
43 0.711 0.712 0.926  83.9  88.7
44 0.118 0.118 0.513  86.0  90.7
45 0.086 0.086 0.591  88.7  92.6
46 0.032 0.033 0.201  90.7  94.9
47 0.014 0.014 0.245  92.6  97.5
48 0.088 0.088 0.109  94.9 100.0
49 0.037 0.037 0.120  97.5 102.5
50 0.030 0.030 0.562 100.0 105.0
51 0.196 0.196 0.665 102.5 107.0
52 0.261 0.261 0.579 105.0 109.1
53 0.015 0.015 0.023 107.0 111.4
54 0.005 0.005 0.008 109.2 113.7
55 0.121 0.121 0.709 111.4 116.2
56 0.290 0.290 0.899 113.7 118.6
57 0.341 0.341 0.807 116.2 120.9
58 0.047 0.047 0.592 118.6 123.3
59 0.006 0.006 0.190 120.9 125.3
60 0.019 0.019 0.228 123.4 128.1
61 0.110 0.110 0.271 125.3 130.4
62 0.185 0.185 0.143 128.1 132.3
63 0.193 0.193 0.459 130.4 134.2
64 0.370 0.370 0.344 132.3 136.3
65 0.706 0.706 0.807 134.2 138.5
66 0.947 0.948 0.911 136.3 140.5
67 0.157 0.157 0.162 138.5 143.6
68 0.059 0.059 0.140 140.5 145.6
69 0.520 0.521 0.646 143.6 148.1
70 0.278 0.278 0.450 145.6 149.5
71 0.114 0.114 0.473 148.1 151.3
72 0.309 0.309 0.739 149.5 152.9
73 0.671 0.672 0.651 151.3 154.6
74 0.769 0.770 0.899 152.9 156.4
75 0.718 0.718 0.951 154.6 158.2
76 0.453 0.453 0.190 156.4 159.9
77 0.287 0.287 0.264 158.2 161.6
78 0.476 0.476 0.460 159.9 163.0
79 0.300 0.300 0.105 161.6 164.4
80 0.265 0.265 0.219 163.0 166.0
81 0.903 0.903 0.040 164.4 167.2
82 0.183 0.183 0.252 166.0 168.9
83 0.031 0.031 0.184 167.2 170.6
84 0.121 0.121 0.344 167.4 170.7

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue start   end
1     sum     7  0.009   8.0  11.6
2     sum    12  0.012  16.4  19.9
3     sum    13  0.033  18.2  21.5
4     sum    14  0.011  19.9  23.2
5     sum    17  0.014  24.7  29.5
6     sum    18  0.002  26.4  30.8
7     sum    19  0.014  29.5  32.3
8     sum    20  0.005  30.8  33.7
9     sum    34  0.033  62.7  67.9
10    sum    35  0.015  66.0  70.4
11    sum    46  0.032  90.7  94.9
12    sum    47  0.014  92.6  97.5
13    sum    49  0.037  97.5 102.5
14    sum    50  0.030 100.0 105.0
15    sum    53  0.015 107.0 111.4
16    sum    54  0.005 109.2 113.7
17    sum    58  0.047 118.6 123.3
18    sum    59  0.006 120.9 125.3
19    sum    60  0.019 123.4 128.1
20    sum    83  0.031 167.2 170.6
21   mean     7  0.009   8.0  11.6
22   mean    12  0.012  16.4  19.9
23   mean    13  0.033  18.2  21.5
24   mean    14  0.011  19.9  23.2
25   mean    17  0.014  24.7  29.5
26   mean    18  0.002  26.4  30.8
27   mean    19  0.014  29.5  32.3
28   mean    20  0.005  30.8  33.7
29   mean    34  0.033  62.7  67.9
30   mean    35  0.015  66.0  70.4
31   mean    46  0.033  90.7  94.9
32   mean    47  0.014  92.6  97.5
33   mean    49  0.037  97.5 102.5
34   mean    50  0.030 100.0 105.0
35   mean    53  0.015 107.0 111.4
36   mean    54  0.005 109.2 113.7
37   mean    58  0.047 118.6 123.3
38   mean    59  0.006 120.9 125.3
39   mean    60  0.019 123.4 128.1
40   mean    83  0.031 167.2 170.6
41    max    14  0.015  19.9  23.2
42    max    19  0.041  29.5  32.3
43    max    37  0.040  70.4  74.6
44    max    38  0.036  72.4  77.3
45    max    53  0.023 107.0 111.4
46    max    54  0.008 109.2 113.7
47    max    81  0.040 164.4 167.2